More than 300 homologs were found in PanDaTox collection
for query gene Caci_5878 on replicon NC_013131
Organism: Catenulispora acidiphila DSM 44928



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_013131  Caci_5878  two component transcriptional regulator, LuxR family  100 
 
 
441 aa  815    Catenulispora acidiphila DSM 44928  Bacteria  normal  normal  0.464013 
 
 
-
 
NC_013947  Snas_1903  two component transcriptional regulator, LuxR family  74.66 
 
 
225 aa  217  2.9999999999999998e-55  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.202425  normal  0.182857 
 
 
-
 
NC_013947  Snas_2557  two component transcriptional regulator, LuxR family  58.97 
 
 
224 aa  178  2e-43  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.231398  normal  0.0978001 
 
 
-
 
NC_013131  Caci_8900  two component transcriptional regulator, LuxR family  65.75 
 
 
221 aa  177  3e-43  Catenulispora acidiphila DSM 44928  Bacteria  normal  0.967084  normal 
 
 
-
 
NC_013595  Sros_3244  response regulator receiver protein  65.07 
 
 
218 aa  175  9.999999999999999e-43  Streptosporangium roseum DSM 43021  Bacteria  hitchhiker  0.000568428  normal  0.332742 
 
 
-
 
NC_013739  Cwoe_1616  two component transcriptional regulator, LuxR family  62.94 
 
 
229 aa  173  5.999999999999999e-42  Conexibacter woesei DSM 14684  Bacteria  normal  normal 
 
 
-
 
NC_013131  Caci_0683  two component transcriptional regulator, LuxR family  57.72 
 
 
234 aa  171  2e-41  Catenulispora acidiphila DSM 44928  Bacteria  normal  0.344925  normal 
 
 
-
 
NC_013441  Gbro_3238  regulatory protein LuxR  50 
 
 
228 aa  170  6e-41  Gordonia bronchialis DSM 43247  Bacteria  normal  n/a   
 
 
-
 
NC_009380  Strop_1796  response regulator receiver  51.28 
 
 
230 aa  169  7e-41  Salinispora tropica CNB-440  Bacteria  normal  normal 
 
 
-
 
NC_013510  Tcur_0110  two component transcriptional regulator, LuxR family  58.16 
 
 
222 aa  168  1e-40  Thermomonospora curvata DSM 43183  Bacteria  normal  n/a   
 
 
-
 
NC_013510  Tcur_2302  two component transcriptional regulator, LuxR family  58.33 
 
 
226 aa  167  2.9999999999999998e-40  Thermomonospora curvata DSM 43183  Bacteria  normal  0.0191252  n/a   
 
 
-
 
NC_013947  Snas_4946  two component transcriptional regulator, LuxR family  59.44 
 
 
224 aa  167  2.9999999999999998e-40  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.13115  normal 
 
 
-
 
NC_014165  Tbis_1846  LuxR family two component transcriptional regulator  56.85 
 
 
226 aa  166  9e-40  Thermobispora bispora DSM 43833  Bacteria  normal  0.699471  normal 
 
 
-
 
NC_013131  Caci_0956  two component transcriptional regulator, LuxR family  60.42 
 
 
221 aa  163  5.0000000000000005e-39  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal 
 
 
-
 
NC_014210  Ndas_2087  two component transcriptional regulator, LuxR family  60.84 
 
 
247 aa  163  7e-39  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  0.73112  normal 
 
 
-
 
NC_009664  Krad_1198  two component transcriptional regulator, LuxR family  57.82 
 
 
225 aa  162  9e-39  Kineococcus radiotolerans SRS30216  Bacteria  normal  0.109916  normal  0.0247339 
 
 
-
 
NC_013595  Sros_1523  response regulator receiver protein  52.51 
 
 
215 aa  162  1e-38  Streptosporangium roseum DSM 43021  Bacteria  normal  0.894169  normal  0.0152488 
 
 
-
 
NC_013093  Amir_6235  two component transcriptional regulator, LuxR family  58.9 
 
 
215 aa  161  2e-38  Actinosynnema mirum DSM 43827  Bacteria  normal  0.502704  n/a   
 
 
-
 
NC_013595  Sros_5905  response regulator receiver protein  56.55 
 
 
227 aa  160  4e-38  Streptosporangium roseum DSM 43021  Bacteria  normal  0.0252894  normal  0.145246 
 
 
-
 
NC_014210  Ndas_3601  two component transcriptional regulator, LuxR family  56.85 
 
 
222 aa  159  7e-38  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  0.324048  normal 
 
