Gene Caci_0135 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCaci_0135 
Symbol 
ID8331460 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameCatenulispora acidiphila DSM 44928 
KingdomBacteria 
Replicon accessionNC_013131 
Strand
Start bp140607 
End bp143765 
Gene Length3159 bp 
Protein Length1052 aa 
Translation table11 
GC content73% 
IMG OID644953302 
Producttranscriptional regulator, LuxR family 
Protein accessionYP_003110931 
Protein GI256389367 
COG category[K] Transcription
[T] Signal transduction mechanisms 
COG ID[COG2197] Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones13 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones36 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGATCGGGC ATGGGGAGCT CGTCGCCGAC CTCACCGCGC GCGCGGCCGA CGCCGTCCCC 
ACCGTCCTGA CGGCACCACC CGGCCGCGGC AAGTCCGCCC TCCTCGACGC CGTGGCAGAA
CCCTGGATCG CCCGCGAGGA CCACGTCGTC TGGCTGACCG CGGCTCCCAC CGACCGCGAC
GTCCCCTTCG CCGCCCTCAC CGACCTCCTC ACCGAGGCAC CCGACCTCCC CGAACCTTGG
CTCGCGGCCC TCAAGCAAGC CCTCCGCCGG ATACCCGGCA CCCCCGATCG CGTAGCGATC
CGCCTCGCCG CACGCGCATG CCTGGACGCG GCAATACCGC CCGACAAAGG CGTCCTGCTC
CTGGCCGACG ACCTCCAATG GTGGGACGCG GACAGCCTCG ACGTCCTGGC CCACCTCGCC
CGGCACGGCA TCCCGGTCGT CGCGGCAACC CGCCCCGGCG GCCCGGTGGA CTTATTGGGC
CGCGACGCCC AAGAAGTCCC AGTCCCCGCA CTGACCGCCG AACAGACCGC GACGCTGTTA
CAGGAACGCG GAATCGGCTT CCGCATCGCG GCACGCGTTC ACACCGCAGC CGGCGGAAAC
GCCCGGCTGA CCGTGGAAAT CGCCCGCGGC TTCGACGCCA CCTCCGGCGC ACTCGACGCG
GTCACGACAC CGGCGGCGGC ACGACGCTGC ATCCGAGGCT GGATCGACGA ACTGCCGACC
CCGGACAACG TCTGGCGCAC CCTGCTGATC GCCGCGATCG CCGCCGACCC CGCAATCCCC
ACCCTGCGGC GAACCGCGGG CCCAGCCACA CTCGAAGCCC TAGCCTGCGC CGAACAAGCC
GGACTGATCA CAGTCGACGT GCACGGCACA GTCACCTTCC CAGCCACAGC AGTCCGCGAC
ACAGTCCTCG CCGACGCATC CCAGGAAACC CTCCGCACAG CCCACCTCCT CCTCGCCGAA
ACCACCACGG ACCCCACCGC CCGCCTCTGG CACCGCGCCA CCGCCGCCCG CGACCGCCCA
GACCTGGAAG TCGCCTCCGA ACTGGCCATC GCCGCCCGAG CAGTACGCCG ACGAGGCGAC
CCAGGACGCG CGGCAGAGTT ATGGCTGCTC GCGGCGGAGA TGATGCCGGC ACGCGAAACC
ATGGCCGAAA CCACGGACGC CTCGAACGGC TCGCTCGCGC CGCTGCCGGC TCCGGTGAGC
GGGACAGCCG ACCGGACGCA GCACGCCGAT CAGCAGCCAG TCGCGCGCGA TGCCAGCGCC
GCGCGCCAGC ACGCCACACA CGCGCAGCCG AGTAGCGGCC CGACCGCCAC CACAGGTTCC
CTCAGCGCGC CCGATGCCAG CACAACTCGC CACCAAGCCG CGACCGCGCA GCCCGCCGAC
ACACCGCCAC AAACCGCAGA CTTCCCCACC AGAGCCACTC GCCAGCCAGC TGCGACCTCG
CAGCCGATCA GCGACCCGAC ACCGGCCACC AGCTTCTTCA CCGCTCTCGA TGCCAGCGAC
ACTCGCCAGC CAGCCGCGTC CTCCGCACCA GCCGGCAGAC CATCGACCAC CGCAGCCTCC
ACCGACCAAC CGCCCCGACC TCCTGCATCG CGCACCACCC CCCGCCCCAC CGCCGTTGCC
GCCCTCCTCC TCGCCGCCGC CACCGACGCG GCTGCTGCGG GCCGTCCGCA CCTGGCGCGT
ACCGCGGTGG CGCGGCTGGA TCGCACCGAG TCCGATCATG CGGCGCGGGC TCGGGCTCGG
TTGGCGGTGG TTGATGCGGC GGGGCAGGCG GTGGGGGGGT TGGATGGGAT TCTGGGGCGG
