More than 300 homologs were found in PanDaTox collection
for query gene Sked_26900 on replicon NC_013521
Organism: Sanguibacter keddieii DSM 10542



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_013521  Sked_26900  response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain  100 
 
 
247 aa  482  1e-135  Sanguibacter keddieii DSM 10542  Bacteria  hitchhiker  0.00793239  normal  0.935402 
 
 
-
 
NC_014210  Ndas_1125  two component transcriptional regulator, LuxR family  57.68 
 
 
229 aa  257  1e-67  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  normal  0.306134 
 
 
-
 
NC_012669  Bcav_2689  two component transcriptional regulator, LuxR family  55.69 
 
 
223 aa  226  2e-58  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.364406  normal  0.346923 
 
 
-
 
NC_007333  Tfu_2233  LuxR response regulator receiver  49.79 
 
 
228 aa  217  1e-55  Thermobifida fusca YX  Bacteria  normal  n/a   
 
 
-
 
NC_013947  Snas_5068  two component transcriptional regulator, LuxR family  53.91 
 
 
220 aa  214  7e-55  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.708369  normal 
 
 
-
 
NC_013595  Sros_8799  response regulator receiver protein  51.68 
 
 
227 aa  212  3.9999999999999995e-54  Streptosporangium roseum DSM 43021  Bacteria  normal  0.755207  normal 
 
 
-
 
NC_014210  Ndas_4417  two component transcriptional regulator, LuxR family  48.35 
 
 
232 aa  207  2e-52  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  normal 
 
 
-
 
NC_009664  Krad_4263  two component transcriptional regulator, LuxR family  45.83 
 
 
230 aa  206  3e-52  Kineococcus radiotolerans SRS30216  Bacteria  normal  normal  0.455968 
 
 
-
 
NC_013739  Cwoe_5656  two component transcriptional regulator, LuxR family  50.21 
 
 
222 aa  204  1e-51  Conexibacter woesei DSM 14684  Bacteria  normal  normal 
 
 
-
 
NC_014210  Ndas_2024  two component transcriptional regulator, LuxR family  50.83 
 
 
220 aa  201  6e-51  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  0.876474  normal 
 
 
-
 
NC_013441  Gbro_2730  response regulator receiver  46.67 
 
 
216 aa  196  4.0000000000000005e-49  Gordonia bronchialis DSM 43247  Bacteria  normal  0.776601  n/a   
 
 
-
 
NC_013530  Xcel_0759  two component transcriptional regulator, LuxR family  50.21 
 
 
221 aa  194  1e-48  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  0.174089  n/a   
 
 
-
 
NC_013595  Sros_4219  response regulator receiver protein  48.57 
 
 
217 aa  189  4e-47  Streptosporangium roseum DSM 43021  Bacteria  hitchhiker  0.0092025  hitchhiker  0.000784643 
 
 
-
 
NC_013510  Tcur_2469  two component transcriptional regulator, LuxR family  45.75 
 
 
229 aa  188  5.999999999999999e-47  Thermomonospora curvata DSM 43183  Bacteria  hitchhiker  0.000889267  n/a   
 
 
-
 
NC_013093  Amir_4051  two component transcriptional regulator, LuxR family  45.83 
 
 
225 aa  188  5.999999999999999e-47  Actinosynnema mirum DSM 43827  Bacteria  decreased coverage  0.00308286  n/a   
 
 
-
 
NC_009380  Strop_0395  two component LuxR family transcriptional regulator  47.52 
 
 
217 aa  188  9e-47  Salinispora tropica CNB-440  Bacteria  normal  normal 
 
 
-
 
NC_009921  Franean1_2268  two component LuxR family transcriptional regulator  49.01 
 
 
250 aa  187  1e-46  Frankia sp. EAN1pec  Bacteria  hitchhiker  0.00478344  normal  0.0390494 
 
 
-
 
NC_013757  Gobs_1986  two component transcriptional regulator, LuxR family  46.06 
 
 
226 aa  185  4e-46  Geodermatophilus obscurus DSM 43160  Bacteria  normal  n/a   
 
 
-
 
NC_008699  Noca_1318  response regulator receiver  46.22 
 
 
225 aa  185  7e-46  Nocardioides sp. JS614  Bacteria  normal  n/a   
 
 
-
 
NC_013131  Caci_2656  two component transcriptional regulator, LuxR family  45.64 
 
