More than 300 homologs were found in PanDaTox collection
for query gene Sked_33440 on replicon NC_013521
Organism: Sanguibacter keddieii DSM 10542



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_013521  Sked_33440  response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain  100 
 
 
938 aa  1824    Sanguibacter keddieii DSM 10542  Bacteria  normal  normal 
 
 
-
 
NC_013739  Cwoe_1706  transcriptional regulator, LuxR family  56.9 
 
 
913 aa  68.9  0.0000000004  Conexibacter woesei DSM 14684  Bacteria  normal  normal  0.08592 
 
 
-
 
NC_013204  Elen_1743  two component transcriptional regulator, LuxR family  51.92 
 
 
214 aa  63.2  0.00000002  Eggerthella lenta DSM 2243  Bacteria  normal  0.370009  normal  0.039988 
 
 
-
 
NC_008726  Mvan_5653  regulatory protein, LuxR  51.79 
 
 
921 aa  61.6  0.00000006  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  0.794643  normal  0.376605 
 
 
-
 
NC_013131  Caci_3154  transcriptional regulator, LuxR family  49.21 
 
 
1089 aa  61.2  0.00000009  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal  0.639432 
 
 
-
 
NC_013093  Amir_2245  transcriptional regulator, LuxR family  50 
 
 
956 aa  60.8  0.0000001  Actinosynnema mirum DSM 43827  Bacteria  unclonable  0.00000425814  n/a   
 
 
-
 
NC_013131  Caci_2089  transcriptional regulator, LuxR family  42 
 
 
959 aa  60.8  0.0000001  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal  0.840433 
 
 
-
 
NC_011886  Achl_3894  transcriptional regulator, LuxR family  51.85 
 
 
897 aa  59.3  0.0000003  Arthrobacter chlorophenolicus A6  Bacteria  n/a    normal 
 
 
-
 
NC_013235  Namu_0324  transcriptional regulator, LuxR family  56.86 
 
 
938 aa  58.5  0.0000005  Nakamurella multipartita DSM 44233  Bacteria  normal  normal 
 
 
-
 
NC_013757  Gobs_1300  transcriptional regulator, LuxR family  50.91 
 
 
910 aa  58.9  0.0000005  Geodermatophilus obscurus DSM 43160  Bacteria  normal  0.632041  n/a   
 
 
-
 
NC_007595  Synpcc7942_B2644  response regulator receiver domain-containing protein  39.06 
 
 
235 aa  57.8  0.0000009  Synechococcus elongatus PCC 7942  Bacteria  normal  normal 
 
 
-
 
NC_009380  Strop_2761  regulatory protein, LuxR  53.57 
 
 
943 aa  57.8  0.0000009  Salinispora tropica CNB-440  Bacteria  normal  0.208507  hitchhiker  0.00706127 
 
 
-
 
NC_014248  Aazo_4109  LuxR family GAF modulated transcriptional regulator  45.76 
 
 
256 aa  57.4  0.000001  'Nostoc azollae' 0708  Bacteria  normal  0.721487  n/a   
 
 
-
 
NC_013159  Svir_29900  transcriptional regulator, luxR family  33.14 
 
 
855 aa  57.8  0.000001  Saccharomonospora viridis DSM 43017  Bacteria  normal  normal  0.500705 
 
 
-
 
NC_013093  Amir_1970  transcriptional regulator, LuxR family  48.21 
 
 
835 aa  57.4  0.000001  Actinosynnema mirum DSM 43827  Bacteria  decreased coverage  0.0000157383  n/a   
 
 
-
 
NC_013131  Caci_0135  transcriptional regulator, LuxR family  52.94 
 
 
1052 aa  56.6  0.000002  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal 
 
 
-
 
NC_013131  Caci_1892  transcriptional regulator, LuxR family  30.08 
 
 
997 aa  57  0.000002  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal 
 
 
-
 
NC_009972  Haur_0983  two component LuxR family transcriptional regulator  49.06 
 
 
213 aa  57  0.000002  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  n/a   
 
 
-
 
NC_013595  Sros_5800  ATPase-like protein  37.4 
 
 
919 aa  56.6  0.000002  Streptosporangium roseum DSM 43021  Bacteria  normal  normal  0.168685 
 
