| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Caci_2089 |
|---|
| Symbol | |
|---|
| ID | 8333433 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Catenulispora acidiphila DSM 44928 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013131 |
|---|
| Strand | + |
|---|
| Start bp | 2370268 |
|---|
| End bp | 2373147 |
|---|
| Gene Length | 2880 bp |
|---|
| Protein Length | 959 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 72% |
|---|
| IMG OID | 644955238 |
|---|
| Product | transcriptional regulator, LuxR family |
|---|
| Protein accession | YP_003112849 |
|---|
| Protein GI | 256391285 |
|---|
| COG category | [K] Transcription
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG2197] Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 25 |
|---|
| Fosmid unclonability p-value | 0.840433 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCCACTCA TCAGCCCCGC ACGATTCGAC GGGCCACTGG TGGAACGGGA CGCGCAGATC
GCGCGTCTGG AACAGATCGC GGAGTCGCTG CGCTCGGGGC GGGGGACCGT CCTGGAGATC
GCCGGCGATC CCGGAATGGG GAAGACCAGC CTGCTGGCCG TCCTGGCCGG ACTCCTCGCC
GGAGCCGGAG TACGGGTGGC CCGCGGCCAC GCGATCCGCG GCGACGACGC CCCCGGCCAG
ATCTTCCGCA GCGCCTGGGA GGAACATCCA GGGCTGACCG CGGTGGACCG CAAGGGCGAG
CTGGATCCGC AGTCGGCCGG AACCCTGGCG ACCGGCTGGG CCGCCGGCTC CGGCGGCGCG
GTGGTGCTCG ACGACGTGCA GTGGTGCGAC CCGAAGTCGG TCGACATCGC CGTGCGCCTG
GTGCGCAATC CTGTTGCCGG ACCGTTCCTG CTGGTCTTGG CGCACCGTCC GCGGCAGACG
AATCCGGCGT TGCTGGACGC CCTGGACGAC GGCGTCCGCA TCGGGACCGT GACCCGGATC
GCGGTGCCTC CGCTGAGCAC GGAGGCGATG CGCGAACTCG CCGTCCGCTG GACCGGCGGC
ACGGCGGCGC ACTTCACCGG CCACGACGAA GCCCACGACC GCCGGCTCGG CGACGCGGCC
GGCGGAAGCC CGCGCAATCT GCGGATTCTG CTGGCCGGCG GCTGGGATCC GGTGCTGTGG
CCCTTCCAGG CCGGCGGCGA CCCCGGCGGG CTGTTGCGCG AGGCGGCGGC GCTGACCACC
GAACTCGACC TCCTGTCGCC GGAAGCCGGT GTGGTCCTGC GCGGTGCCGC GGTTCTGGGC
GATCCGTTCC GGCCGGAGGA CGTCACAGAG GTCTGCGAAC TCACAGCCGA CCGCGTCCTG
GCGGCGCTCG CCGAGCTGAC GGAAGCCGAT CTGGTGCGGC GGCGCGGCAA CGGCGAGTTC
GTGTTCCGCG ATCCCGTGCT GGGACACGTC GCCCACGAAC ACTCCAGCCT CTCCCAGCAG
ACGATGGCAC ACCGGCGCGC GCTGGATCTG CTCGTCGGCC GTGGCGCGGC TGCCTCAGCG
TTGGCGCGGC ACGCGGAGCA GCTGCTCGGC ACGGACTCCG CGACCGCCGC GCCGATCCTC
GCGCGGGCTG CCGCCGAGGT GGTGGCCAGC GATCCGGCTG CGGCGGCTCA CTGGTCCGGA
CTGGCGCTCG ACCACATTCC GCATGGCGGG CAGGCGCGTG CGGAGCTGGA GATCCTGCAA
GCTCGAGCAC TGATAGCCGT CGGACGGCTG GACGAAGCCA GGACCCTGGT TCACGAAGTG
CTGGGCCACG TCTCGGAGCT GCCATGGCAG ATCGCGCTTC GGGCGTACGG CGCGGCGGCG
GACGTCGAGC GTTTGCTGTG CCGCTACTCC GAAGCCGAGG CCATCGCGGC TACGGCGCTC
GGACTTCTGC CGGCTCCGGG GGAGGGCGGC GCGCTTCCGC TCGAAGCCGT CACCATGATT
TATGAGTACG CGCTGGTGCA GTCGCTGCGC GGGGACCACA TCCAAGCCCG CGCGATGATC