 
226 aa  184  9e-46  Catenulispora acidiphila DSM 44928  Bacteria  normal  0.161573  normal 
 
 
-
 
NC_013131  Caci_7658  two component transcriptional regulator, LuxR family  44.21 
 
 
219 aa  183  3e-45  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal 
 
 
-
 
NC_013521  Sked_03540  response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain  45.49 
 
 
226 aa  180  2e-44  Sanguibacter keddieii DSM 10542  Bacteria  normal  normal 
 
 
-
 
NC_007333  Tfu_1845  LuxR response regulator receiver  44.53 
 
 
215 aa  180  2e-44  Thermobifida fusca YX  Bacteria  hitchhiker  0.00433344  n/a   
 
 
-
 
NC_013595  Sros_5905  response regulator receiver protein  43.8 
 
 
227 aa  180  2e-44  Streptosporangium roseum DSM 43021  Bacteria  normal  0.0252894  normal  0.145246 
 
 
-
 
NC_013947  Snas_1883  two component transcriptional regulator, LuxR family  47.54 
 
 
215 aa  179  4e-44  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  normal  0.0780809 
 
 
-
 
NC_014151  Cfla_0822  two component transcriptional regulator, LuxR family  43.98 
 
 
229 aa  178  9e-44  Cellulomonas flavigena DSM 20109  Bacteria  normal  normal 
 
 
-
 
NC_013530  Xcel_1633  two component transcriptional regulator, LuxR family  46.67 
 
 
241 aa  177  1e-43  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  0.457155  n/a   
 
 
-
 
NC_009664  Krad_1198  two component transcriptional regulator, LuxR family  42.92 
 
 
225 aa  177  1e-43  Kineococcus radiotolerans SRS30216  Bacteria  normal  0.109916  normal  0.0247339 
 
 
-
 
NC_014210  Ndas_2780  two component transcriptional regulator, LuxR family  45.45 
 
 
219 aa  177  2e-43  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  0.855193  normal  0.402473 
 
 
-
 
NC_013172  Bfae_25060  response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain  40.91 
 
 
222 aa  176  2e-43  Brachybacterium faecium DSM 4810  Bacteria  normal  0.444591  n/a   
 
 
-
 
NC_012669  Bcav_0236  two component transcriptional regulator, LuxR family  42.86 
 
 
224 aa  176  4e-43  Beutenbergia cavernae DSM 12333  Bacteria  normal  normal 
 
 
-
 
NC_010816  BLD_0671  putative response regulator  39.52 
 
 
248 aa  175  6e-43  Bifidobacterium longum DJO10A  Bacteria  normal  0.248332  n/a   
 
 
-
 
NC_009953  Sare_1603  two component LuxR family transcriptional regulator  45.64 
 
 
245 aa  174  8e-43  Salinispora arenicola CNS-205  Bacteria  normal  normal  0.0252513 
 
 
-
 
NC_013093  Amir_3314  two component transcriptional regulator, LuxR family  43.5 
 
 
222 aa  174  9e-43  Actinosynnema mirum DSM 43827  Bacteria  hitchhiker  0.00833126  n/a   
 
 
-
 
NC_013595  Sros_4672  response regulator receiver protein  42.8 
 
 
212 aa  174  9.999999999999999e-43  Streptosporangium roseum DSM 43021  Bacteria  normal  0.223352  normal  0.339353 
 
 
-
 
NC_013595  Sros_7211  response regulator receiver protein  44.44 
 
 
215 aa  174  9.999999999999999e-43  Streptosporangium roseum DSM 43021  Bacteria  normal  normal  0.0769384 
 
 
-
 
NC_014210  Ndas_4857  two component transcriptional regulator, LuxR family  42.98 
 
 
234 aa  174  1.9999999999999998e-42  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  normal  0.243741 
 
 
-
 
NC_013739  Cwoe_3988  two component transcriptional regulator, LuxR family  41.91 
 
 
228 aa  174  1.9999999999999998e-42  Conexibacter woesei DSM 14684  Bacteria  normal  0.0354189  normal  0.736565 
 
 
-
 
NC_013174  Jden_2514  two component transcriptional regulator, LuxR family  43.98 
 
 
230 aa  174  1.9999999999999998e-42  Jonesia denitrificans DSM 20603  Bacteria  normal  0.135771  normal  0.887193 
 
 
-
 
NC_013169  Ksed_04500  response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain  41.84 
 
 
244 aa  173  1.9999999999999998e-42  Kytococcus sedentarius DSM 20547  Bacteria  normal  normal 
 