 
-
 
NC_002976  SERP1981  transcriptional regulatory protein DegU, putative  40.58 
 
 
218 aa  56.2  0.000003  Staphylococcus epidermidis RP62A  Bacteria  normal  n/a   
 
 
-
 
NC_013510  Tcur_1998  transcriptional regulator, LuxR family  52.73 
 
 
956 aa  56.2  0.000003  Thermomonospora curvata DSM 43183  Bacteria  normal  0.0120259  n/a   
 
 
-
 
NC_009632  SaurJH1_2463  response regulator receiver  49.06 
 
 
217 aa  55.8  0.000003  Staphylococcus aureus subsp. aureus JH1  Bacteria  normal  n/a   
 
 
-
 
NC_009487  SaurJH9_2415  two component LuxR family transcriptional regulator  49.06 
 
 
217 aa  55.8  0.000003  Staphylococcus aureus subsp. aureus JH9  Bacteria  normal  n/a   
 
 
-
 
NC_013521  Sked_17030  response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain  51.79 
 
 
907 aa  55.8  0.000004  Sanguibacter keddieii DSM 10542  Bacteria  normal  0.758711  normal 
 
 
-
 
NC_011729  PCC7424_3106  GAF modulated transcriptional regulator, LuxR family  39.68 
 
 
239 aa  55.5  0.000004  Cyanothece sp. PCC 7424  Bacteria  n/a    normal 
 
 
-
 
NC_013441  Gbro_4161  regulatory protein LuxR  47.17 
 
 
893 aa  55.5  0.000005  Gordonia bronchialis DSM 43247  Bacteria  normal  0.339617  n/a   
 
 
-
 
NC_012803  Mlut_02970  response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain  50 
 
 
227 aa  55.5  0.000005  Micrococcus luteus NCTC 2665  Bacteria  normal  0.611463  n/a   
 
 
-
 
NC_009953  Sare_4559  LuxR family transcriptional regulator  43.55 
 
 
877 aa  55.5  0.000005  Salinispora arenicola CNS-205  Bacteria  normal  normal  0.0332938 
 
 
-
 
NC_009338  Mflv_1156  regulatory protein, LuxR  45.45 
 
 
900 aa  55.5  0.000005  Mycobacterium gilvum PYR-GCK  Bacteria  normal  normal  0.0131958 
 
 
-
 
NC_013595  Sros_3785  ATPase-like protein  46.75 
 
 
937 aa  55.1  0.000006  Streptosporangium roseum DSM 43021  Bacteria  normal  0.114558  normal 
 
 
-
 
NC_013947  Snas_5019  transcriptional regulator, LuxR family  48.21 
 
 
916 aa  55.1  0.000006  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  normal  0.385321 
 
 
-
 
NC_013595  Sros_4896  ATPase-like protein  50 
 
 
957 aa  54.7  0.000007  Streptosporangium roseum DSM 43021  Bacteria  normal  0.0338073  normal  0.537271 
 
 
-
 
NC_008148  Rxyl_3188  LuxR family transcriptional regulator  45.83 
 
 
368 aa  54.7  0.000007  Rubrobacter xylanophilus DSM 9941  Bacteria  normal  0.0110301  n/a   
 
 
-
 
NC_013131  Caci_5781  transcriptional regulator, LuxR family  45.16 
 
 
895 aa  54.7  0.000007  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal 
 
 
-
 
NC_013093  Amir_0513  two component transcriptional regulator, LuxR family  36.73 
 
 
209 aa  55.1  0.000007  Actinosynnema mirum DSM 43827  Bacteria  normal  0.52986  n/a   
 
 
-
 
NC_002936  DET0663  LuxR family DNA-binding response regulator  47.46 
 
 
224 aa  54.7  0.000008  Dehalococcoides ethenogenes 195  Bacteria  normal  n/a   
 
 
-
 
NC_002936  DET0697  LuxR family DNA-binding response regulator  47.46 
 
 
224 aa  54.7  0.000008  Dehalococcoides ethenogenes 195  Bacteria  normal  n/a   
 
 
-
 
NC_013131  Caci_4197  transcriptional regulator, LuxR family  49.09 
 
 
998 aa  54.7  0.000008  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal 
 
 
-
 
NC_012850  Rleg_1563  multi-sensor signal transduction multi-kinase  25.23 
 
 
1822 aa  54.3  0.000009  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal  0.0557891 
 
 
-
 
NC_011886  Achl_3561  transcriptional regulator, LuxR family  48.21 
 
 
908 aa  53.9  0.00001  Arthrobacter chlorophenolicus A6  Bacteria  n/a    normal 
 
 
-
 
NC_013159  Svir_19250  transcriptional regulator, LuxR family  42.86 
 
 
894 aa  53.9  0.00001  Saccharomonospora viridis DSM 43017  Bacteria  normal  0.368916  normal  0.454776 
 
