More than 300 homologs were found in PanDaTox collection
for query gene Sked_35370 on replicon NC_013521
Organism: Sanguibacter keddieii DSM 10542



Page 1 of 3    << first  < prev  1  2  3    next >  last >>   


Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_013521  Sked_35370  response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain  100 
 
 
881 aa  1714    Sanguibacter keddieii DSM 10542  Bacteria  normal  0.705533  normal  0.60935 
 
 
-
 
NC_013530  Xcel_3197  transcriptional regulator, LuxR family  33.11 
 
 
876 aa  352  2e-95  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  n/a   
 
 
-
 
NC_013530  Xcel_2829  transcriptional regulator, LuxR family  34.26 
 
 
865 aa  314  5.999999999999999e-84  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  n/a   
 
 
-
 
NC_013530  Xcel_1823  transcriptional regulator, LuxR family  30.17 
 
 
846 aa  202  1.9999999999999998e-50  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  n/a   
 
 
-
 
NC_013521  Sked_34130  response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain  27.53 
 
 
853 aa  183  1e-44  Sanguibacter keddieii DSM 10542  Bacteria  normal  normal  0.208365 
 
 
-
 
NC_008541  Arth_1224  LuxR family transcriptional regulator  30.81 
 
 
894 aa  70.5  0.0000000001  Arthrobacter sp. FB24  Bacteria  normal  n/a   
 
 
-
 
NC_008541  Arth_1222  LuxR family transcriptional regulator  26.3 
 
 
926 aa  69.3  0.0000000003  Arthrobacter sp. FB24  Bacteria  normal  n/a   
 
 
-
 
NC_011886  Achl_1292  transcriptional regulator, LuxR family  28.46 
 
 
845 aa  68.6  0.0000000005  Arthrobacter chlorophenolicus A6  Bacteria  n/a    hitchhiker  0.00000000215082 
 
 
-
 
NC_008541  Arth_1221  LuxR family transcriptional regulator  50.91 
 
 
910 aa  65.9  0.000000004  Arthrobacter sp. FB24  Bacteria  normal  n/a   
 
 
-
 
NC_010086  Bmul_3818  LuxR family transcriptional regulator  48.48 
 
 
264 aa  65.9  0.000000004  Burkholderia multivorans ATCC 17616  Bacteria  normal  hitchhiker  0.0000221432 
 
 
-
 
NC_013757  Gobs_3139  transcriptional regulator, LuxR family  63.64 
 
 
879 aa  65.5  0.000000004  Geodermatophilus obscurus DSM 43160  Bacteria  hitchhiker  0.00942978  n/a   
 
 
-
 
NC_011886  Achl_3560  transcriptional regulator, LuxR family  27.27 
 
 
893 aa  64.3  0.000000008  Arthrobacter chlorophenolicus A6  Bacteria  n/a    normal 
 
 
-
 
NC_007511  Bcep18194_B0930  LuxR family transcriptional regulator  54.39 
 
 
246 aa  63.2  0.00000002  Burkholderia sp. 383  Bacteria  normal  0.6214  normal 
 
 
-
 
NC_013131  Caci_5781  transcriptional regulator, LuxR family  55.56 
 
 
895 aa  63.2  0.00000002  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal 
 
 
-
 
NC_008061  Bcen_3585  LuxR family transcriptional regulator  52.63 
 
 
251 aa  62.8  0.00000002  Burkholderia cenocepacia AU 1054  Bacteria  normal  0.976883  n/a   
 
 
-
 
NC_009921  Franean1_3551  cyclic nucleotide-binding protein  61.54 
 
 
1001 aa  63.2  0.00000002  Frankia sp. EAN1pec  Bacteria  normal  normal 
 
 
-
 
NC_008543  Bcen2424_4782  LuxR family transcriptional regulator  52.63 
 
 
251 aa  62.8  0.00000002  Burkholderia cenocepacia HI2424  Bacteria  normal  0.134366  normal 
 
