Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Caci_3154 |
Symbol | |
ID | 8334507 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Catenulispora acidiphila DSM 44928 |
Kingdom | Bacteria |
Replicon accession | NC_013131 |
Strand | + |
Start bp | 3466420 |
End bp | 3469689 |
Gene Length | 3270 bp |
Protein Length | 1089 aa |
Translation table | 11 |
GC content | 76% |
IMG OID | 644956301 |
Product | transcriptional regulator, LuxR family |
Protein accession | YP_003113904 |
Protein GI | 256392340 |
COG category | [K] Transcription [T] Signal transduction mechanisms |
COG ID | [COG2197] Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 12 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 24 |
Fosmid unclonability p-value | 0.639432 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | GTGCTTGCCA TCGGTTCGCC ACAAGCCTGG CAGGCCCTGG TCGGGCGGGA AGCCCAGGCC GAGCGGATGG CCGAAGCCGT CGCGGCGCTG GCCTCGGGCC GGGGCGCCGT GCTGGAGATC GCCGGGGACC CCGGGATGGG CAAGACCCGG CTGCTGGGCC GGCTGGCGCA GCTCGCCTCG GGCCAGGGCG CCCGCGTGGC CCGGTCCACC GCGTTGCGCG GCAACACCAT CGCGCGCCAG CTCTTCCGCG ACGCCTGGGC CGACGTGCCG GCTCCGGACG CCGCCGACGC GGACGACGAC GAGGGCTTCC GCCGCGTCCG CTCCGCCCTG TCCGACTGGG CCGCCGACCC GGTCGGGATC GGCGGCGCGG TGATCTTCGA CGACGTCCAC CTCGCCGACG AGGCCTCCAC CCGGCTGCTC GCGCGCCTGA TCCGCACCCC GGTGCCCGGT CCGCTGCTGA TGGCCATCGG GCACTGCCCG CGGCGCACCG GCTCGCTGCT GCTGGAAGCC CTCGACGACG GCTCCCGCAC CGGCACCGTG GTCCGGGTCG AGCTCGGCGC CCTGGACGTC ACCGCGGTCA ACCAGCTGCT GTCCGCCTGG TCCGGCACGC GGGACCTGGA CCCCGGCTAC CTGGAGCAGA TCCGCGCCGC CTCCGACGGC AACCCGCGCT ATCTGCGGGT GCTCAACGCC GCCGGCTGGC GTCCGGAGCT GTGGCCGGAC AGCCCCGGCG AGGACACCGG CGCGCTGCTG CGCGAGGGCG CCTCGATGGC CGCCGAGCTG GACGCGCTGT CCGCCGCCGA GACGTCGGTG GTCACGGCGG CCGCGGTGCT GGGCGGCTCT TTCCGGCCCG AGGACGTCGC AGTAATCTGT GCCGCTATAA CACCTGGTGC CGCTATAACA TCGGGCGCCG CCGTCACACC CGGCGCTTCC ACGGCCTCCA GCGCCTCCGC GACCCTCGGC CTCGGTCTGG CCGGCATCCT GGACGCCCTG GACGACCTGG TCCGCGCCGA CGTCGTCCGG CACATCGCCC CCGGCGCCCG CTTCGCCTTC CGGCATCCGC TGCTCGGGCA CGTCGCCCAC GAGCGCGCGT CGCTGCCCAC CCTCCTGGCC GCCCACCAGC GCGCGCTGGA CCTGCTCAAG GCGCGCGGCG CGGGCATGGT GGACCTGGCC AAGCACGCCG AGCACCTGGT CGGCACCGAC GCCGCGGCCG CCGCCCCGCT GCTCGCGCGC GGCGCCGGCG AGATCCTGCC CGACGCCCCG GAGACCGCCG TGCGCTGGCT GCGCCTGGCG TTGCAGACCC CGGTGGGGGA GCGGCCCAGC GCCGAACGCG ACGCCCTGAT GCTCGAGTGC TGCCGCGCGC TGTCCGCCGC CGGTCGCTTC GAGGAGGCTC GCGCGCTGGC CCACGACGTC CTGCGCGACG ACACCTGGCT GACCGGTCCG CTGCGCCAAC GCGCCTACGC GATGCGGATC GCCGCCGAAC GCCAGCTCGG CCGCTACGAC GAGGCCTCGG CGGTGGCCAG CGCCGCGATC GAGGCGCTGC CCCGGCCGCT GACCGCCGGC GCCGCCGAGC TCGCCTTCGA ATACGGCGCG CTGCACCTGT ACCGCGGCAC GTACGCGCTG GCGCGCCCGG TCGTGCAGGA AGTCGCCGCC GCGGTGAAGG CCGCTTCCGA GGGGACGGCA GCGGGAGCCG CCGGAGCTGC TGGAGCCACC GGATTCGCGG ACGTCGCCGT GGCGCGCGCA GGGTCCCGAA CATCCGCCGC GAGCGCCCCC GACGAGGCCG GACCGCTCGG CGCATCGCAT GACGTTGACA CCTATTTGAT CGATATACCT TCGGCGCCCG AAGCCCGCGC GGCGGCGGCG GTCCGCGTCC