| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Caci_5781 |
|---|
| Symbol | |
|---|
| ID | 8337142 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Catenulispora acidiphila DSM 44928 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013131 |
|---|
| Strand | + |
|---|
| Start bp | 6680237 |
|---|
| End bp | 6682924 |
|---|
| Gene Length | 2688 bp |
|---|
| Protein Length | 895 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 75% |
|---|
| IMG OID | 644958885 |
|---|
| Product | transcriptional regulator, LuxR family |
|---|
| Protein accession | YP_003116480 |
|---|
| Protein GI | 256394916 |
|---|
| COG category | [K] Transcription
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG2197] Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 30 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGTCGACA CTCTGATCGG GCGTGAGTGG CACCTGAACG TCCTGCGGGC GTCCGTCGAA
AGGCTCCGGA CCGGTTCCGG GGCGGCGGTG GCGCTGGCCG GCGAACCGGG GATCGGGAAG
AGCGCGCTGT TGTGGGCGGC GGGGAACGCG GCACGCGCCG CCGGGGTGGC CGTGGTGGCC
GTCCGGGGCG CGGATCTGGC GCAGAGCCCC GATGTCCATG CCGCGTGCGC GCATGTCGTC
GACGCCGTCG GGGCGCACGC CGCCGCCGGC CGGCCGGTCG TGGTGACCGT CGACGACATC
CATCTGCTCG GCACGGACGA GCCGGGTCTG GTCGGGCGGC TGCTGGGCTC CACGGCCCAC
GGACCGGTGC TGTGCGTCCT GGCCTACCGA AGACGCCAAC TCGCGCCCCG CCCCGCCGCG
ACGCTCGCCG ACGCCTCGAC CGGGTTGCTG CGCCTCGCGC CCCTGGATCC GCTCACCCGC
GAACAAGCCA CGGAGCTGCT CGGCGAGCAC CCGGACGCCG ACGAGATCCA CCGACAGGCG
GCGGGCAATC CGCAGTACAT CAAGGTCCTG AGTGCCCTGC GCGACACCGG CGCCACCGCC
GAGGCCGGCG CCTCGATCTT CGGGGAGCTG ACCGGTCTGG AGCCCGAGGC GCTGGCGGCG
ATACGGGCCG CGGCGGTGCT CGGCGAGCCG TTCGGCGTGC CGCTGCTGGC TGACATCGCC
GCACTCGACG AGCCGGCGGC GGTGCGTGCG CTGGACCAGC TCACCGGTGT GGACCTGATA
CGCCCGGCCG AGCACGGATC GCAGCTGGCG CTGCGGCATC GCGCGGTCGG CGAGGCCGTG
TACGAACGGC TCGAGCCCAG CCTCCGCTTC GCCCTGCACC GCCGGGCCGC CGACGCGCTC
GCCGCGACCG GCGCCCCGGT CGCCCACCGC GCGCGCCACG TCACCCGCGC CGCGGATGCG
CAGAACCCTG AGCACCTGAC GACGCTGATC GCCGCTGCCC GTGCCGTCAT CTACGCCTCG
CCGGCGACCG CGGCCGAGTA CCTGCAGTCC GCTTTGCCGT TGCTGCGCGG GGAGCACGGC
CACGCGCACG AGGTCCACGT CCTGCTCGCC CGCGCGCGCC TGCTGTCGGG TGAGTTCACC
GAGGGCCGGG CCCTGCTCGA CGCGCTCAGC TCGGCCGGTC CGGAGCAGCC CGACGGCGCG
GCGCTGGACT CCACCCGCAT CGAGCGGCGT CTGGGCCGGC CCTTCGAAGC CGGCGCGCTG
GCCCGCTCCG GTCTGGCCGC GCTGGCCGAG ACCGACTCGG CGACCGCCGC CGCGCTGCAC
GCCGAACTGG CCGACACGGC GTACGACGTG CAGGACTACG AGACCTCCCG GATGCACGCC
GAGACCGCCG CAGCCATCGC CGCCCGGCAC GGCGACCGCG TCGGCGAGGC CCACGCCCTG