 
-
 
NC_010552  BamMC406_4689  LuxR family transcriptional regulator  52.63 
 
 
243 aa  62.8  0.00000002  Burkholderia ambifaria MC40-6  Bacteria  normal  normal 
 
 
-
 
NC_013521  Sked_26510  transcriptional regulator, luxR family  58.18 
 
 
903 aa  63.5  0.00000002  Sanguibacter keddieii DSM 10542  Bacteria  normal  normal  0.427696 
 
 
-
 
NC_010515  Bcenmc03_5501  LuxR family transcriptional regulator  52.63 
 
 
242 aa  62.8  0.00000003  Burkholderia cenocepacia MC0-3  Bacteria  normal  normal  0.926313 
 
 
-
 
NC_008391  Bamb_4166  LuxR family transcriptional regulator  52.63 
 
 
243 aa  62.4  0.00000003  Burkholderia ambifaria AMMD  Bacteria  normal  normal 
 
 
-
 
NC_013093  Amir_1178  transcriptional regulator, LuxR family  55.36 
 
 
1104 aa  61.6  0.00000006  Actinosynnema mirum DSM 43827  Bacteria  decreased coverage  0.00127631  n/a   
 
 
-
 
NC_007650  BTH_II1538  LuxR family transcriptional regulator  52.63 
 
 
288 aa  61.6  0.00000007  Burkholderia thailandensis E264  Bacteria  normal  n/a   
 
 
-
 
NC_006349  BMAA1366  LuxR family transcriptional regulator  52.63 
 
 
235 aa  61.2  0.00000008  Burkholderia mallei ATCC 23344  Bacteria  normal  n/a   
 
 
-
 
NC_013510  Tcur_1998  transcriptional regulator, LuxR family  53.57 
 
 
956 aa  61.2  0.00000008  Thermomonospora curvata DSM 43183  Bacteria  normal  0.0120259  n/a   
 
 
-
 
NC_009078  BURPS1106A_A1199  LuxR family transcriptional regulator  52.63 
 
 
235 aa  61.2  0.00000008  Burkholderia pseudomallei 1106a  Bacteria  normal  0.791762  n/a   
 
 
-
 
NC_009079  BMA10247_A0942  LuxR family transcriptional regulator  52.63 
 
 
235 aa  61.2  0.00000008  Burkholderia mallei NCTC 10247  Bacteria  normal  0.232709  n/a   
 
 
-
 
NC_008784  BMASAVP1_0350  LuxR family transcriptional regulator  52.63 
 
 
259 aa  61.2  0.00000009  Burkholderia mallei SAVP1  Bacteria  normal  n/a   
 
 
-
 
NC_007435  BURPS1710b_A2465  LuxR family transcriptional regulator  52.63 
 
 
273 aa  60.8  0.0000001  Burkholderia pseudomallei 1710b  Bacteria  normal  0.54611  n/a   
 
 
-
 
NC_008835  BMA10229_0630  LuxR family transcriptional regulator  52.63 
 
 
273 aa  60.8  0.0000001  Burkholderia mallei NCTC 10229  Bacteria  normal  0.0768185  n/a   
 
 
-
 
NC_009075  BURPS668_A1273  LuxR family transcriptional regulator  52.63 
 
 
273 aa  60.8  0.0000001  Burkholderia pseudomallei 668  Bacteria  normal  0.0925384  n/a   
 
 
-
 
NC_009077  Mjls_0920  response regulator receiver protein  52.73 
 
 
880 aa  60.5  0.0000001  Mycobacterium sp. JLS  Bacteria  normal  0.563129  normal  0.106306 
 
 
-
 
NC_008726  Mvan_0244  response regulator receiver protein  49.23 
 
 
868 aa  60.5  0.0000002  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  normal  0.140274 
 