 
-
 
NC_013093  Amir_2409  two component transcriptional regulator, LuxR family  56.6 
 
 
221 aa  53.9  0.00001  Actinosynnema mirum DSM 43827  Bacteria  hitchhiker  0.000000055116  n/a   
 
 
-
 
NC_013521  Sked_35370  response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain  49.18 
 
 
881 aa  54.3  0.00001  Sanguibacter keddieii DSM 10542  Bacteria  normal  0.705533  normal  0.60935 
 
 
-
 
NC_007948  Bpro_3193  LuxR family transcriptional regulator  43.56 
 
 
895 aa  53.9  0.00001  Polaromonas sp. JS666  Bacteria  normal  normal 
 
 
-
 
NC_008146  Mmcs_0780  LuxR family transcriptional regulator  47.06 
 
 
921 aa  53.9  0.00001  Mycobacterium sp. MCS  Bacteria  normal  n/a   
 
 
-
 
NC_013510  Tcur_4682  transcriptional regulator, LuxR family  48.08 
 
 
940 aa  53.9  0.00001  Thermomonospora curvata DSM 43183  Bacteria  normal  n/a   
 
 
-
 
NC_013093  Amir_2716  transcriptional regulator, LuxR family  53.97 
 
 
941 aa  54.3  0.00001  Actinosynnema mirum DSM 43827  Bacteria  decreased coverage  0.0000419619  n/a   
 
 
-
 
NC_008699  Noca_1438  response regulator receiver  44.93 
 
 
213 aa  54.3  0.00001  Nocardioides sp. JS614  Bacteria  normal  0.494689  n/a   
 
 
-
 
NC_008705  Mkms_0795  regulatory protein, LuxR  47.06 
 
 
921 aa  53.9  0.00001  Mycobacterium sp. KMS  Bacteria  normal  0.397823  normal  0.131546 
 
 
-
 
NC_013131  Caci_3624  transcriptional regulator, LuxR family  33.91 
 
 
927 aa  53.9  0.00001  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal 
 
 
-
 
NC_009077  Mjls_0776  regulatory protein, LuxR  47.06 
 
 
921 aa  53.9  0.00001  Mycobacterium sp. JLS  Bacteria  normal  normal 
 
 
-
 
NC_013510  Tcur_0848  transcriptional regulator, LuxR family  29.17 
 
 
954 aa  53.9  0.00001  Thermomonospora curvata DSM 43183  Bacteria  normal  n/a   
 
 
-
 
NC_009438  Sputcn32_0534  response regulator receiver protein  41.94 
 
 
200 aa  54.3  0.00001  Shewanella putrefaciens CN-32  Bacteria  normal  n/a   
 
 
-
 
NC_007413  Ava_2254  LuxR family transcriptional regulator  43.64 
 
 
224 aa  53.1  0.00002  Anabaena variabilis ATCC 29413  Bacteria  decreased coverage  0.000000750634  normal 
 
 
-
 
NC_008254  Meso_2457  LuxR family transcriptional regulator  46.03 
 
 
554 aa  53.9  0.00002  Chelativorans sp. BNC1  Bacteria  normal  n/a   
 
 
-
 
NC_013595  Sros_5515  response regulator receiver protein  45.45 
 
 
879 aa  53.5  0.00002  Streptosporangium roseum DSM 43021  Bacteria  normal  0.0430285  normal  0.701277 
 
 
-
 
NC_010816  BLD_1769  putative response regulator  49.02 
 
 
231 aa  53.5  0.00002  Bifidobacterium longum DJO10A  Bacteria  normal  n/a   
 
 
-
 
NC_013595  Sros_3795  ATPase-like protein  43.86 
 
 
925 aa  53.1  0.00002  Streptosporangium roseum DSM 43021  Bacteria  normal  0.978971  normal 
 
 
-
 
NC_013525  Tter_0300  two component transcriptional regulator, LuxR family  44.44 
 
 
224 aa  53.5  0.00002  Thermobaculum terrenum ATCC BAA-798  Bacteria  n/a    n/a   
 
 
-
 
NC_008726  Mvan_0620  response regulator receiver protein  47.27 
 
 
843 aa  53.1  0.00002  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  normal  0.184079 
 