 
-
 
NC_009767  Rcas_1142  two component LuxR family transcriptional regulator  40.98 
 
 
222 aa  173  2.9999999999999996e-42  Roseiflexus castenholzii DSM 13941  Bacteria  normal  0.661777  normal 
 
 
-
 
NC_014165  Tbis_1846  LuxR family two component transcriptional regulator  42.15 
 
 
226 aa  172  3.9999999999999995e-42  Thermobispora bispora DSM 43833  Bacteria  normal  0.699471  normal 
 
 
-
 
NC_013510  Tcur_2302  two component transcriptional regulator, LuxR family  40.33 
 
 
226 aa  172  5e-42  Thermomonospora curvata DSM 43183  Bacteria  normal  0.0191252  n/a   
 
 
-
 
NC_014165  Tbis_0951  LuxR family two component transcriptional regulator  41.08 
 
 
221 aa  171  6.999999999999999e-42  Thermobispora bispora DSM 43833  Bacteria  normal  0.392411  normal  0.343359 
 
 
-
 
NC_013131  Caci_7415  two component transcriptional regulator, LuxR family  42.74 
 
 
228 aa  171  7.999999999999999e-42  Catenulispora acidiphila DSM 44928  Bacteria  normal  0.933403  normal 
 
 
-
 
NC_013739  Cwoe_0356  two component transcriptional regulator, LuxR family  44.9 
 
 
220 aa  171  7.999999999999999e-42  Conexibacter woesei DSM 14684  Bacteria  normal  0.165726  normal  0.0985551 
 
 
-
 
NC_013739  Cwoe_0366  two component transcriptional regulator, LuxR family  43.67 
 
 
220 aa  171  7.999999999999999e-42  Conexibacter woesei DSM 14684  Bacteria  normal  0.0587069  normal  0.203995 
 
 
-
 
NC_013131  Caci_7105  two component transcriptional regulator, LuxR family  41.08 
 
 
241 aa  171  9e-42  Catenulispora acidiphila DSM 44928  Bacteria  normal  0.106023  normal  0.469545 
 
 
-
 
NC_013235  Namu_3387  two component transcriptional regulator, LuxR family  43.21 
 
 
223 aa  171  1e-41  Nakamurella multipartita DSM 44233  Bacteria  hitchhiker  0.0000386408  hitchhiker  0.000570848 
 
 
-
 
NC_013131  Caci_8412  two component transcriptional regulator, LuxR family  39.17 
 
 
239 aa  170  2e-41  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal 
 
 
-
 
NC_013595  Sros_1910  response regulator receiver protein  42.56 
 
 
226 aa  169  3e-41  Streptosporangium roseum DSM 43021  Bacteria  normal  0.238062  normal  0.36963 
 
 
-
 
NC_014210  Ndas_4254  two component transcriptional regulator, LuxR family  40.5 
 
 
225 aa  169  3e-41  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  0.867992  normal  0.287586 
 
 
-
 
NC_012669  Bcav_1049  two component transcriptional regulator, LuxR family  42.56 
 
 
222 aa  169  3e-41  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.661499  normal  0.245945 
 
 
-
 
NC_012669  Bcav_4002  two component transcriptional regulator, LuxR family  42.8 
 
 
222 aa  169  3e-41  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.947887  normal  0.770727 
 
 
-
 
NC_013131  Caci_6705  two component transcriptional regulator, LuxR family  39.62 
 
 
258 aa  169  4e-41  Catenulispora acidiphila DSM 44928  Bacteria  normal  0.318103  normal  0.0731204 
 
 
-
 
NC_007413  Ava_2028  two component LuxR family transcriptional regulator  38.91 
 
 
219 aa  169  5e-41  Anabaena variabilis ATCC 29413  Bacteria  normal  0.515359  normal 
 
 
-
 
NC_012669  Bcav_0335  two component transcriptional regulator, LuxR family  44.08 
 
 
220 aa  169  5e-41  Beutenbergia cavernae DSM 12333  Bacteria  normal  normal 
 
 
-
 
NC_012669  Bcav_0102  two component transcriptional regulator, LuxR family  42.56 
 
 
221 aa  168  6e-41  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.0637251  normal 
 
 
-
 
NC_013093  Amir_7009  two component transcriptional regulator, LuxR family  40.74 
 
 
218 aa  168  7e-41  Actinosynnema mirum DSM 43827  Bacteria  normal  0.0896567  n/a   
 