 
-
 
NC_013739  Cwoe_0388  transcriptional regulator, LuxR family  56.6 
 
 
916 aa  60.1  0.0000002  Conexibacter woesei DSM 14684  Bacteria  normal  normal  0.0286476 
 
 
-
 
NC_013739  Cwoe_4976  two component transcriptional regulator, LuxR family  56.6 
 
 
218 aa  60.1  0.0000002  Conexibacter woesei DSM 14684  Bacteria  normal  0.289575  normal  0.034027 
 
 
-
 
NC_009483  Gura_3333  putative GAF sensor protein  44.62 
 
 
337 aa  59.7  0.0000002  Geobacter uraniireducens Rf4  Bacteria  decreased coverage  0.00000024047  n/a   
 
 
-
 
NC_009664  Krad_2291  regulatory protein LuxR  48.28 
 
 
934 aa  59.3  0.0000003  Kineococcus radiotolerans SRS30216  Bacteria  normal  normal 
 
 
-
 
NC_013093  Amir_2245  transcriptional regulator, LuxR family  53.57 
 
 
956 aa  59.3  0.0000003  Actinosynnema mirum DSM 43827  Bacteria  unclonable  0.00000425814  n/a   
 
 
-
 
NC_013595  Sros_3785  ATPase-like protein  55.77 
 
 
937 aa  59.3  0.0000003  Streptosporangium roseum DSM 43021  Bacteria  normal  0.114558  normal 
 
 
-
 
NC_013595  Sros_3795  ATPase-like protein  36.22 
 
 
925 aa  59.3  0.0000003  Streptosporangium roseum DSM 43021  Bacteria  normal  0.978971  normal 
 
 
-
 
NC_009664  Krad_2286  regulatory protein LuxR  36.29 
 
 
961 aa  58.9  0.0000004  Kineococcus radiotolerans SRS30216  Bacteria  normal  normal 
 
 
-
 
NC_010320  Teth514_2042  two component LuxR family transcriptional regulator  39.39 
 
 
208 aa  58.2  0.0000007  Thermoanaerobacter sp. X514  Bacteria  normal  n/a   
 
 
-
 
NC_013739  Cwoe_2417  transcriptional regulator, LuxR family  34.23 
 
 
998 aa  58.2  0.0000007  Conexibacter woesei DSM 14684  Bacteria  normal  0.0109186  decreased coverage  0.00199562 
 
 
-
 
NC_009338  Mflv_1156  regulatory protein, LuxR  43.64 
 
 
900 aa  58.2  0.0000007  Mycobacterium gilvum PYR-GCK  Bacteria  normal  normal  0.0131958 
 
 
-
 
NC_013757  Gobs_1300  transcriptional regulator, LuxR family  39.25 
 
 
910 aa  58.2  0.0000008  Geodermatophilus obscurus DSM 43160  Bacteria  normal  0.632041  n/a   
 
 
-
 
NC_012669  Bcav_1247  transcriptional regulator, LuxR family  43.16 
 
 
871 aa  57.8  0.0000009  Beutenbergia cavernae DSM 12333  Bacteria  normal  normal 
 
 
-
 
NC_013521  Sked_02220  response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain  36.44 
 
 
862 aa  57.8  0.0000009  Sanguibacter keddieii DSM 10542  Bacteria  normal  0.591408  normal 
 
 
-
 
NC_009953  Sare_4559  LuxR family transcriptional regulator  49.18 
 
 
877 aa  57.8  0.0000009  Salinispora arenicola CNS-205  Bacteria  normal  normal  0.0332938 
 
 
-
 
NC_009338  Mflv_4479  regulatory protein, LuxR  56.6 
 
 
865 aa  57.8  0.0000009  Mycobacterium gilvum PYR-GCK  Bacteria  normal  decreased coverage  0.00441631 
 
