Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Caci_4197 |
Symbol | |
ID | 8335551 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Catenulispora acidiphila DSM 44928 |
Kingdom | Bacteria |
Replicon accession | NC_013131 |
Strand | - |
Start bp | 4751681 |
End bp | 4754677 |
Gene Length | 2997 bp |
Protein Length | 998 aa |
Translation table | 11 |
GC content | 71% |
IMG OID | 644957300 |
Product | transcriptional regulator, LuxR family |
Protein accession | YP_003114902 |
Protein GI | 256393338 |
COG category | [K] Transcription [R] General function prediction only [T] Signal transduction mechanisms |
COG ID | [COG2197] Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [COG3899] Predicted ATPase |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 11 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 29 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGTCCCGAC CTCAGGATCA CGACCTCGGC TCACCGCATC TCGTCGTCGG CCGCGACGAG GAGATGCGGG CCGTCGCCGC CGCCTTCGAC GCCTTGACCG CCGGCACCGG CGGGTTCTTG CAGGTGGTCG GCGAGCCGGG CATCGGCAAG ACGTACCTGC TGGCCGCGAT CCGGGAGACG GCGCTGACCA AGGGCATCTC AGTGCTCTCC GGCAGGGCGA CGGAGTTCGA GCAGGAGATG CCCTTCCAGA TCCTGCTGGA CGCGCTGTCC GAGCACGGGG ATCTGGCGCG CCTGCTGGAA GGGCTGCCGC CGGGCGCCGG CGAAGTGCCG GCGCCGGACC GGCCGCCCGG GGCCCGGTCG GCGCCGGACA TCGACCGCTT CCGGCTCTTC CAGGCGCTGC GGCAGGTGAT GGCGTCGATG GCGGATCAGC CGGTCCTGGT GCTGCTGGAC GACGTGCACT GGGCCGATCC GGGCTCGATC GACTTCATCG CCTTCCTCAG CCGCCGCCCG ATCGCCGGAC CGGTGCTCAT CGTCGTGGCG CACCGCGAAC GCCAGGCGCC GGCACAACTT CGCTACGCGC TAGCCCGCGA CACCGATCAC GGCACGGTCA CCCGGATCGA GCTCGGTCCG CTGTCGCTGG CCGATTCCGC GCGGCTGCTC GGCGACCGGA ACGGAACGCG CCGCAGCGTC GAGTTGCACG AGAAGAGCCA CGGCAATCCC CTGTACCTGC TGACGCTGGA CCGCAGCAAC GGCTACCGGC GGCGTCCGGG AGACCCGAAC CGGCGCGAGG GTGGCGACGC CTCCAGCCGG CTGGAAGCGC TTATCCTCGG GGAGACCGTG ACCCTGTCTC CGGACGAGTT GGCCGTCGCC TCGACCGCAG CGGTCGTGGG AGACCCGTTC ACCCCCGAAC TGCTGACCGC GGTCATGGCC GGCCCGGCTT TGAGCCAGGT GGAGTGCGCG GTGAACAGCC TGGTCAGCCG GGATCTGATT CGCGAGGTCC CCTCCGGTCC CGGGCTGGTC TTCCGGCATC CGCTGGTGCG CCGCGTCATC TACGACCAGT CGGCGCCGAC GTGGCGCGTG GACATCCATC GCAGAGCCCT GGCACTGCTC GCCGAGCGCG GGGCGTCTGC CTCCGAGCGG GTCCACCACG TCGAGCACTG CGCCACCGCC TGGTCGCCGG AGTACGAAAC AGTGCTCTGC CAGGCCGGCC AAGAGGCGAT GAGCACCTCT CCGCTGACGG CGGCGCACTG GTTCGGCGTC GCGCTGAACC TGTTGCCGCA CAACGAGGAT TCGCTGCGGC GCCGCTTCGA ACTCAGCTTC CTGGTAGCGC GCGCCTTAGG ACTCGGCGGC AGGTTCGCCG AGAGCCGGGA CCTGCTGCAC GAGATCCTTC AGGACGCCTC CGAGGCGACG ATGGTCAACC GCTCCGAGGC GGTGGTCCTG TGCGCGCACG CCGAGCAGCG CCTGGGCCGC TACTCCGAGG CGATCGCGCT GCTGCGTGCC GAGGTGGCGC GTCTGGGGAC GAAGACGTCC TCCCAGCGCA TCGGCCTGTG TCTGGAACTG GGCCTGACAG CTTTGCTGGC CAACGATTAT CCGGCGGCGC GTGCCGACAT CTCCTGGGCT CTGGACGCCG CGCGCGAGAC CGGCGACCGG