GCGTTGGCTG ATGCTGAGGC GGCGGCTGAT CCGGCTTTGC TCTCCGCCGT GCATCTGCGG
GTCGCGTGGC ATGCGCATCT CGCGCTCGGC GATAATCGGC GGGCGCATGA CGCCGCGCGG
GCTGCGGTGC GGGCTGCCGA GTTGTCGCAG GATGCTGAGT CGCGGGCTGC CGCGCTGGTC
ATGCTGGCGC GCATCGAGCA GTTGCTCGGC GAGTCCTCGT ATCCGCGTGT GCTGCGGCGG
GCGTTGGCGC TCAGTCCTGA GCCTCCTGGC GCGCTGCTGA ACTCCCCGCG CTGGCTGAGT
GTGCGCTTCG CGCTGTTCGC CGATCAGCTC GACGAAGCGC GCCACCATCT CAGCCAGCTC
ACCTCCCACG CCGAGCGCAG CGGCAGCCAC GCTGATCGCG CGCTCCTGCT GCGCGGCGCG
GTGGAGATCG ACGCACGCGC CGGCCACGGC GCCGCCGCCA TCCGCAGCGC ACGCCGCCTC
GAAGAACTCC CCGGCGCCGA CCGCGCCTCG CCCGGGCCCG TGTGGTTCAC CGCCGCGTTG
GCGCAGACGG CCGGCGGCAC GCTGGAGGAG GCGCTGCGCC TCGCCGATCG GGGGACCGCC
GCCTCGGCGC AGGAACAGGA CCAGATCTTC CTGACCCGCT GCCTCGCCCT GTCCGGCGGA
ATCCGGCTCC TCCTGCGCGA CACCGCAGCG GCCGCCGACG ACCTGAACCG TGTCAGGACC
CTGGTAGCGG AGCAGGGCAT CGCCGATCCG GCCGCCGTCC GCTTCCACGC CGACCTCGCC
GAGGTCCTGG TCTCGCTCGG CCAGCCCGAC GAGGCAGCCG TGATCGTCAC CGAGACCCGG
CGCGCCGCCG AGGAGCTCCG ACGCCGCGGC GTCCTGGCCT CGCTCGACCG AGCCGACGCC
GTCATCAAGG CCTCGCAAGG CGATCACGCC CGCGCCGAAG CCCTCCTGCA CCGCGCCGAC
CACACCTTCC ACACGCTCGG CCTCCCCCTG GAACGCGGCC GCGTCCTGCT CACCCGCGCG
ATCATCGACA AGCGCCGGCG CCGCGCGGCA TCCGCACGCC GCTTCCACGA CCAAGCCACA
GCGATCTTCC AGCGCGCGCA GGCGCCGCTC TGGGAACCGG CCGAAGTCGT CACCGAAACG
CCGGGACCGG CGCACGGCCC AGGGCAGGGA CCCGCGCCAG ACCTCACCGC CGCCGAACAG
CGCATCGTCG CCCTCGTCAC CGAAGGCCTG CCGAACCGCG AGATCGCCGC GAACCTCTTC
CTGTCCGTCA AGACCGTCGA AAGCGTGCTG ACCGGCGTTT ACCGAAAGCT CGGCGTCCGA
TCGCGCACGC AGCTCGCCGT CCTCTTGCGC GATGATTAG
 
Protein sequence
MIGHGELVAD LTARAADAVP TVLTAPPGRG KSALLDAVAE PWIAREDHVV WLTAAPTDRD 
VPFAALTDLL TEAPDLPEPW LAALKQALRR IPGTPDRVAI RLAARACLDA AIPPDKGVLL
LADDLQWWDA DSLDVLAHLA RHGIPVVAAT RPGGPVDLLG RDAQEVPVPA LTAEQTATLL
QERGIGFRIA ARVHTAAGGN ARLTVEIARG FDATSGALDA VTTPAAARRC IRGWIDELPT
PDNVWRTLLI AAIAADPAIP TLRRTAGPAT LEALACAEQA GLITVDVHGT VTFPATAVRD
TVLADASQET LRTAHLLLAE TTTDPTARLW HRATAARDRP DLEVASELAI AARAVRRRGD
PGRAAELWLL AAEMMPARET MAETTDASNG SLAPLPAPVS GTADRTQHAD QQPVARDASA
ARQHATHAQP SSGPTATTGS LSAPDASTTR HQAATAQPAD TPPQTADFPT RATRQPAATS
QPISDPTPAT SFFTALDASD TRQPAASSAP AGRPSTTAAS TDQPPRPPAS RTTPRPTAVA
ALLLAAATDA AAAGRPHLAR TAVARLDRTE SDHAARARAR LAVVDAAGQA VGGLDGILGR
ALADAEAAAD PALLSAVHLR VAWHAHLALG DNRRAHDAAR AAVRAAELSQ DAESRAAALV
MLARIEQLLG ESSYPRVLRR ALALSPEPPG ALLNSPRWLS VRFALFADQL DEARHHLSQL
TSHAERSGSH ADRALLLRGA VEIDARAGHG AAAIRSARRL EELPGADRAS PGPVWFTAAL
AQTAGGTLEE ALRLADRGTA ASAQEQDQIF LTRCLALSGG IRLLLRDTAA AADDLNRVRT
LVAEQGIADP AAVRFHADLA EVLVSLGQPD EAAVIVTETR RAAEELRRRG VLASLDRADA
VIKASQGDHA RAEALLHRAD HTFHTLGLPL ERGRVLLTRA IIDKRRRRAA SARRFHDQAT
AIFQRAQAPL WEPAEVVTET PGPAHGPGQG PAPDLTAAEQ RIVALVTEGL PNREIAANLF
LSVKTVESVL TGVYRKLGVR SRTQLAVLLR DD