 
-
 
NC_013131  Caci_3613  transcriptional regulator, LuxR family  35 
 
 
884 aa  57.4  0.000001  Catenulispora acidiphila DSM 44928  Bacteria  decreased coverage  0.00449283  normal 
 
 
-
 
NC_013235  Namu_0956  transcriptional regulator, LuxR family  54.39 
 
 
344 aa  57.4  0.000001  Nakamurella multipartita DSM 44233  Bacteria  normal  0.886587  normal 
 
 
-
 
NC_013521  Sked_17030  response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain  34.97 
 
 
907 aa  57.4  0.000001  Sanguibacter keddieii DSM 10542  Bacteria  normal  0.758711  normal 
 
 
-
 
NC_010718  Nther_0648  two component transcriptional regulator, LuxR family  44.64 
 
 
215 aa  57.8  0.000001  Natranaerobius thermophilus JW/NM-WN-LF  Bacteria  normal  normal 
 
 
-
 
NC_009664  Krad_2325  regulatory protein LuxR  45.45 
 
 
923 aa  57  0.000001  Kineococcus radiotolerans SRS30216  Bacteria  normal  normal 
 
 
-
 
NC_008146  Mmcs_0908  LuxR family transcriptional regulator  58.33 
 
 
526 aa  57  0.000002  Mycobacterium sp. MCS  Bacteria  normal  n/a   
 
 
-
 
NC_013204  Elen_1743  two component transcriptional regulator, LuxR family  44.23 
 
 
214 aa  57  0.000002  Eggerthella lenta DSM 2243  Bacteria  normal  0.370009  normal  0.039988 
 
 
-
 
NC_008705  Mkms_0925  metal dependent phosphohydrolase  58.33 
 
 
526 aa  57  0.000002  Mycobacterium sp. KMS  Bacteria  normal  normal 
 
 
-
 
NC_008726  Mvan_4065  response regulator receiver protein  54.9 
 
 
864 aa  56.2  0.000002  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  0.206312  normal  0.538479 
 
 
-
 
NC_013739  Cwoe_2610  transcriptional regulator, LuxR family  50.91 
 
 
981 aa  57  0.000002  Conexibacter woesei DSM 14684  Bacteria  normal  0.701031  normal 
 
 
-
 
NC_009077  Mjls_0915  metal dependent phosphohydrolase  58.33 
 
 
526 aa  57  0.000002  Mycobacterium sp. JLS  Bacteria  normal  0.691229  decreased coverage  0.00674138 
 
 
-
 
NC_009921  Franean1_4833  LuxR family transcriptional regulator  48.57 
 
 
994 aa  56.6  0.000002  Frankia sp. EAN1pec  Bacteria  normal  normal  0.010143 
 
 
-
 
NC_013159  Svir_39510  response regulator containing a CheY-like receiver domain protein and an HTH DNA-binding domain protein  53.85 
 
 
216 aa  56.2  0.000003  Saccharomonospora viridis DSM 43017  Bacteria  normal  normal  0.657091 
 
 
-
 
NC_013510  Tcur_4334  transcriptional regulator, LuxR family  52.73 
 
 
160 aa  56.2  0.000003  Thermomonospora curvata DSM 43183  Bacteria  normal  n/a   
 
 
-
 
NC_011886  Achl_3086  transcriptional regulator, LuxR family  47.17 
 
 
695 aa  55.8  0.000003  Arthrobacter chlorophenolicus A6  Bacteria  n/a    normal 
 
 
-
 
NC_014210  Ndas_4595  transcriptional regulator, LuxR family  45.28 
 
 
995 aa  55.8  0.000003  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  0.131343  normal 
 
 
-
 
NC_013441  Gbro_0068  regulatory protein LuxR  42.86 
 
 
867 aa  56.2  0.000003  Gordonia bronchialis DSM 43247  Bacteria  normal  0.289946  n/a   
 
 
-
 
NC_009664  Krad_2323  regulatory protein LuxR  48.21 
 
 
955 aa  56.2  0.000003  Kineococcus radiotolerans SRS30216  Bacteria  normal  normal 
 