 
-
 
NC_013947  Snas_2037  two component transcriptional regulator, LuxR family  55.63 
 
 
225 aa  159  8e-38  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  normal  0.137578 
 
 
-
 
NC_013131  Caci_7415  two component transcriptional regulator, LuxR family  50.29 
 
 
228 aa  159  1e-37  Catenulispora acidiphila DSM 44928  Bacteria  normal  0.933403  normal 
 
 
-
 
NC_013595  Sros_5619  response regulator receiver protein  60.96 
 
 
226 aa  158  2e-37  Streptosporangium roseum DSM 43021  Bacteria  normal  0.0556461  normal  0.802866 
 
 
-
 
NC_009953  Sare_1782  two component LuxR family transcriptional regulator  55.26 
 
 
230 aa  158  2e-37  Salinispora arenicola CNS-205  Bacteria  normal  hitchhiker  0.0025253 
 
 
-
 
NC_013595  Sros_7301  response regulator receiver protein  57.53 
 
 
220 aa  157  2e-37  Streptosporangium roseum DSM 43021  Bacteria  normal  normal 
 
 
-
 
NC_013510  Tcur_2233  two component transcriptional regulator, LuxR family  60.54 
 
 
232 aa  157  5.0000000000000005e-37  Thermomonospora curvata DSM 43183  Bacteria  hitchhiker  0.00197033  n/a   
 
 
-
 
NC_013131  Caci_7812  two component transcriptional regulator, LuxR family  57.45 
 
 
227 aa  155  9e-37  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal 
 
 
-
 
NC_013595  Sros_8793  response regulator receiver protein  55.17 
 
 
221 aa  156  9e-37  Streptosporangium roseum DSM 43021  Bacteria  normal  0.321987  normal 
 
 
-
 
NC_013131  Caci_6963  two component transcriptional regulator, LuxR family  55.32 
 
 
225 aa  155  2e-36  Catenulispora acidiphila DSM 44928  Bacteria  normal  0.029709  normal 
 
 
-
 
NC_013947  Snas_1740  two component transcriptional regulator, LuxR family  54.48 
 
 
228 aa  155  2e-36  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  normal 
 
 
-
 
NC_013947  Snas_3359  two component transcriptional regulator, LuxR family  52.98 
 
 
219 aa  155  2e-36  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.0172663  normal 
 
 
-
 
NC_013093  Amir_2232  two component transcriptional regulator, LuxR family  59.15 
 
 
302 aa  155  2e-36  Actinosynnema mirum DSM 43827  Bacteria  normal  0.501029  n/a   
 
 
-
 
NC_013947  Snas_4662  two component transcriptional regulator, LuxR family  56.03 
 
 
221 aa  154  2e-36  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.142047  hitchhiker  0.00679998 
 
 
-
 
NC_014211  Ndas_4872  two component transcriptional regulator, LuxR family  56.94 
 
 
232 aa  154  2.9999999999999998e-36  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  0.247388  normal 
 
 
-
 
NC_013441  Gbro_4119  response regulator receiver  54.23 
 
 
230 aa  154  2.9999999999999998e-36  Gordonia bronchialis DSM 43247  Bacteria  normal  n/a   
 
 
-
 
NC_008697  Noca_4902  response regulator receiver  56.74 
 
 
216 aa  153  5e-36  Nocardioides sp. JS614  Bacteria  normal  0.443208  normal  0.676579 
 
 
-
 
NC_012669  Bcav_0102  two component transcriptional regulator, LuxR family  52.2 
 
 
221 aa  153  5e-36  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.0637251  normal 
 
 
-
 
NC_013131  Caci_6049  two component transcriptional regulator, LuxR family  61.97 
 
 
224 aa  153  5.9999999999999996e-36  Catenulispora acidiphila DSM 44928  Bacteria  normal  0.764436  normal 
 
 
-
 
NC_013530  Xcel_1619  two component transcriptional regulator, LuxR family  55.48 
 
 
234 aa  153  7e-36  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  n/a   
 
 
-
 
NC_013739  Cwoe_4855  two component transcriptional regulator, LuxR family  57.55 
 
 
244 aa  152  8.999999999999999e-36  Conexibacter woesei DSM 14684  Bacteria  normal  0.093919  normal 
 
 
-
 
NC_013093  Amir_2737  two component transcriptional regulator, LuxR family  55.24 
 
 
227 aa  152  1e-35  Actinosynnema mirum DSM 43827  Bacteria  normal  0.418014  n/a   
 
