Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Caci_0135 |
Symbol | |
ID | 8331460 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Catenulispora acidiphila DSM 44928 |
Kingdom | Bacteria |
Replicon accession | NC_013131 |
Strand | - |
Start bp | 140607 |
End bp | 143765 |
Gene Length | 3159 bp |
Protein Length | 1052 aa |
Translation table | 11 |
GC content | 73% |
IMG OID | 644953302 |
Product | transcriptional regulator, LuxR family |
Protein accession | YP_003110931 |
Protein GI | 256389367 |
COG category | [K] Transcription [T] Signal transduction mechanisms |
COG ID | [COG2197] Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 13 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 36 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGATCGGGC ATGGGGAGCT CGTCGCCGAC CTCACCGCGC GCGCGGCCGA CGCCGTCCCC ACCGTCCTGA CGGCACCACC CGGCCGCGGC AAGTCCGCCC TCCTCGACGC CGTGGCAGAA CCCTGGATCG CCCGCGAGGA CCACGTCGTC TGGCTGACCG CGGCTCCCAC CGACCGCGAC GTCCCCTTCG CCGCCCTCAC CGACCTCCTC ACCGAGGCAC CCGACCTCCC CGAACCTTGG CTCGCGGCCC TCAAGCAAGC CCTCCGCCGG ATACCCGGCA CCCCCGATCG CGTAGCGATC CGCCTCGCCG CACGCGCATG CCTGGACGCG GCAATACCGC CCGACAAAGG CGTCCTGCTC CTGGCCGACG ACCTCCAATG GTGGGACGCG GACAGCCTCG ACGTCCTGGC CCACCTCGCC CGGCACGGCA TCCCGGTCGT CGCGGCAACC CGCCCCGGCG GCCCGGTGGA CTTATTGGGC CGCGACGCCC AAGAAGTCCC AGTCCCCGCA CTGACCGCCG AACAGACCGC GACGCTGTTA CAGGAACGCG GAATCGGCTT CCGCATCGCG GCACGCGTTC ACACCGCAGC CGGCGGAAAC GCCCGGCTGA CCGTGGAAAT CGCCCGCGGC TTCGACGCCA CCTCCGGCGC ACTCGACGCG GTCACGACAC CGGCGGCGGC ACGACGCTGC ATCCGAGGCT GGATCGACGA ACTGCCGACC CCGGACAACG TCTGGCGCAC CCTGCTGATC GCCGCGATCG CCGCCGACCC CGCAATCCCC ACCCTGCGGC GAACCGCGGG CCCAGCCACA CTCGAAGCCC TAGCCTGCGC CGAACAAGCC GGACTGATCA CAGTCGACGT GCACGGCACA GTCACCTTCC CAGCCACAGC AGTCCGCGAC ACAGTCCTCG CCGACGCATC CCAGGAAACC CTCCGCACAG CCCACCTCCT CCTCGCCGAA ACCACCACGG ACCCCACCGC CCGCCTCTGG CACCGCGCCA CCGCCGCCCG CGACCGCCCA GACCTGGAAG TCGCCTCCGA ACTGGCCATC GCCGCCCGAG CAGTACGCCG ACGAGGCGAC CCAGGACGCG CGGCAGAGTT ATGGCTGCTC GCGGCGGAGA TGATGCCGGC ACGCGAAACC ATGGCCGAAA CCACGGACGC CTCGAACGGC TCGCTCGCGC CGCTGCCGGC TCCGGTGAGC GGGACAGCCG ACCGGACGCA GCACGCCGAT CAGCAGCCAG TCGCGCGCGA TGCCAGCGCC GCGCGCCAGC ACGCCACACA CGCGCAGCCG AGTAGCGGCC CGACCGCCAC CACAGGTTCC CTCAGCGCGC CCGATGCCAG CACAACTCGC CACCAAGCCG CGACCGCGCA GCCCGCCGAC ACACCGCCAC AAACCGCAGA CTTCCCCACC AGAGCCACTC GCCAGCCAGC TGCGACCTCG CAGCCGATCA GCGACCCGAC ACCGGCCACC AGCTTCTTCA CCGCTCTCGA TGCCAGCGAC ACTCGCCAGC CAGCCGCGTC CTCCGCACCA GCCGGCAGAC CATCGACCAC CGCAGCCTCC ACCGACCAAC CGCCCCGACC TCCTGCATCG CGCACCACCC CCCGCCCCAC CGCCGTTGCC GCCCTCCTCC TCGCCGCCGC CACCGACGCG GCTGCTGCGG GCCGTCCGCA CCTGGCGCGT ACCGCGGTGG CGCGGCTGGA TCGCACCGAG TCCGATCATG CGGCGCGGGC TCGGGCTCGG TTGGCGGTGG TTGATGCGGC GGGGCAGGCG GTGGGGGGGT TGGATGGGAT TCTGGGGCGG GCGTTGGCTG