 
-
 
NC_013595  Sros_3669  response regulator receiver protein  42.56 
 
 
213 aa  168  9e-41  Streptosporangium roseum DSM 43021  Bacteria  normal  normal 
 
 
-
 
NC_008699  Noca_1020  response regulator receiver  41.32 
 
 
218 aa  167  1e-40  Nocardioides sp. JS614  Bacteria  normal  0.648692  n/a   
 
 
-
 
NC_014158  Tpau_3507  two component transcriptional regulator, LuxR family  43.51 
 
 
213 aa  167  1e-40  Tsukamurella paurometabola DSM 20162  Bacteria  normal  0.892641  n/a   
 
 
-
 
NC_009664  Krad_1981  two component transcriptional regulator, LuxR family  40.66 
 
 
230 aa  167  1e-40  Kineococcus radiotolerans SRS30216  Bacteria  normal  normal 
 
 
-
 
NC_013739  Cwoe_4937  two component transcriptional regulator, LuxR family  41.74 
 
 
224 aa  167  1e-40  Conexibacter woesei DSM 14684  Bacteria  normal  0.570807  normal  0.210467 
 
 
-
 
NC_013530  Xcel_2601  two component transcriptional regulator, LuxR family  40.91 
 
 
234 aa  167  1e-40  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  0.1212  n/a   
 
 
-
 
NC_013947  Snas_5262  two component transcriptional regulator, LuxR family  42.02 
 
 
219 aa  167  1e-40  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  normal 
 
 
-
 
NC_013174  Jden_1873  two component transcriptional regulator, LuxR family  39.17 
 
 
233 aa  166  2e-40  Jonesia denitrificans DSM 20603  Bacteria  normal  0.145213  normal  0.385799 
 
 
-
 
NC_013595  Sros_4508  response regulator receiver protein  42.15 
 
 
219 aa  167  2e-40  Streptosporangium roseum DSM 43021  Bacteria  normal  0.401356  normal  0.568133 
 
 
-
 
NC_009921  Franean1_3185  two component LuxR family transcriptional regulator  41.74 
 
 
223 aa  167  2e-40  Frankia sp. EAN1pec  Bacteria  normal  0.704721  normal 
 
 
-
 
NC_009921  Franean1_7161  two component LuxR family transcriptional regulator  41.91 
 
 
225 aa  167  2e-40  Frankia sp. EAN1pec  Bacteria  normal  0.0588186  normal  0.118819 
 
 
-
 
NC_013131  Caci_8900  two component transcriptional regulator, LuxR family  43.15 
 
 
221 aa  167  2e-40  Catenulispora acidiphila DSM 44928  Bacteria  normal  0.967084  normal 
 
 
-
 
NC_012669  Bcav_2822  two component transcriptional regulator, LuxR family  40 
 
 
231 aa  167  2e-40  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.311075  normal 
 
 
-
 
NC_009523  RoseRS_3421  two component LuxR family transcriptional regulator  40.57 
 
 
223 aa  166  2.9999999999999998e-40  Roseiflexus sp. RS-1  Bacteria  normal  normal  0.0556432 
 
 
-
 
NC_013510  Tcur_4491  two component transcriptional regulator, LuxR family  41.08 
 
 
225 aa  166  2.9999999999999998e-40  Thermomonospora curvata DSM 43183  Bacteria  normal  n/a   
 
 
-
 
NC_013595  Sros_0199  response regulator receiver protein  41.18 
 
 
213 aa  166  4e-40  Streptosporangium roseum DSM 43021  Bacteria  normal  normal 
 
 
-
 
NC_013947  Snas_2037  two component transcriptional regulator, LuxR family  42.15 
 
 
225 aa  165  5e-40  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  normal  0.137578 
 
 
-
 
NC_009921  Franean1_6351  two component LuxR family transcriptional regulator  41.08 
 
 
244 aa  165  5.9999999999999996e-40  Frankia sp. EAN1pec  Bacteria  normal  normal 
 
 
-
 
NC_013510  Tcur_0110  two component transcriptional regulator, LuxR family  42.56 
 
 
222 aa  165  5.9999999999999996e-40  Thermomonospora curvata DSM 43183  Bacteria  normal  n/a   
 
 
-
 
NC_013739  Cwoe_1616  two component transcriptional regulator, LuxR family  41.98 
 