 
-
 
NC_013595  Sros_5304  response regulator receiver protein  55.78 
 
 
220 aa  152  2e-35  Streptosporangium roseum DSM 43021  Bacteria  normal  0.128918  normal 
 
 
-
 
NC_013595  Sros_4468  response regulator receiver protein  52.98 
 
 
219 aa  151  2e-35  Streptosporangium roseum DSM 43021  Bacteria  normal  0.0876299  normal  0.32237 
 
 
-
 
NC_013947  Snas_5644  two component transcriptional regulator, LuxR family  56.16 
 
 
225 aa  151  2e-35  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  normal  0.114252 
 
 
-
 
NC_013721  HMPREF0424_0644  response regulator receiver domain protein  47.55 
 
 
261 aa  150  3e-35  Gardnerella vaginalis 409-05  Bacteria  n/a    normal  0.520039 
 
 
-
 
NC_013204  Elen_2822  two component transcriptional regulator, LuxR family  53.42 
 
 
228 aa  151  3e-35  Eggerthella lenta DSM 2243  Bacteria  normal  0.0415698  normal  0.590713 
 
 
-
 
NC_013172  Bfae_11600  response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain  56.29 
 
 
225 aa  150  4e-35  Brachybacterium faecium DSM 4810  Bacteria  decreased coverage  0.00120804  n/a   
 
 
-
 
NC_008541  Arth_4134  two component LuxR family transcriptional regulator  47.95 
 
 
250 aa  150  4e-35  Arthrobacter sp. FB24  Bacteria  normal  n/a   
 
 
-
 
NC_013131  Caci_8412  two component transcriptional regulator, LuxR family  53.06 
 
 
239 aa  150  6e-35  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal 
 
 
-
 
NC_008699  Noca_1020  response regulator receiver  54.48 
 
 
218 aa  149  7e-35  Nocardioides sp. JS614  Bacteria  normal  0.648692  n/a   
 
 
-
 
NC_013510  Tcur_4491  two component transcriptional regulator, LuxR family  55.63 
 
 
225 aa  149  7e-35  Thermomonospora curvata DSM 43183  Bacteria  normal  n/a   
 
 
-
 
NC_013595  Sros_4577  response regulator receiver protein  54.61 
 
 
223 aa  149  9e-35  Streptosporangium roseum DSM 43021  Bacteria  normal  normal  0.172592 
 
 
-
 
NC_014210  Ndas_1972  two component transcriptional regulator, LuxR family  51.7 
 
 
217 aa  149  1.0000000000000001e-34  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  unclonable  0.0000000794288  unclonable  0.0000000332591 
 
 
-
 
NC_014158  Tpau_2872  two component transcriptional regulator, LuxR family  54.84 
 
 
218 aa  149  1.0000000000000001e-34  Tsukamurella paurometabola DSM 20162  Bacteria  normal  n/a   
 
 
-
 
NC_012669  Bcav_4002  two component transcriptional regulator, LuxR family  58.45 
 
 
222 aa  148  2.0000000000000003e-34  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.947887  normal  0.770727 
 
 
-
 
NC_013739  Cwoe_0549  two component transcriptional regulator, LuxR family  50.7 
 
 
220 aa  148  2.0000000000000003e-34  Conexibacter woesei DSM 14684  Bacteria  normal  normal 
 
 
-
 
NC_013131  Caci_1616  two component transcriptional regulator, LuxR family  53.85 
 
 
226 aa  147  3e-34  Catenulispora acidiphila DSM 44928  Bacteria  normal  0.0231149  normal  0.0629914 
 
 
-
 
NC_013595  Sros_9329  response regulator receiver protein  56.34 
 
 
217 aa  147  3e-34  Streptosporangium roseum DSM 43021  Bacteria  normal  normal 
 
 
-
 
NC_013131  Caci_7105  two component transcriptional regulator, LuxR family  50.66 
 
 
241 aa  147  4.0000000000000006e-34  Catenulispora acidiphila DSM 44928  Bacteria  normal  0.106023  normal  0.469545 
 
 
-
 
NC_013595  Sros_3251  response regulator receiver protein  53.38 
 
 
221 aa  147  4.0000000000000006e-34  Streptosporangium roseum DSM 43021  Bacteria  normal  0.0793449  normal 
 
 
-
 
NC_009664  Krad_4217  two component transcriptional regulator, LuxR family  55.33 
 
 
225 aa  147  4.0000000000000006e-34  Kineococcus radiotolerans SRS30216  Bacteria  decreased coverage  0.000816589  normal  0.757819 
 