ATGCTGAGGC GGCGGCTGAT CCGGCTTTGC TCTCCGCCGT GCATCTGCGG GTCGCGTGGC ATGCGCATCT CGCGCTCGGC GATAATCGGC GGGCGCATGA CGCCGCGCGG GCTGCGGTGC GGGCTGCCGA GTTGTCGCAG GATGCTGAGT CGCGGGCTGC CGCGCTGGTC ATGCTGGCGC GCATCGAGCA GTTGCTCGGC GAGTCCTCGT ATCCGCGTGT GCTGCGGCGG GCGTTGGCGC TCAGTCCTGA GCCTCCTGGC GCGCTGCTGA ACTCCCCGCG CTGGCTGAGT GTGCGCTTCG CGCTGTTCGC CGATCAGCTC GACGAAGCGC GCCACCATCT CAGCCAGCTC ACCTCCCACG CCGAGCGCAG CGGCAGCCAC GCTGATCGCG CGCTCCTGCT GCGCGGCGCG GTGGAGATCG ACGCACGCGC CGGCCACGGC GCCGCCGCCA TCCGCAGCGC ACGCCGCCTC GAAGAACTCC CCGGCGCCGA CCGCGCCTCG CCCGGGCCCG TGTGGTTCAC CGCCGCGTTG GCGCAGACGG CCGGCGGCAC GCTGGAGGAG GCGCTGCGCC TCGCCGATCG GGGGACCGCC GCCTCGGCGC AGGAACAGGA CCAGATCTTC CTGACCCGCT GCCTCGCCCT GTCCGGCGGA ATCCGGCTCC TCCTGCGCGA CACCGCAGCG GCCGCCGACG ACCTGAACCG TGTCAGGACC CTGGTAGCGG AGCAGGGCAT CGCCGATCCG GCCGCCGTCC GCTTCCACGC CGACCTCGCC GAGGTCCTGG TCTCGCTCGG CCAGCCCGAC GAGGCAGCCG TGATCGTCAC CGAGACCCGG CGCGCCGCCG AGGAGCTCCG ACGCCGCGGC GTCCTGGCCT CGCTCGACCG AGCCGACGCC GTCATCAAGG CCTCGCAAGG CGATCACGCC CGCGCCGAAG CCCTCCTGCA CCGCGCCGAC CACACCTTCC ACACGCTCGG CCTCCCCCTG GAACGCGGCC GCGTCCTGCT CACCCGCGCG ATCATCGACA AGCGCCGGCG CCGCGCGGCA TCCGCACGCC GCTTCCACGA CCAAGCCACA GCGATCTTCC AGCGCGCGCA GGCGCCGCTC TGGGAACCGG CCGAAGTCGT CACCGAAACG CCGGGACCGG CGCACGGCCC AGGGCAGGGA CCCGCGCCAG ACCTCACCGC CGCCGAACAG CGCATCGTCG CCCTCGTCAC CGAAGGCCTG CCGAACCGCG AGATCGCCGC GAACCTCTTC CTGTCCGTCA AGACCGTCGA AAGCGTGCTG ACCGGCGTTT ACCGAAAGCT CGGCGTCCGA TCGCGCACGC AGCTCGCCGT CCTCTTGCGC GATGATTAG
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Protein sequence | MIGHGELVAD LTARAADAVP TVLTAPPGRG KSALLDAVAE PWIAREDHVV WLTAAPTDRD VPFAALTDLL TEAPDLPEPW LAALKQALRR IPGTPDRVAI RLAARACLDA AIPPDKGVLL LADDLQWWDA DSLDVLAHLA RHGIPVVAAT RPGGPVDLLG RDAQEVPVPA LTAEQTATLL QERGIGFRIA ARVHTAAGGN ARLTVEIARG FDATSGALDA VTTPAAARRC IRGWIDELPT PDNVWRTLLI AAIAADPAIP TLRRTAGPAT LEALACAEQA GLITVDVHGT VTFPATAVRD TVLADASQET LRTAHLLLAE TTTDPTARLW HRATAARDRP DLEVASELAI AARAVRRRGD PGRAAELWLL AAEMMPARET MAETTDASNG SLAPLPAPVS GTADRTQHAD QQPVARDASA ARQHATHAQP SSGPTATTGS LSAPDASTTR HQAATAQPAD TPPQTADFPT RATRQPAATS QPISDPTPAT SFFTALDASD TRQPAASSAP AGRPSTTAAS TDQPPRPPAS RTTPRPTAVA ALLLAAATDA AAAGRPHLAR TAVARLDRTE SDHAARARAR LAVVDAAGQA VGGLDGILGR ALADAEAAAD PALLSAVHLR VAWHAHLALG DNRRAHDAAR AAVRAAELSQ DAESRAAALV MLARIEQLLG ESSYPRVLRR ALALSPEPPG ALLNSPRWLS VRFALFADQL DEARHHLSQL TSHAERSGSH ADRALLLRGA VEIDARAGHG AAAIRSARRL EELPGADRAS PGPVWFTAAL AQTAGGTLEE ALRLADRGTA ASAQEQDQIF LTRCLALSGG IRLLLRDTAA AADDLNRVRT LVAEQGIADP AAVRFHADLA EVLVSLGQPD EAAVIVTETR RAAEELRRRG VLASLDRADA VIKASQGDHA RAEALLHRAD HTFHTLGLPL ERGRVLLTRA IIDKRRRRAA SARRFHDQAT AIFQRAQAPL WEPAEVVTET PGPAHGPGQG PAPDLTAAEQ RIVALVTEGL PNREIAANLF LSVKTVESVL TGVYRKLGVR SRTQLAVLLR DD
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