Gene Caci_3154 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCaci_3154 
Symbol 
ID8334507 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameCatenulispora acidiphila DSM 44928 
KingdomBacteria 
Replicon accessionNC_013131 
Strand
Start bp3466420 
End bp3469689 
Gene Length3270 bp 
Protein Length1089 aa 
Translation table11 
GC content76% 
IMG OID644956301 
Producttranscriptional regulator, LuxR family 
Protein accessionYP_003113904 
Protein GI256392340 
COG category[K] Transcription
[T] Signal transduction mechanisms 
COG ID[COG2197] Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones12 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones24 
Fosmid unclonability p-value0.639432 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGCTTGCCA TCGGTTCGCC ACAAGCCTGG CAGGCCCTGG TCGGGCGGGA AGCCCAGGCC 
GAGCGGATGG CCGAAGCCGT CGCGGCGCTG GCCTCGGGCC GGGGCGCCGT GCTGGAGATC
GCCGGGGACC CCGGGATGGG CAAGACCCGG CTGCTGGGCC GGCTGGCGCA GCTCGCCTCG
GGCCAGGGCG CCCGCGTGGC CCGGTCCACC GCGTTGCGCG GCAACACCAT CGCGCGCCAG
CTCTTCCGCG ACGCCTGGGC CGACGTGCCG GCTCCGGACG CCGCCGACGC GGACGACGAC
GAGGGCTTCC GCCGCGTCCG CTCCGCCCTG TCCGACTGGG CCGCCGACCC GGTCGGGATC
GGCGGCGCGG TGATCTTCGA CGACGTCCAC CTCGCCGACG AGGCCTCCAC CCGGCTGCTC
GCGCGCCTGA TCCGCACCCC GGTGCCCGGT CCGCTGCTGA TGGCCATCGG GCACTGCCCG
CGGCGCACCG GCTCGCTGCT GCTGGAAGCC CTCGACGACG GCTCCCGCAC CGGCACCGTG
GTCCGGGTCG AGCTCGGCGC CCTGGACGTC ACCGCGGTCA ACCAGCTGCT GTCCGCCTGG
TCCGGCACGC GGGACCTGGA CCCCGGCTAC CTGGAGCAGA TCCGCGCCGC CTCCGACGGC
AACCCGCGCT ATCTGCGGGT GCTCAACGCC GCCGGCTGGC GTCCGGAGCT GTGGCCGGAC
AGCCCCGGCG AGGACACCGG CGCGCTGCTG CGCGAGGGCG CCTCGATGGC CGCCGAGCTG
GACGCGCTGT CCGCCGCCGA GACGTCGGTG GTCACGGCGG CCGCGGTGCT GGGCGGCTCT
TTCCGGCCCG AGGACGTCGC AGTAATCTGT GCCGCTATAA CACCTGGTGC CGCTATAACA
TCGGGCGCCG CCGTCACACC CGGCGCTTCC ACGGCCTCCA GCGCCTCCGC GACCCTCGGC
CTCGGTCTGG CCGGCATCCT GGACGCCCTG GACGACCTGG TCCGCGCCGA CGTCGTCCGG
CACATCGCCC CCGGCGCCCG CTTCGCCTTC CGGCATCCGC TGCTCGGGCA CGTCGCCCAC
GAGCGCGCGT CGCTGCCCAC CCTCCTGGCC GCCCACCAGC GCGCGCTGGA CCTGCTCAAG
GCGCGCGGCG CGGGCATGGT GGACCTGGCC AAGCACGCCG AGCACCTGGT CGGCACCGAC
GCCGCGGCCG CCGCCCCGCT GCTCGCGCGC GGCGCCGGCG AGATCCTGCC CGACGCCCCG
GAGACCGCCG TGCGCTGGCT GCGCCTGGCG TTGCAGACCC CGGTGGGGGA GCGGCCCAGC
GCCGAACGCG ACGCCCTGAT GCTCGAGTGC TGCCGCGCGC TGTCCGCCGC CGGTCGCTTC
GAGGAGGCTC GCGCGCTGGC CCACGACGTC CTGCGCGACG ACACCTGGCT GACCGGTCCG
CTGCGCCAAC GCGCCTACGC GATGCGGATC GCCGCCGAAC GCCAGCTCGG CCGCTACGAC
GAGGCCTCGG CGGTGGCCAG CGCCGCGATC GAGGCGCTGC CCCGGCCGCT GACCGCCGGC
GCCGCCGAGC TCGCCTTCGA ATACGGCGCG CTGCACCTGT ACCGCGGCAC GTACGCGCTG
GCGCGCCCGG TCGTGCAGGA AGTCGCCGCC GCGGTGAAGG CCGCTTCCGA GGGGACGGCA
GCGGGAGCCG CCGGAGCTGC TGGAGCCACC GGATTCGCGG ACGTCGCCGT GGCGCGCGCA
GGGTCCCGAA CATCCGCCGC GAGCGCCCCC GACGAGGCCG GACCGCTCGG CGCATCGCAT
GACGTTGACA CCTATTTGAT CGATATACCT TCGGCGCCCG AAGCCCGCGC GGCGGCGGCG
