Gene Rmet_3518 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRmet_3518 
Symbol 
ID4040366 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameCupriavidus metallidurans CH34 
KingdomBacteria 
Replicon accessionNC_007973 
Strand
Start bp3809177 
End bp3810385 
Gene Length1209 bp 
Protein Length402 aa 
Translation table11 
GC content62% 
IMG OID637978935 
Productextracellular ligand-binding receptor 
Protein accessionYP_585659 
Protein GI94312449 
COG category[E] Amino acid transport and metabolism 
COG ID[COG0683] ABC-type branched-chain amino acid transport systems, periplasmic component 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones31 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones13 
Fosmid unclonability p-value0.36456 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAGATGA CTCGACTGGC CGTCGCAGTG GCGGCGACTG TCCTTGGTGC GTTTGCAGGC 
GGCGCTTCGG CGCAGGTTTC GGGTGACACG GTAAAGATCG GCTACATCAC CGACATGTCG
GGCCTGTACG CCGACATCGA CGGCCCGGGC GGCCTGGAAG CGGTGAAGAT GGCCATCGAG
GATCACGGTG GCAAGGTGCT GGGCAAGCCG ATCGAACTGG TTTCGGCCGA CCACCAGAAC
AAGGCCGACA TCGCCGCCTC GAAGGCGCGC GAGTGGATGG ACCAGCAGGG TCTGGACATG
CTGCTGGGCG GCACCAACTC GGCTACCGGC CTGGCCATGA ACAAGGTGGC GCAGGAGAAG
AAGCGCGTCT ACTTCAACGT GGGCGCGGGC ACTGCCCGAC TGACGAACGA AGAGTGCTCG
CCGTACACGG TGCACTACGC CTATGACACG GTGGCGCTTG CCAAGGGCAC CGGCAGCGCG
GTGGTCAAGC AGGGCGGCAA GAAGTGGTTC TTCCTGACTG CCGACTACGC ATTCGGTCAC
TCGCTCGAGA ACGACACGGC AGCCGTGGTG AAGGCCAACG GCGGCACGGT GGTGGGTTCG
GTGCGCCACC CGCTGTCGGC ATCGGACTTC TCGTCGTTCC TGCTGCAGGC GCAGTCGTCA
AAGGCTGACA TCCTGGGCCT GGCCAACGCC GGTGGCGACA CGATCAACGC GATCAAGGCG
GCCAAGGAAT TCGGCATCAC GAAGAACATG AAGATCGCCG GCCTGCTGAT GTTCATCAAC
GACATTCACT CGCTGGGTCT GAAGAACACC GAAGGCCTGC TGATGACCGA CAGCTGGTAC
TGGGACATGA ACGACGACAC GCGCAAGTTC GCGAACCGCT TCTTCGGCAA GATGAAGAAG
ATGCCGAGCA GCCTGCAGGC AGCCGACTAC TCCGCGATCA GCACGTACCT GAAGGCCGTG
GAAGCCGCCA AGACCGATGA TCCGGACAAG GTCATGGCCG AGCTGAAGAA GATGAAGATC
AGCGACTTCT ACAACAAGAG CTACATCCGT GCCGATGGCC GCAACATCCA CGACATGTAC
CTGATGCAGG TGAAGGCGCC GGCCGATTCG AAGAAGCCGT GGGACTACCT GAAGATCGTA
ACGACGATCC CGGGCGACCA GGCGTTCACG ACGCCGGCCG AGTCGAAGTG CGCGCTGTTG
AAGAAGTAA
 
Protein sequence
MKMTRLAVAV AATVLGAFAG GASAQVSGDT VKIGYITDMS GLYADIDGPG GLEAVKMAIE 
DHGGKVLGKP IELVSADHQN KADIAASKAR EWMDQQGLDM LLGGTNSATG LAMNKVAQEK
KRVYFNVGAG TARLTNEECS PYTVHYAYDT VALAKGTGSA VVKQGGKKWF FLTADYAFGH
SLENDTAAVV KANGGTVVGS VRHPLSASDF SSFLLQAQSS KADILGLANA GGDTINAIKA
AKEFGITKNM KIAGLLMFIN DIHSLGLKNT EGLLMTDSWY WDMNDDTRKF ANRFFGKMKK
MPSSLQAADY SAISTYLKAV EAAKTDDPDK VMAELKKMKI SDFYNKSYIR ADGRNIHDMY
LMQVKAPADS KKPWDYLKIV TTIPGDQAFT TPAESKCALL KK