CGCTCGGCGG TGGACATGAC CGCCCGGCCC GTGCATCCGA CGGAGATCGC GATCCGCTGT
CTGGCGGTGT GCCAGGACGC TTATATGGGC AACGTCGCGG TCGCGCTGGA GGAGGCGCGG
CAGTGCACCG GCGTGGTCGA CGCGCTGGCG GATCCGCAGG CGGGTCAGGC TCCTGAGATG
TTCGTGACGC TCGGCGCCGC AGGGCTCTAT CTCGAGCGCT TCGAGGATGC CTCCCGGCAT
CTCAAACGCG GACTGAAGGT CGCCAGCGGC GGTACGCAGC TGCACGTGGT CCTGCACGGA
CTGCTTGGTC TGGCCTCCGT GGACCTGTTC ACCGGGCGGC TGGACACGAT CGCGCAGTGG
GCTGGCCAAG CCGAACAACT CGCGAGCGAT ATCGGGTCCC AGGAAGGCGT CGGGCTGGCC
AAGTCGATCC GCGCCTCGTC GATGATCTGG ACTCAGGGGC GGCGCGACGT CCGGGAAATT
CTGGCGCTCG CCGAGTCTGC GATCGCCGAC GTCGAATCGC ACCGCAGCTG GTGGGCACTC
AGCGCACTCG GGCTGGCAGC CCAAGTACAG CTGCTCGGCG GCGACCCCGA GGGCGCGTTG
CGCACGATGC TGGAGCGCGC CGACGGCCAG GATGTGGCGG TCGCGCAGCC CGCGCTGGAG
CCCTCTCTCA AAGGCCTGAT GGCGATGGCC GCCCTGCGCT GCGGCGATCT GCCGGCGGCG
CGACGCTGGA CCGAGGACGC CGAAGCTGCC GCGTCCCGAC TCTCCCTGAC CGGTCAGACC
GCCGGCGCGA TCCGGGCCCG CGCCGCACTC CACCTGGCCG ACGGCCGCCC CGACCTGGCC
GTGGACCTCT TCGCGCAGGC CGCCGACCGC TTCGACCGCG CCGGCGCCCC GATCCAGCGC
GTCTGGACCC AGGCGATGGG AGCGGCGGCG GCCGACGCGG CCCAGGGCCA CGACGCGGCG
CTGGTCTGGC TGGACGCCGC CTCCGCAGCC GCCGACGCAC TCGGCGCACT GTCGGTACGG
GAGGACACAG CACGCGCTCG GGCCGAGCTG GCGACCGGCA GCCGACCGGA GGGCACGCCG
GCGCGTCCCG ACGACGACGG ACCGCTCGGC ATGCTCAGCG AGCGCGAGCG GGAGATCGCA
GCGCTCGCCG CCGCAGGACT GCGTTCGCGA GAGATCGCCC AGCGCTTGTT CTTGAGCCCG
CGAACGGTCG AGGCGCATTT GGGACGGGTC TATCGCCGCC TCGGAGTCTC GTCGCGGGGC
GAGCTTCCTC GGATCATCGG CAACCGGGGC GGCGAGGGCA GCGCTGACAC GGCGCAGTAG
|
|---|
| Protein sequence | MPLISPARFD GPLVERDAQI ARLEQIAESL RSGRGTVLEI AGDPGMGKTS LLAVLAGLLA
GAGVRVARGH AIRGDDAPGQ IFRSAWEEHP GLTAVDRKGE LDPQSAGTLA TGWAAGSGGA
VVLDDVQWCD PKSVDIAVRL VRNPVAGPFL LVLAHRPRQT NPALLDALDD GVRIGTVTRI
AVPPLSTEAM RELAVRWTGG TAAHFTGHDE AHDRRLGDAA GGSPRNLRIL LAGGWDPVLW
PFQAGGDPGG LLREAAALTT ELDLLSPEAG VVLRGAAVLG DPFRPEDVTE VCELTADRVL
AALAELTEAD LVRRRGNGEF VFRDPVLGHV AHEHSSLSQQ TMAHRRALDL LVGRGAAASA
LARHAEQLLG TDSATAAPIL ARAAAEVVAS DPAAAAHWSG LALDHIPHGG QARAELEILQ
ARALIAVGRL DEARTLVHEV LGHVSELPWQ IALRAYGAAA DVERLLCRYS EAEAIAATAL
GLLPAPGEGG ALPLEAVTMI YEYALVQSLR GDHIQARAMI RSAVDMTARP VHPTEIAIRC
LAVCQDAYMG NVAVALEEAR QCTGVVDALA DPQAGQAPEM FVTLGAAGLY LERFEDASRH
LKRGLKVASG GTQLHVVLHG LLGLASVDLF TGRLDTIAQW AGQAEQLASD IGSQEGVGLA
KSIRASSMIW TQGRRDVREI LALAESAIAD VESHRSWWAL SALGLAAQVQ LLGGDPEGAL
RTMLERADGQ DVAVAQPALE PSLKGLMAMA ALRCGDLPAA RRWTEDAEAA ASRLSLTGQT
AGAIRARAAL HLADGRPDLA VDLFAQAADR FDRAGAPIQR VWTQAMGAAA ADAAQGHDAA
LVWLDAASAA ADALGALSVR EDTARARAEL ATGSRPEGTP ARPDDDGPLG MLSEREREIA
ALAAAGLRSR EIAQRLFLSP RTVEAHLGRV YRRLGVSSRG ELPRIIGNRG GEGSADTAQ
|
|---|
| |