CTGTATGAGG CGACCGCGCT GGCGTTCAGC GCGTTCGGCG AGATCTGCGT CGGGCACACC GACATCGCTC GGGCGGCGGC GGATTCGGCG AGCGCGATGG TGGACGGCAT GCCTGACAGC GTGCTGGCCG GGGAGCGGGA GACGCTGTGC ATGCTCGGCT GGGCCGAGAT GCTGCTGGAG CGGTTCTCCG ACGCCGATCG GCATCTGGCG CGCGGTCGGG CGATCGTGCG GCGGACCGGG CAGAGCCACG GCTTGCCGCA CGTGCTGCTC GGGCAGTGCC TGGTGGCGAT GTTCACCGGA CGCATGGCCG AGGCGCTGGA GCAGGTCCAG AACGCCGAGG ACGCCGCGCG CCTGGTCGGC AGCGACCACC TGCTGGGCAT CGTGCTGGCG ATCAAGGCGC CGATCCAGGT GTGGATGTCG CCGCGCGGCA AGGGAGACGC GGCGCTGGCC GGGGCGCGCG CGGCGACCGC GTTGTTCACC GGGAGCGCCG TGAACAGCTG GTGGGCACGC AATGCTCTGA TGCTGCGCGG ACATGCCGAA CTCACCAACG GTGACGCGGC GAGCTGCGTG GAGCTGGTGT TGCGCGCAGG CGGTCCGGAC TTACGCATGC TGGGCGCGCC TCTGGTCCCG GAGTATGCCG AGATCTTGAT CAGTGCCCTG ATCCGGCTGG GGCAGACCGA TCGCGCCGAG GAACTGGCGC GGATGGCGGT TGTGCAGGCC GAGCAGCTGG ATCTGCCCGG TCAGCGCGGG CACGCGGTCC GTGCCCGGGG TCTGCTCTCG GCGCTGCGCG GCGATCACCA GTCCGCGGAC GCCGACTTCA CGCGTGCCGT CGCGGCGTTC GCGCAGGCTG GTCGGCTCGT GGAGCAGGCG CGGACCGCGG TGTTCCATGC CCGCACGCTG GTCATGCTGG GTCGGCGCGA GGAGGCGCTG GCGACGCTGG CCCGCTCGAC GGCGCAGGCT GCGGGCTGCG GCGCGATCTG GGTGCGCGAC GAGTTGGAGC GGGTACGCGG GCAGGTCGCA GGGCGCGCGC CGGGTGGATG CGTGCAGTCG GCGGAGGAAA CGGCGGCCGC GGTGAACGAC GCCCCGACGA ATGCGGTCGG CGAGAGCACG TCCGCCGCTT CGCGATCGGG TACTCATGAC AGCGCCAGGG TGTTGACCGT GCTGACCGAC CGCGAACGCC AGATAGCGCT GCTCGTCGGC GCCGGGCACA GCAACCGCCA GATCGCGACG CGGCTGTTCC TGAGCGAGCG GACCGTCGAG AGCCACATGG GCAACGTCTA CCGGAAGCTG GGTGTGGCTT CGCGCGTCGC GCTGGCGCGG CTGCTGGCGT TCGAGGTCGA GGAGTAG
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Protein sequence | MSRPQDHDLG SPHLVVGRDE EMRAVAAAFD ALTAGTGGFL QVVGEPGIGK TYLLAAIRET ALTKGISVLS GRATEFEQEM PFQILLDALS EHGDLARLLE GLPPGAGEVP APDRPPGARS APDIDRFRLF QALRQVMASM ADQPVLVLLD DVHWADPGSI DFIAFLSRRP IAGPVLIVVA HRERQAPAQL RYALARDTDH GTVTRIELGP LSLADSARLL GDRNGTRRSV ELHEKSHGNP LYLLTLDRSN GYRRRPGDPN RREGGDASSR LEALILGETV TLSPDELAVA STAAVVGDPF TPELLTAVMA GPALSQVECA VNSLVSRDLI REVPSGPGLV FRHPLVRRVI YDQSAPTWRV DIHRRALALL AERGASASER VHHVEHCATA WSPEYETVLC QAGQEAMSTS PLTAAHWFGV ALNLLPHNED SLRRRFELSF LVARALGLGG RFAESRDLLH EILQDASEAT MVNRSEAVVL CAHAEQRLGR YSEAIALLRA EVARLGTKTS SQRIGLCLEL GLTALLANDY PAARADISWA LDAARETGDR LYEATALAFS AFGEICVGHT DIARAAADSA SAMVDGMPDS VLAGERETLC MLGWAEMLLE RFSDADRHLA RGRAIVRRTG QSHGLPHVLL GQCLVAMFTG RMAEALEQVQ NAEDAARLVG SDHLLGIVLA IKAPIQVWMS PRGKGDAALA GARAATALFT GSAVNSWWAR NALMLRGHAE LTNGDAASCV ELVLRAGGPD LRMLGAPLVP EYAEILISAL IRLGQTDRAE ELARMAVVQA EQLDLPGQRG HAVRARGLLS ALRGDHQSAD ADFTRAVAAF AQAGRLVEQA RTAVFHARTL VMLGRREEAL ATLARSTAQA AGCGAIWVRD ELERVRGQVA GRAPGGCVQS AEETAAAVND APTNAVGEST SAASRSGTHD SARVLTVLTD RERQIALLVG AGHSNRQIAT RLFLSERTVE SHMGNVYRKL GVASRVALAR LLAFEVEE
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