GCGCAGTCGG CGCTGGGCCA CCTGTTCACC AGCGACGAGG CGACCGCTCT GGCCCGCGCC
GCGCGGGCGG CCGAACTCAT CGACGCCACC CCCGACACCA TGCTGCTGAC CAACCTGGCC
GCACCGCTGC AACTGGGCAT GACAGAGGGG TTGCTCGGGC GGCTGACCGA CAGCGAGCGC
CACCTGGCGC GCGCCGAGGT GCTGAGCTGG CGCACCGGTC AGACACACCT GGACGGCGAG
TTGTTGACCG TGCTGGCCAA TGCCCAGTGC CGGCTCGGCA AGCTGGGCAC GGCCCTGGGC
ACGCTGGAGC GCGTGGCCCG GCGGCACGAG GGGATCGGCG AGCACGGCGG CAACGCCCTG
GAGGCGGGGG TCGCGGCGAA TCTGCGCGCC GCCGCGCTGC ACTGGCGCGA CGAGCCCGGC
GACGCCGAGC AGGTGCGGGT GGCGCTGGAC CGCGCGCTGG CGATCGCGAA CGACTCCTCC
ACCAGCTGGG CCATCGCAGT GCGCTGTTTC CACGCCGAGC TGGTCCTGTT CACCGGCGAT
CCGGTGCGGG CCCGCTCGCT GCTGCTCGAG GTCGCCGGCG AGGACCTGTC CGGGATCAGC
CCGTGGCGCC GTCCCCGCTG GTGCGACACC CTGGCCGAGG CCGCGCTGGC GGTGGGCGAC
GGCGCGGAGG CCGACCACTG GGCCGCCGTC GCCGAGCGGG CTCCGCAGCA GCCTTCGACG
CTGCGTCCCT TCGCGCTGCG CGCCGGGATG TGGGCGCACG CCGCGCTCGG CGAGCACGAG
GCGGCGCTGA CGCGCGCGCA GGAGTCGGTC CGGGAGTTCA CGGCGCGCGG GGAGCGGATC
GAGGTGTGCC GCACGCTGCT GGCCGCGTCC GAGTTCGCAC TGCGCGCCGG GCGTGCCGAT
CTCGTGGCCG GCTGGCTGGA CCGCGTCGCT TTGCTGGCCG AACAGTGCGG TGCGGGGCGT
CTGGCGACGG AGGCGGTCCG GCACCGCTCG CGCCTGGCCG CCCTCGCCGA CGCCCAGCCG
GATCCGCAGT CCACCTCGGC GCCCCTGACG GCGCGCGAAC GCGAGATCGC GAACTTGGTG
AGCACGGGCA TGACCAACAC CGCGATCGCC GAGAAGCTGT TCTTGAGCGT GCGGACCGTG
GAATCGCACC TGCGCCAGAT CTACCGCAAG CTCGATGTGC CGAACCGCGC CGCGCTGACC
CGTGCGCTGC TCGACGCCCG CCGTGCGTCG CGCCCGCCCA CGCCCTGA
|
|---|
| Protein sequence | MVDTLIGREW HLNVLRASVE RLRTGSGAAV ALAGEPGIGK SALLWAAGNA ARAAGVAVVA
VRGADLAQSP DVHAACAHVV DAVGAHAAAG RPVVVTVDDI HLLGTDEPGL VGRLLGSTAH
GPVLCVLAYR RRQLAPRPAA TLADASTGLL RLAPLDPLTR EQATELLGEH PDADEIHRQA
AGNPQYIKVL SALRDTGATA EAGASIFGEL TGLEPEALAA IRAAAVLGEP FGVPLLADIA
ALDEPAAVRA LDQLTGVDLI RPAEHGSQLA LRHRAVGEAV YERLEPSLRF ALHRRAADAL
AATGAPVAHR ARHVTRAADA QNPEHLTTLI AAARAVIYAS PATAAEYLQS ALPLLRGEHG
HAHEVHVLLA RARLLSGEFT EGRALLDALS SAGPEQPDGA ALDSTRIERR LGRPFEAGAL
ARSGLAALAE TDSATAAALH AELADTAYDV QDYETSRMHA ETAAAIAARH GDRVGEAHAL
AQSALGHLFT SDEATALARA ARAAELIDAT PDTMLLTNLA APLQLGMTEG LLGRLTDSER
HLARAEVLSW RTGQTHLDGE LLTVLANAQC RLGKLGTALG TLERVARRHE GIGEHGGNAL
EAGVAANLRA AALHWRDEPG DAEQVRVALD RALAIANDSS TSWAIAVRCF HAELVLFTGD
PVRARSLLLE VAGEDLSGIS PWRRPRWCDT LAEAALAVGD GAEADHWAAV AERAPQQPST
LRPFALRAGM WAHAALGEHE AALTRAQESV REFTARGERI EVCRTLLAAS EFALRAGRAD
LVAGWLDRVA LLAEQCGAGR LATEAVRHRS RLAALADAQP DPQSTSAPLT AREREIANLV
STGMTNTAIA EKLFLSVRTV ESHLRQIYRK LDVPNRAALT RALLDARRAS RPPTP
|
|---|
| |