 
-
 
NC_009953  Sare_4860  two component LuxR family transcriptional regulator  54.09 
 
 
219 aa  147  5e-34  Salinispora arenicola CNS-205  Bacteria  normal  0.452521  normal  0.0798716 
 
 
-
 
NC_009380  Strop_2458  response regulator receiver  52.56 
 
 
220 aa  146  6e-34  Salinispora tropica CNB-440  Bacteria  normal  0.0554598  normal 
 
 
-
 
NC_013159  Svir_26840  response regulator containing a CheY-like receiver domain protein and an HTH DNA-binding domain protein  52.78 
 
 
239 aa  146  6e-34  Saccharomonospora viridis DSM 43017  Bacteria  normal  0.274056  normal  0.228776 
 
 
-
 
NC_013595  Sros_0232  response regulator receiver protein  53.85 
 
 
213 aa  146  6e-34  Streptosporangium roseum DSM 43021  Bacteria  normal  normal 
 
 
-
 
NC_013739  Cwoe_1269  two component transcriptional regulator, LuxR family  53.74 
 
 
226 aa  145  1e-33  Conexibacter woesei DSM 14684  Bacteria  normal  hitchhiker  0.00432991 
 
 
-
 
NC_013131  Caci_7160  two component transcriptional regulator, LuxR family  55.32 
 
 
224 aa  145  1e-33  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal 
 
 
-
 
NC_014165  Tbis_0951  LuxR family two component transcriptional regulator  53.52 
 
 
221 aa  145  1e-33  Thermobispora bispora DSM 43833  Bacteria  normal  0.392411  normal  0.343359 
 
 
-
 
NC_010816  BLD_0671  putative response regulator  48.26 
 
 
248 aa  145  1e-33  Bifidobacterium longum DJO10A  Bacteria  normal  0.248332  n/a   
 
 
-
 
NC_013131  Caci_6094  two component transcriptional regulator, LuxR family  57.34 
 
 
235 aa  145  1e-33  Catenulispora acidiphila DSM 44928  Bacteria  normal  0.634688  normal  0.121163 
 
 
-
 
NC_013093  Amir_2225  two component transcriptional regulator, LuxR family  50.28 
 
 
209 aa  145  2e-33  Actinosynnema mirum DSM 43827  Bacteria  normal  n/a   
 
 
-
 
NC_009921  Franean1_4684  two component LuxR family transcriptional regulator  51.75 
 
 
223 aa  144  2e-33  Frankia sp. EAN1pec  Bacteria  normal  0.51425  normal 
 
 
-
 
NC_013521  Sked_08490  response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain  45.14 
 
 
236 aa  144  3e-33  Sanguibacter keddieii DSM 10542  Bacteria  normal  0.199706  normal  0.526513 
 
 
-
 
NC_013947  Snas_3639  two component transcriptional regulator, LuxR family  55.56 
 
 
215 aa  144  3e-33  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.274763  normal 
 
 
-
 
NC_013170  Ccur_01320  response regulator containing a CheY-like receiver domain protein and an HTH DNA-binding domain protein  47.77 
 
 
261 aa  144  3e-33  Cryptobacterium curtum DSM 15641  Bacteria  normal  normal 
 
 
-
 
NC_012669  Bcav_2822  two component transcriptional regulator, LuxR family  51.01 
 
 
231 aa  144  3e-33  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.311075  normal 
 
 
-
 
NC_013131  Caci_7843  two component transcriptional regulator, LuxR family  54.86 
 
 
231 aa  144  4e-33  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal  0.176081 
 
 
-
 
NC_011831  Cagg_2804  two component transcriptional regulator, LuxR family  49.32 
 
 
216 aa  144  4e-33  Chloroflexus aggregans DSM 9485  Bacteria  normal  0.995251  normal  0.311692 
 
 
-
 
NC_013131  Caci_6705  two component transcriptional regulator, LuxR family  50 
 
 
258 aa  143  6e-33  Catenulispora acidiphila DSM 44928  Bacteria  normal  0.318103  normal  0.0731204 
 
 
-
 
NC_011886  Achl_3912  two component transcriptional regulator, LuxR family  51.39 
 
 
230 aa  143  6e-33  Arthrobacter chlorophenolicus A6  Bacteria  n/a    normal 
 
 
-
 
NC_013235  Namu_0651  two component transcriptional regulator, LuxR family  46.75 
 
 
241 aa  142  9e-33  Nakamurella multipartita DSM 44233  Bacteria  normal  normal 
 
 
-
 
NC_009921  Franean1_7161  two component LuxR family transcriptional regulator  53.79 
 
