Gene Svir_19250 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSvir_19250 
Symbol 
ID8387252 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSaccharomonospora viridis DSM 43017 
KingdomBacteria 
Replicon accessionNC_013159 
Strand
Start bp2048881 
End bp2051565 
Gene Length2685 bp 
Protein Length894 aa 
Translation table11 
GC content71% 
IMG OID644975990 
Producttranscriptional regulator, LuxR family 
Protein accessionYP_003133772 
Protein GI257055940 
COG category[K] Transcription
[T] Signal transduction mechanisms 
COG ID[COG2197] Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones17 
Plasmid unclonability p-value0.368916 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones23 
Fosmid unclonability p-value0.454776 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGACGGAGC GGTCTTCGAC GTTGATCGGC CGTGACACCG TGCTCGCCGA GCTTCGGGAT 
CAGGCGCGGC GGGTCGGGGA GCACGGGTCA CGGTTCCTGC TGCTCACCGG CGTGTCGGGC
TGTGGTCGTA CGGCGCTGGT GGAACGGTTC GCCGCCCACC ACGACGGGCC CGTGCTCCGC
GCGGTGGGCG CGTCCTGGGA AACCACCCGC GACTACGGAA TCATCGACCA GTTGGCGCCG
GGTGCGGTGG ATGTATCCGA CCCCGTGGCC GCGGCCGAAC GGTTCGCCCG GCACCTCGCC
GGCCTGGCCG GCACGGTGTT GGTGGTCGTG GACGACGCCC ACTGGGCCGA TGAGGCCTCG
CTGCAGACCC TGGCCTCCAC GGTGCGGCAC CATCCCCGGC TGCGGTTGTT GGTGGTGGCC
ACCGCGGTGG AGGGCGACAC GCGGGTTCCC GCCGGGATCG GGGCTTTGCT GCGGCGGATC
GCCACCGTGG AGATCCCGGT CGAACCCCTC ACCGCGGCCG AGGTCGCCGC TGTGGCCGCG
TCCTTCGGGA TCGTCCTGTC CCCACCGGTG GCCGACACGC TCTGCCGACA CACCGGTGGT
CGGGTCCGGT ATGTGCGGGA GTTGTTGCGT GAGGTACCGC GACGAACATG GTCTCGGTTC
GATCCCGTCC TGCCCGCGCC GGCGGCTGTG TCGGCCCGGG TCCGCGACCT GCTGGCGGAC
TGTTCGGATG CGGCGCGCCG TTTCGTGGGC GCGGTCGCCG TGTTGGGTCC TGCTGCGGCG
GTGCGGGAAG CCGCCGCGCT GGCCGAATTG GGCGACGAGG AGGTCCTCGA TGCCGTGGAC
GAGGCCTGCA CCGCCGGGCT TGTGGTGCTC ACCGCGCACG GGCCGGCCGA GATCTCCCCG
GCCGATTCCC TGGTGCGCGC GGCCGTGTTG GAGATCATGG GGCCGGCGGC GGCCGCCCGA
GCGTACCGGC GCGCGGCCGA CCTCGTCGAC GATCGGGTTC GACGGTTGCG CCTGTTGGTG
GCCGCTTCGT TCGCACCCGA CCAGGAGCTG GCGGACCGGC TCGACGCGGT GGCCGCCGAA
CGCGCCGCCG AAGGCGCGTG GGCTGAGGCC GCCTCGCTGT TCACCGATGC GAGCCGGTTG
ACCGAGGATC GGCTGCTGCG CGAACGCAGG CTCACCCGCG CGGTGGACGC GTTGATCGGC
TCCGGCGACG CGTTCGGTGC CGCGGCCTTG GTGCCCGAGG TCGAAAGCCT GCGGGAGACA
CCGTTGCGTA ACGCCGTGCT CGGCTACTTG GCGATCGTGC GTGGCCGGGC CGCGGAGGCC
GAAGCGCGGC TTGACCGTGC CTGGGAGTTG GTCAATGTCG ACCGTGATCC GGACGTCGCC
GCGTTGATCT GTCAACGCCA TGTCCTGCAC GCGTTGGTGC GGTGTCGTCC TGATGAGCTG