 
-
 
NC_013173  Dbac_2905  transcriptional regulator, LuxR family  46 
 
 
335 aa  56.2  0.000003  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  n/a   
 
 
-
 
NC_012791  Vapar_4439  two component transcriptional regulator, LuxR family  50 
 
 
224 aa  56.2  0.000003  Variovorax paradoxus S110  Bacteria  normal  n/a   
 
 
-
 
NC_013757  Gobs_0156  two component transcriptional regulator, LuxR family  48.21 
 
 
230 aa  55.5  0.000004  Geodermatophilus obscurus DSM 43160  Bacteria  normal  0.379873  n/a   
 
 
-
 
NC_013170  Ccur_06630  response regulator containing a CheY-like receiver domain protein and an HTH DNA-binding domain protein  48.08 
 
 
215 aa  55.5  0.000004  Cryptobacterium curtum DSM 15641  Bacteria  normal  0.252447  normal  0.303532 
 
 
-
 
NC_012793  GWCH70_0367  transcriptional regulator, LuxR family  47.17 
 
 
556 aa  55.5  0.000004  Geobacillus sp. WCH70  Bacteria  normal  n/a   
 
 
-
 
NC_013530  Xcel_0094  two component transcriptional regulator, LuxR family  47.46 
 
 
220 aa  55.1  0.000005  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  n/a   
 
 
-
 
NC_008146  Mmcs_4923  LuxR family transcriptional regulator  44.26 
 
 
937 aa  55.5  0.000005  Mycobacterium sp. MCS  Bacteria  normal  0.360996  n/a   
 
 
-
 
NC_013739  Cwoe_5220  transcriptional regulator, LuxR family  48.21 
 
 
960 aa  55.1  0.000005  Conexibacter woesei DSM 14684  Bacteria  normal  normal 
 
 
-
 
NC_013947  Snas_5019  transcriptional regulator, LuxR family  45.21 
 
 
916 aa  55.1  0.000005  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  normal  0.385321 
 
 
-
 
NC_008705  Mkms_5012  regulatory protein, LuxR  44.26 
 
 
937 aa  55.5  0.000005  Mycobacterium sp. KMS  Bacteria  normal  normal  0.981168 
 
 
-
 
NC_009077  Mjls_5305  regulatory protein, LuxR  44.26 
 
 
937 aa  55.1  0.000005  Mycobacterium sp. JLS  Bacteria  normal  normal 
 
 
-
 
NC_009439  Pmen_2538  regulatory protein, LuxR  44.64 
 
 
907 aa  55.1  0.000005  Pseudomonas mendocina ymp  Bacteria  normal  0.896851  normal  0.0163895 
 
 
-
 
NC_013204  Elen_1903  transcriptional regulator, LuxR family  50 
 
 
196 aa  55.1  0.000006  Eggerthella lenta DSM 2243  Bacteria  normal  hitchhiker  0.000000231921 
 
 
-
 
NC_009338  Mflv_4474  regulatory protein, LuxR  50.98 
 
 
977 aa  55.1  0.000006  Mycobacterium gilvum PYR-GCK  Bacteria  normal  decreased coverage  0.0017385 
 
 
-
 
NC_008697  Noca_4918  metal-dependent phosphohydrolase  52.08 
 
 
516 aa  54.7  0.000007  Nocardioides sp. JS614  Bacteria  normal  0.401687  normal 
 
 
-
 
NC_013174  Jden_2514  two component transcriptional regulator, LuxR family  50 
 
 
230 aa  54.7  0.000007  Jonesia denitrificans DSM 20603  Bacteria  normal  0.135771  normal  0.887193 
 
 
-
 
NC_013411  GYMC61_1243  transcriptional regulator, LuxR family  45.28 
 
 
550 aa  54.7  0.000008  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_013235  Namu_0324  transcriptional regulator, LuxR family  53.7 
 