 
225 aa  142  9e-33  Frankia sp. EAN1pec  Bacteria  normal  0.0588186  normal  0.118819 
 
 
-
 
NC_007333  Tfu_0767  LuxR response regulator receiver  52.11 
 
 
221 aa  142  9.999999999999999e-33  Thermobifida fusca YX  Bacteria  normal  0.88397  n/a   
 
 
-
 
NC_013947  Snas_4575  two component transcriptional regulator, LuxR family  58.22 
 
 
224 aa  142  9.999999999999999e-33  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.703378  normal  0.112036 
 
 
-
 
NC_009664  Krad_2599  two component transcriptional regulator, LuxR family  51.97 
 
 
211 aa  142  9.999999999999999e-33  Kineococcus radiotolerans SRS30216  Bacteria  normal  normal 
 
 
-
 
NC_014151  Cfla_0648  two component transcriptional regulator, LuxR family  59.42 
 
 
211 aa  142  9.999999999999999e-33  Cellulomonas flavigena DSM 20109  Bacteria  normal  0.0377209  hitchhiker  0.00104431 
 
 
-
 
NC_013739  Cwoe_3768  two component transcriptional regulator, LuxR family  54.93 
 
 
223 aa  142  9.999999999999999e-33  Conexibacter woesei DSM 14684  Bacteria  normal  0.28303  normal  0.763501 
 
 
-
 
NC_014210  Ndas_1477  two component transcriptional regulator, LuxR family  51.88 
 
 
234 aa  142  9.999999999999999e-33  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  0.594471  normal 
 
 
-
 
NC_012669  Bcav_2449  two component transcriptional regulator, LuxR family  58.27 
 
 
220 aa  142  9.999999999999999e-33  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.729355  normal 
 
 
-
 
NC_013739  Cwoe_0356  two component transcriptional regulator, LuxR family  54.93 
 
 
220 aa  141  1.9999999999999998e-32  Conexibacter woesei DSM 14684  Bacteria  normal  0.165726  normal  0.0985551 
 
 
-
 
NC_013595  Sros_8243  response regulator receiver protein  54.79 
 
 
217 aa  141  1.9999999999999998e-32  Streptosporangium roseum DSM 43021  Bacteria  normal  0.931194  normal  0.230681 
 
 
-
 
NC_014151  Cfla_2391  two component transcriptional regulator, LuxR family  49.69 
 
 
239 aa  141  1.9999999999999998e-32  Cellulomonas flavigena DSM 20109  Bacteria  normal  0.0696687  hitchhiker  0.00128542 
 
 
-
 
NC_014210  Ndas_4652  two component transcriptional regulator, LuxR family  50.35 
 
 
219 aa  142  1.9999999999999998e-32  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  0.0949639  normal 
 
 
-
 
NC_013947  Snas_0541  two component transcriptional regulator, LuxR family  50.34 
 
 
221 aa  141  1.9999999999999998e-32  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.318618  normal 
 
 
-
 
NC_013159  Svir_39200  response regulator containing a CheY-like receiver domain protein and an HTH DNA-binding domain protein  52.78 
 
 
218 aa  142  1.9999999999999998e-32  Saccharomonospora viridis DSM 43017  Bacteria  normal  normal  0.254077 
 
 
-
 
NC_014210  Ndas_2780  two component transcriptional regulator, LuxR family  52.48 
 
 
219 aa  141  3e-32  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  0.855193  normal  0.402473 
 
 
-
 
NC_009921  Franean1_1652  two component LuxR family transcriptional regulator  56.74 
 
 
217 aa  141  3e-32  Frankia sp. EAN1pec  Bacteria  normal  0.495895  normal  0.106337 
 
 
-
 
NC_012669  Bcav_0335  two component transcriptional regulator, LuxR family  55.56 
 
 
220 aa  141  3e-32  Beutenbergia cavernae DSM 12333  Bacteria  normal  normal 
 
 
-
 
NC_013739  Cwoe_0262  two component transcriptional regulator, LuxR family  57.14 
 
 
225 aa  140  3.9999999999999997e-32  Conexibacter woesei DSM 14684  Bacteria  normal  0.0721339  normal  0.623073 
 
 
-
 
NC_009664  Krad_1350  two component transcriptional regulator, LuxR family  50 
 
 
249 aa  140  3.9999999999999997e-32  Kineococcus radiotolerans SRS30216  Bacteria  normal  0.691965  normal 
 
 
-
 
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