GTGGCCTGGG CCGACCGGGC GGTCACACTG GCCGGTCCCG ACGCCCCGGC CGGGATCGAG
GCGGCGGCCA TCCGCGGGCT GGGACTGGCC GCCCGTGGCC GGGTGGAACA GGCCAAAGCC
GCCTACGCCA CGCTGGCCGA CCGTGTGCGC CACGGGGCCC AGGCGCAGCG TGTGCTCATG
GGACGTGGAT GGCTCGATCT CACGCTCGAC CAGGTCGACG ATGCCCGGGC GGCGTTGGAG
ACCGCGGTTC CGACGACCTT CTCCGGAGGG TCCACCCGTA TCTCGCTGTG GGCACGCGCA
TGGCTGGCCC GGGCCCAGTT CCTCGCCGGG GAATGGGACG ACTCCCTGCG CACGGTGGCC
GAGGCGGCGA CACTGCTCGA CCGCACGGGC ATCGTGCTGG CCGGTCCCCT GCTGCACTGG
ACCGGAGCCA CGATCCACGC GCTACGTGGC CAGTGGCGGC AAGCCGAACG ACAACTCCGT
CGCATCGACG CTGTGCCCCA GGAGTATGAG CTCATGCGCC TGTGCGCGTG TCTGGCCCGA
GCCCAGATCG CCGAGGCCCG CGCCGATGCG GCCGGTGTGC TGCGGGCGTT ACGACCCTTG
GCGCAAGGCT GGATCACCAC CCACCTCGAC GACACCGGCT CGTGGCCGTG GGCCGACCTT
TACGCACACG CTTTGGTGCA GCAGAACCGC TACACCGAGG CCGACGAATT CCTCACCCGG
CGGGAAAACC GCGTGGGACT GCGCCACAGC CGCTCCGAAC GGGCACGCTT GGCCGCCGCG
CGCGGCAGGC TGCTCGGCGC CCAAGGTGAC CTCGACCGCG CCATAAACGC CTTCGACCGG
GCGTTGACGT TGTTGGCGGA CCTGCCCCTG CGCTACGACC AGGCCCGGGT CAACTTCGCC
TACGGACAGA CGCTGCGACG CGCGGGCAAA CGACGTGACG CCGACGTGGC GTTGTCCACG
GCGCGCGAGT TGTTCGCGGG ACTCGGCGCG GCCACCTACG TGTCCCGCTG CGACCGCGAA
CTCAAAGCGG GAGGCCAACC CGGGGCGCGC GCCGACACCG AACTCACCCC GCAGGAACAG
GCCGTCTCCC AGTTGGTGGC GCGGGGGCTG TCGAACCGGG AAGTGGCCGC CGAACTGTAT
GTGTCGACGA AAACGGTGCA ATACCACCTG ACCCGCATCT ACGCCAAGCT GGGCATCCGT
TCCCGCGCGG AACTCGCCGC GCTGTGGGGG CGAGCAGGAC TCTGA
 
Protein sequence
MTERSSTLIG RDTVLAELRD QARRVGEHGS RFLLLTGVSG CGRTALVERF AAHHDGPVLR 
AVGASWETTR DYGIIDQLAP GAVDVSDPVA AAERFARHLA GLAGTVLVVV DDAHWADEAS
LQTLASTVRH HPRLRLLVVA TAVEGDTRVP AGIGALLRRI ATVEIPVEPL TAAEVAAVAA
SFGIVLSPPV ADTLCRHTGG RVRYVRELLR EVPRRTWSRF DPVLPAPAAV SARVRDLLAD
CSDAARRFVG AVAVLGPAAA VREAAALAEL GDEEVLDAVD EACTAGLVVL TAHGPAEISP
ADSLVRAAVL EIMGPAAAAR AYRRAADLVD DRVRRLRLLV AASFAPDQEL ADRLDAVAAE
RAAEGAWAEA ASLFTDASRL TEDRLLRERR LTRAVDALIG SGDAFGAAAL VPEVESLRET
PLRNAVLGYL AIVRGRAAEA EARLDRAWEL VNVDRDPDVA ALICQRHVLH ALVRCRPDEL
VAWADRAVTL AGPDAPAGIE AAAIRGLGLA ARGRVEQAKA AYATLADRVR HGAQAQRVLM
GRGWLDLTLD QVDDARAALE TAVPTTFSGG STRISLWARA WLARAQFLAG EWDDSLRTVA
EAATLLDRTG IVLAGPLLHW TGATIHALRG QWRQAERQLR RIDAVPQEYE LMRLCACLAR
AQIAEARADA AGVLRALRPL AQGWITTHLD DTGSWPWADL YAHALVQQNR YTEADEFLTR
RENRVGLRHS RSERARLAAA RGRLLGAQGD LDRAINAFDR ALTLLADLPL RYDQARVNFA
YGQTLRRAGK RRDADVALST ARELFAGLGA ATYVSRCDRE LKAGGQPGAR ADTELTPQEQ
AVSQLVARGL SNREVAAELY VSTKTVQYHL TRIYAKLGIR SRAELAALWG RAGL