 
938 aa  54.7  0.000008  Nakamurella multipartita DSM 44233  Bacteria  normal  normal 
 
 
-
 
NC_011886  Achl_1291  transcriptional regulator, LuxR family  49.02 
 
 
912 aa  54.7  0.000008  Arthrobacter chlorophenolicus A6  Bacteria  n/a    hitchhiker  0.000000000111184 
 
 
-
 
NC_008578  Acel_1390  two component LuxR family transcriptional regulator  50 
 
 
225 aa  54.7  0.000008  Acidothermus cellulolyticus 11B  Bacteria  normal  normal 
 
 
-
 
NC_014165  Tbis_0649  LuxR family two component transcriptional regulator  46.15 
 
 
212 aa  54.7  0.000008  Thermobispora bispora DSM 43833  Bacteria  normal  0.93281  normal  0.368826 
 
 
-
 
NC_011831  Cagg_1769  two component transcriptional regulator, LuxR family  50 
 
 
219 aa  54.7  0.000008  Chloroflexus aggregans DSM 9485  Bacteria  normal  0.221401  normal  0.0578747 
 
 
-
 
NC_011830  Dhaf_1230  two component transcriptional regulator, LuxR family  42.19 
 
 
215 aa  54.7  0.000008  Desulfitobacterium hafniense DCB-2  Bacteria  normal  n/a   
 
 
-
 
NC_010816  BLD_1769  putative response regulator  44.23 
 
 
231 aa  54.3  0.000009  Bifidobacterium longum DJO10A  Bacteria  normal  n/a   
 
 
-
 
NC_013595  Sros_1229  response regulator receiver protein  46.15 
 
 
212 aa  54.7  0.000009  Streptosporangium roseum DSM 43021  Bacteria  normal  0.643884  hitchhiker  0.00799583 
 
 
-
 
NC_013739  Cwoe_4558  transcriptional regulator, LuxR family  42.11 
 
 
952 aa  54.3  0.000009  Conexibacter woesei DSM 14684  Bacteria  normal  0.025168  normal 
 
 
-
 
NC_013510  Tcur_3614  two component transcriptional regulator, LuxR family  56.25 
 
 
201 aa  54.3  0.000009  Thermomonospora curvata DSM 43183  Bacteria  normal  0.765091  n/a   
 
 
-
 
NC_013510  Tcur_4226  two component transcriptional regulator, LuxR family  46.15 
 
 
210 aa  54.7  0.000009  Thermomonospora curvata DSM 43183  Bacteria  normal  n/a   
 
 
-
 
NC_007513  Syncc9902_0287  LuxR family transcriptional regulator  52.08 
 
 
92 aa  53.9  0.00001  Synechococcus sp. CC9902  Bacteria  normal  n/a   
 
 
-
 
NC_007778  RPB_1250  two component LuxR family transcriptional regulator  42.5 
 
 
309 aa  53.9  0.00001  Rhodopseudomonas palustris HaA2  Bacteria  normal  0.886948  normal 
 
 
-
 
NC_013131  Caci_1095  transcriptional regulator, LuxR family  53.7 
 
 
919 aa  53.9  0.00001  Catenulispora acidiphila DSM 44928  Bacteria  normal  0.860504  normal 
 
 
-
 
NC_010506  Swoo_4031  ATP-dependent transcription regulator LuxR  47.27 
 
 
896 aa  53.9  0.00001  Shewanella woodyi ATCC 51908  Bacteria  normal  0.924331  normal  0.36139 
 
 
-
 
NC_009654  Mmwyl1_0962  response regulator receiver protein  43.75 
 
 
304 aa  53.9  0.00001  Marinomonas sp. MWYL1  Bacteria  normal  0.512477  normal 
 
 
-
 
Page 1 of 3    << first  < prev  1  2  3    next >  last >>