TGGCCGCGTT CGGCGACGCC TTCCTCGGCG AGACCGCCGA CGCGATCCCC GCCCTGGTCG AGAGCGCCCG CCTGGTCGAC GGCCTGCCCG ACGCCACCGC CGCCCGCAAC CCCGAACTGC TGGCCATGCT CGGCTGCGGC GAGATGTTCA TGGAGGGCTA CACCGCCGCC GCCCGCCACC TGCGCCGCTG CCTGGCCATC GCCCGCAAGG GCGGCCCGCA GCAGATGAAA CTCAACGTCC TGCTCGGCCT GGCCTTCATC GACCAGCAGA CCGGCAACCT GCGCCGCTGC GAGGAGCGCG CCGAGGAGGC CAGCCGGGTG GCCCGCGCCA CCGGCGCCGA CGATGGCGTC AGCATGAGCG AGGCGCTGCG CGTCGGCGCC ATGATCTGGA CCCGCCCGCG CGCCGAGTCC GCCGCCGTCG TGGCCGCCGC CGAGCAGGCG CTCCGCTCCG CCCGCCCCGG CAACGGCTGG TGGTCCGGCT CGGCGGCGAT GCAGCTGGCC GTGGTCCGCA TGGTCACCGG CGACGCCGCC GGCTGCGTGG ACGCGCTGCT GGAAGGCGGC GGCGGCCCGG AGTTGCGCAA GCTCCAGCCC GCCTACCGTC CGATGCTGCT GTCGATGCTG TCCACCGCCG CCCTGCGCTG CGGCCGCCCG GATCTGGCAC GCCAGGCAGC CCAGGATGCC GAGCAGGCAG CGGAGGCCTC GGGTCTGTCC GTACAACGTG CGTACGTAGT CCGCGCCCAA GCCGCCCTGC GTGCCGCAGA AGGCGACCAC GCCACCGCGG CCCAGCTCTT CGAGCAAGCC GCCCTCGGCT TCCGCCGCGC CAACCGCCCG GTACAGCACG CCTGGACCCT GCTCGCCGGC AGCGCCTCAG CGATGCAGGC TCTGGGTCCG ACGGTCGCGG CGACCTGGCT GGACACCGCC GAGGAAGTCG CACGCGTCCA CGGTGCGGCG CGCATCGCAG AAGACGTCGC CGACGTCCGG ACGCGGTTGC TCACCGGCGG GGCGGCGCGT CCGGCGGCGC AGCCCGCCGC GACGGCGCTC GCCGGCGCGG TGGTGGTCGT GACCCCGACC GCGGTCGCCG CCGGTGCGGT CGCACCGGTC GGCGCGGCAG CGGCAGCGGC AGTGATGGCG GTGCCGGCGG CCACGGACGG CGCGCCGGTC GACCCGGCGC CGCCCGTCGC GCTCCAGCCG GACGTCCGCG ACCTGCTGAC CACCCGCGAA CGCGAGATAG CAGCCCTGGT CGCCACCGGC CGCCGCAGCC GCGCGATCGC CGACGAACTC TTCCTGAGCC ATCGCACGGT GGAGACCCAC CTGGCGCGCA TCTATCGGAA GTTGAACGTT TCGTCGAGGA CCGCGCTGGC GCACCTTCTT CAGGGTACTG ATTCCCCAGG ACCGGACTGA
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Protein sequence | MLAIGSPQAW QALVGREAQA ERMAEAVAAL ASGRGAVLEI AGDPGMGKTR LLGRLAQLAS GQGARVARST ALRGNTIARQ LFRDAWADVP APDAADADDD EGFRRVRSAL SDWAADPVGI GGAVIFDDVH LADEASTRLL ARLIRTPVPG PLLMAIGHCP RRTGSLLLEA LDDGSRTGTV VRVELGALDV TAVNQLLSAW SGTRDLDPGY LEQIRAASDG NPRYLRVLNA AGWRPELWPD SPGEDTGALL REGASMAAEL DALSAAETSV VTAAAVLGGS FRPEDVAVIC AAITPGAAIT SGAAVTPGAS TASSASATLG LGLAGILDAL DDLVRADVVR HIAPGARFAF RHPLLGHVAH ERASLPTLLA AHQRALDLLK ARGAGMVDLA KHAEHLVGTD AAAAAPLLAR GAGEILPDAP ETAVRWLRLA LQTPVGERPS AERDALMLEC CRALSAAGRF EEARALAHDV LRDDTWLTGP LRQRAYAMRI AAERQLGRYD EASAVASAAI EALPRPLTAG AAELAFEYGA LHLYRGTYAL ARPVVQEVAA AVKAASEGTA AGAAGAAGAT GFADVAVARA GSRTSAASAP DEAGPLGASH DVDTYLIDIP SAPEARAAAA VRVLAAFGDA FLGETADAIP ALVESARLVD GLPDATAARN PELLAMLGCG EMFMEGYTAA ARHLRRCLAI ARKGGPQQMK LNVLLGLAFI DQQTGNLRRC EERAEEASRV ARATGADDGV SMSEALRVGA MIWTRPRAES AAVVAAAEQA LRSARPGNGW WSGSAAMQLA VVRMVTGDAA GCVDALLEGG GGPELRKLQP AYRPMLLSML STAALRCGRP DLARQAAQDA EQAAEASGLS VQRAYVVRAQ AALRAAEGDH ATAAQLFEQA ALGFRRANRP VQHAWTLLAG SASAMQALGP TVAATWLDTA EEVARVHGAA RIAEDVADVR TRLLTGGAAR PAAQPAATAL AGAVVVVTPT AVAAGAVAPV GAAAAAAVMA VPAATDGAPV DPAPPVALQP DVRDLLTTRE REIAALVATG RRSRAIADEL FLSHRTVETH LARIYRKLNV SSRTALAHLL QGTDSPGPD
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