 
-
 
NC_013595  Sros_1417  response regulator receiver protein  42.03 
 
 
234 aa  53.1  0.00002  Streptosporangium roseum DSM 43021  Bacteria  normal  normal  0.0224272 
 
 
-
 
NC_013757  Gobs_0707  two component transcriptional regulator, LuxR family  49.02 
 
 
270 aa  53.5  0.00002  Geodermatophilus obscurus DSM 43160  Bacteria  normal  n/a   
 
 
-
 
NC_009338  Mflv_0277  response regulator receiver protein  44.62 
 
 
833 aa  53.1  0.00002  Mycobacterium gilvum PYR-GCK  Bacteria  normal  normal 
 
 
-
 
NC_013172  Bfae_11600  response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain  40.51 
 
 
225 aa  53.9  0.00002  Brachybacterium faecium DSM 4810  Bacteria  decreased coverage  0.00120804  n/a   
 
 
-
 
NC_009455  DehaBAV1_0632  two component LuxR family transcriptional regulator  43.08 
 
 
224 aa  53.5  0.00002  Dehalococcoides sp. BAV1  Bacteria  hitchhiker  0.00385785  n/a   
 
 
-
 
NC_003909  BCE_1238  competence protein A, putative  42.65 
 
 
219 aa  52.8  0.00003  Bacillus cereus ATCC 10987  Bacteria  decreased coverage  0.00092764  n/a   
 
 
-
 
NC_013161  Cyan8802_1838  two component transcriptional regulator, LuxR family  41.79 
 
 
231 aa  52.8  0.00003  Cyanothece sp. PCC 8802  Bacteria  normal  normal 
 
 
-
 
NC_013174  Jden_2514  two component transcriptional regulator, LuxR family  40 
 
 
230 aa  52.8  0.00003  Jonesia denitrificans DSM 20603  Bacteria  normal  0.135771  normal  0.887193 
 
 
-
 
NC_007333  Tfu_2278  LuxR response regulator receiver  43.86 
 
 
217 aa  52.8  0.00003  Thermobifida fusca YX  Bacteria  normal  n/a   
 
 
-
 
NC_013521  Sked_26900  response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain  42.19 
 
 
247 aa  53.1  0.00003  Sanguibacter keddieii DSM 10542  Bacteria  hitchhiker  0.00793239  normal  0.935402 
 
 
-
 
NC_013172  Bfae_02400  response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain  45 
 
 
255 aa  53.1  0.00003  Brachybacterium faecium DSM 4810  Bacteria  normal  n/a   
 
 
-
 
NC_013173  Dbac_2905  transcriptional regulator, LuxR family  34.33 
 
 
335 aa  52.8  0.00003  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  n/a   
 
 
-
 
NC_011726  PCC8801_1812  two component transcriptional regulator, LuxR family  41.79 
 
 
231 aa  52.8  0.00003  Cyanothece sp. PCC 8801  Bacteria  n/a    n/a   
 
 
-
 
NC_009665  Shew185_0451  response regulator receiver protein  41.94 
 
 
200 aa  52.8  0.00003  Shewanella baltica OS185  Bacteria  normal  n/a   
 
 
-
 
NC_014210  Ndas_2024  two component transcriptional regulator, LuxR family  52.94 
 
 
220 aa  52.8  0.00003  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  0.876474  normal 
 
 
-
 
NC_014210  Ndas_4595  transcriptional regulator, LuxR family  42.86 
 
 
995 aa  52.8  0.00003  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  0.131343  normal 
 
 
-
 
NC_013739  Cwoe_4976  two component transcriptional regulator, LuxR family  51.92 
 
 
218 aa  52.8  0.00003  Conexibacter woesei DSM 14684  Bacteria  normal  0.289575  normal  0.034027 
 
 
-
 
NC_013204  Elen_0565  two component transcriptional regulator, LuxR family  44.07 
 
 
213 aa  53.1  0.00003  Eggerthella lenta DSM 2243  Bacteria  normal  normal 
 
 
-
 
NC_009565  TBFG_12510  LuxR family transcriptional regulator  48.15 
 
 
1137 aa  52.8  0.00003  Mycobacterium tuberculosis F11  Bacteria  hitchhiker  0.00000000000000380393  normal 
 
 
-
 
NC_013131  Caci_5878  two component transcriptional regulator, LuxR family  43.55 
 
 
441 aa  52.4  0.00004  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal  0.464013 
 