GTCCGCGTCC TGGCCGCGTT CGGCGACGCC TTCCTCGGCG AGACCGCCGA CGCGATCCCC
GCCCTGGTCG AGAGCGCCCG CCTGGTCGAC GGCCTGCCCG ACGCCACCGC CGCCCGCAAC
CCCGAACTGC TGGCCATGCT CGGCTGCGGC GAGATGTTCA TGGAGGGCTA CACCGCCGCC
GCCCGCCACC TGCGCCGCTG CCTGGCCATC GCCCGCAAGG GCGGCCCGCA GCAGATGAAA
CTCAACGTCC TGCTCGGCCT GGCCTTCATC GACCAGCAGA CCGGCAACCT GCGCCGCTGC
GAGGAGCGCG CCGAGGAGGC CAGCCGGGTG GCCCGCGCCA CCGGCGCCGA CGATGGCGTC
AGCATGAGCG AGGCGCTGCG CGTCGGCGCC ATGATCTGGA CCCGCCCGCG CGCCGAGTCC
GCCGCCGTCG TGGCCGCCGC CGAGCAGGCG CTCCGCTCCG CCCGCCCCGG CAACGGCTGG
TGGTCCGGCT CGGCGGCGAT GCAGCTGGCC GTGGTCCGCA TGGTCACCGG CGACGCCGCC
GGCTGCGTGG ACGCGCTGCT GGAAGGCGGC GGCGGCCCGG AGTTGCGCAA GCTCCAGCCC
GCCTACCGTC CGATGCTGCT GTCGATGCTG TCCACCGCCG CCCTGCGCTG CGGCCGCCCG
GATCTGGCAC GCCAGGCAGC CCAGGATGCC GAGCAGGCAG CGGAGGCCTC GGGTCTGTCC
GTACAACGTG CGTACGTAGT CCGCGCCCAA GCCGCCCTGC GTGCCGCAGA AGGCGACCAC
GCCACCGCGG CCCAGCTCTT CGAGCAAGCC GCCCTCGGCT TCCGCCGCGC CAACCGCCCG
GTACAGCACG CCTGGACCCT GCTCGCCGGC AGCGCCTCAG CGATGCAGGC TCTGGGTCCG
ACGGTCGCGG CGACCTGGCT GGACACCGCC GAGGAAGTCG CACGCGTCCA CGGTGCGGCG
CGCATCGCAG AAGACGTCGC CGACGTCCGG ACGCGGTTGC TCACCGGCGG GGCGGCGCGT
CCGGCGGCGC AGCCCGCCGC GACGGCGCTC GCCGGCGCGG TGGTGGTCGT GACCCCGACC
GCGGTCGCCG CCGGTGCGGT CGCACCGGTC GGCGCGGCAG CGGCAGCGGC AGTGATGGCG
GTGCCGGCGG CCACGGACGG CGCGCCGGTC GACCCGGCGC CGCCCGTCGC GCTCCAGCCG
GACGTCCGCG ACCTGCTGAC CACCCGCGAA CGCGAGATAG CAGCCCTGGT CGCCACCGGC
CGCCGCAGCC GCGCGATCGC CGACGAACTC TTCCTGAGCC ATCGCACGGT GGAGACCCAC
CTGGCGCGCA TCTATCGGAA GTTGAACGTT TCGTCGAGGA CCGCGCTGGC GCACCTTCTT
CAGGGTACTG ATTCCCCAGG ACCGGACTGA
 
Protein sequence
MLAIGSPQAW QALVGREAQA ERMAEAVAAL ASGRGAVLEI AGDPGMGKTR LLGRLAQLAS 
GQGARVARST ALRGNTIARQ LFRDAWADVP APDAADADDD EGFRRVRSAL SDWAADPVGI
GGAVIFDDVH LADEASTRLL ARLIRTPVPG PLLMAIGHCP RRTGSLLLEA LDDGSRTGTV
VRVELGALDV TAVNQLLSAW SGTRDLDPGY LEQIRAASDG NPRYLRVLNA AGWRPELWPD
SPGEDTGALL REGASMAAEL DALSAAETSV VTAAAVLGGS FRPEDVAVIC AAITPGAAIT
SGAAVTPGAS TASSASATLG LGLAGILDAL DDLVRADVVR HIAPGARFAF RHPLLGHVAH
ERASLPTLLA AHQRALDLLK ARGAGMVDLA KHAEHLVGTD AAAAAPLLAR GAGEILPDAP
ETAVRWLRLA LQTPVGERPS AERDALMLEC CRALSAAGRF EEARALAHDV LRDDTWLTGP
LRQRAYAMRI AAERQLGRYD EASAVASAAI EALPRPLTAG AAELAFEYGA LHLYRGTYAL
ARPVVQEVAA AVKAASEGTA AGAAGAAGAT GFADVAVARA GSRTSAASAP DEAGPLGASH
DVDTYLIDIP SAPEARAAAA VRVLAAFGDA FLGETADAIP ALVESARLVD GLPDATAARN
PELLAMLGCG EMFMEGYTAA ARHLRRCLAI ARKGGPQQMK LNVLLGLAFI DQQTGNLRRC
EERAEEASRV ARATGADDGV SMSEALRVGA MIWTRPRAES AAVVAAAEQA LRSARPGNGW
WSGSAAMQLA VVRMVTGDAA GCVDALLEGG GGPELRKLQP AYRPMLLSML STAALRCGRP
DLARQAAQDA EQAAEASGLS VQRAYVVRAQ AALRAAEGDH ATAAQLFEQA ALGFRRANRP
VQHAWTLLAG SASAMQALGP TVAATWLDTA EEVARVHGAA RIAEDVADVR TRLLTGGAAR
PAAQPAATAL AGAVVVVTPT AVAAGAVAPV GAAAAAAVMA VPAATDGAPV DPAPPVALQP
DVRDLLTTRE REIAALVATG RRSRAIADEL FLSHRTVETH LARIYRKLNV SSRTALAHLL
QGTDSPGPD