 
-
 
NC_010501  PputW619_0230  ATPase domain-containing protein  27.08 
 
 
1685 aa  52.4  0.00004  Pseudomonas putida W619  Bacteria  normal  0.59916  normal  0.455487 
 
 
-
 
NC_008146  Mmcs_1370  LuxR family transcriptional regulator  45.28 
 
 
881 aa  52.4  0.00004  Mycobacterium sp. MCS  Bacteria  normal  n/a   
 
 
-
 
NC_013501  Rmar_1005  two component transcriptional regulator, LuxR family  45.45 
 
 
211 aa  52.4  0.00004  Rhodothermus marinus DSM 4252  Bacteria  normal  n/a   
 
 
-
 
NC_008541  Arth_2998  two component LuxR family transcriptional regulator  49.02 
 
 
228 aa  52.4  0.00004  Arthrobacter sp. FB24  Bacteria  normal  n/a   
 
 
-
 
NC_013159  Svir_27950  response regulator containing a CheY-like receiver domain protein and an HTH DNA-binding domain protein  49.06 
 
 
923 aa  52.4  0.00004  Saccharomonospora viridis DSM 43017  Bacteria  normal  0.81499  normal  0.031015 
 
 
-
 
NC_008705  Mkms_1388  LuxR family transcriptional regulator  45.28 
 
 
881 aa  52.4  0.00004  Mycobacterium sp. KMS  Bacteria  normal  0.0315811  normal 
 
 
-
 
NC_009077  Mjls_1404  LuxR family transcriptional regulator  45.28 
 
 
876 aa  52.4  0.00004  Mycobacterium sp. JLS  Bacteria  normal  normal 
 
 
-
 
NC_009338  Mflv_4474  regulatory protein, LuxR  46.3 
 
 
977 aa  52.4  0.00004  Mycobacterium gilvum PYR-GCK  Bacteria  normal  decreased coverage  0.0017385 
 
 
-
 
NC_009338  Mflv_4504  regulatory protein, LuxR  40.79 
 
 
929 aa  52.4  0.00004  Mycobacterium gilvum PYR-GCK  Bacteria  normal  normal 
 
 
-
 
NC_011886  Achl_2710  two component transcriptional regulator, LuxR family  49.02 
 
 
226 aa  52  0.00005  Arthrobacter chlorophenolicus A6  Bacteria  n/a    normal  0.0104012 
 
 
-
 
NC_011898  Ccel_1863  two component transcriptional regulator, LuxR family  44 
 
 
216 aa  52.4  0.00005  Clostridium cellulolyticum H10  Bacteria  hitchhiker  0.00000548978  n/a   
 
 
-
 
NC_011663  Sbal223_0478  two component transcriptional regulator, LuxR family  41.94 
 
 
200 aa  52  0.00005  Shewanella baltica OS223  Bacteria  normal  normal 
 
 
-
 
NC_013947  Snas_1757  transcriptional regulator, LuxR family  51.85 
 
 
993 aa  52  0.00005  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.790916  normal  0.333807 
 
 
-
 
NC_013170  Ccur_06630  response regulator containing a CheY-like receiver domain protein and an HTH DNA-binding domain protein  46.15 
 
 
215 aa  52  0.00005  Cryptobacterium curtum DSM 15641  Bacteria  normal  0.252447  normal  0.303532 
 
 
-
 
NC_013530  Xcel_3197  transcriptional regulator, LuxR family  50.98 
 
 
876 aa  52  0.00005  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  n/a   
 
 
-
 
NC_009052  Sbal_3862  response regulator receiver protein  41.94 
 
 
200 aa  52  0.00005  Shewanella baltica OS155  Bacteria  normal  n/a   
 
 
-
 
NC_009675  Anae109_3668  response regulator receiver protein  50.98 
 
 
541 aa  52  0.00005  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  0.563914  normal 
 
 
-
 
NC_007908  Rfer_3768  LuxR family transcriptional regulator  48.33 
 
 
231 aa  51.6  0.00006  Rhodoferax ferrireducens T118  Bacteria  normal  n/a   
 
 
-
 
NC_013739  Cwoe_0968  transcriptional regulator, LuxR family  46.15 
 
 
938 aa  52  0.00006  Conexibacter woesei DSM 14684  Bacteria  normal  normal 
 
 
-
 
NC_013595  Sros_8714  response regulator receiver protein  45.45 
 
 
936 aa  51.6  0.00006  Streptosporangium roseum DSM 43021  Bacteria  normal  normal 
 
 
-
 
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