 
229 aa  165  5.9999999999999996e-40  Conexibacter woesei DSM 14684  Bacteria  normal  normal 
 
 
-
 
NC_013595  Sros_1523  response regulator receiver protein  40.08 
 
 
215 aa  165  6.9999999999999995e-40  Streptosporangium roseum DSM 43021  Bacteria  normal  0.894169  normal  0.0152488 
 
 
-
 
NC_013595  Sros_3998  response regulator receiver protein  39 
 
 
233 aa  165  8e-40  Streptosporangium roseum DSM 43021  Bacteria  normal  0.363745  normal  0.263649 
 
 
-
 
NC_013947  Snas_3676  two component transcriptional regulator, LuxR family  41.56 
 
 
214 aa  165  8e-40  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.0625047  normal  0.0780809 
 
 
-
 
NC_013521  Sked_25620  response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain  42.02 
 
 
219 aa  164  1.0000000000000001e-39  Sanguibacter keddieii DSM 10542  Bacteria  normal  normal  0.263807 
 
 
-
 
NC_014151  Cfla_2842  two component transcriptional regulator, LuxR family  40.5 
 
 
226 aa  164  1.0000000000000001e-39  Cellulomonas flavigena DSM 20109  Bacteria  normal  0.622781  decreased coverage  0.00305681 
 
 
-
 
NC_013595  Sros_2445  response regulator receiver protein  41.74 
 
 
218 aa  164  1.0000000000000001e-39  Streptosporangium roseum DSM 43021  Bacteria  normal  0.0115114  normal  0.02149 
 
 
-
 
NC_014210  Ndas_3601  two component transcriptional regulator, LuxR family  43.98 
 
 
222 aa  163  2.0000000000000002e-39  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  0.324048  normal 
 
 
-
 
NC_013739  Cwoe_1269  two component transcriptional regulator, LuxR family  42.15 
 
 
226 aa  164  2.0000000000000002e-39  Conexibacter woesei DSM 14684  Bacteria  normal  hitchhiker  0.00432991 
 
 
-
 
NC_013441  Gbro_4119  response regulator receiver  41.15 
 
 
230 aa  163  2.0000000000000002e-39  Gordonia bronchialis DSM 43247  Bacteria  normal  n/a   
 
 
-
 
NC_013595  Sros_3244  response regulator receiver protein  41.74 
 
 
218 aa  163  2.0000000000000002e-39  Streptosporangium roseum DSM 43021  Bacteria  hitchhiker  0.000568428  normal  0.332742 
 
 
-
 
NC_013595  Sros_6161  response regulator receiver protein  42.56 
 
 
221 aa  163  3e-39  Streptosporangium roseum DSM 43021  Bacteria  normal  0.902987  decreased coverage  0.000109123 
 
 
-
 
NC_012669  Bcav_2449  two component transcriptional regulator, LuxR family  38.84 
 
 
220 aa  162  3e-39  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.729355  normal 
 
 
-
 
NC_013530  Xcel_1618  two component transcriptional regulator, LuxR family  42.74 
 
 
220 aa  163  3e-39  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  n/a   
 
 
-
 
NC_013093  Amir_6235  two component transcriptional regulator, LuxR family  41.74 
 
 
215 aa  162  4.0000000000000004e-39  Actinosynnema mirum DSM 43827  Bacteria  normal  0.502704  n/a   
 
 
-
 
NC_013172  Bfae_11600  response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain  41.08 
 
 
225 aa  162  5.0000000000000005e-39  Brachybacterium faecium DSM 4810  Bacteria  decreased coverage  0.00120804  n/a   
 
 
-
 
NC_013521  Sked_36930  response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain  40.74 
 
 
222 aa  162  5.0000000000000005e-39  Sanguibacter keddieii DSM 10542  Bacteria  normal  normal  0.811978 
 
 
-
 
NC_013204  Elen_2822  two component transcriptional regulator, LuxR family  39.17 
 
 
228 aa  162  5.0000000000000005e-39  Eggerthella lenta DSM 2243  Bacteria  normal  0.0415698  normal  0.590713 
 
 
-
 
NC_013595  Sros_3251  response regulator receiver protein  39.34 
 
 
221 aa  162  5.0000000000000005e-39  Streptosporangium roseum DSM 43021  Bacteria  normal  0.0793449  normal 
 
 
-
 
NC_013521  Sked_08490  response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain  39.51 
 
 
236 aa  162  6e-39  Sanguibacter keddieii DSM 10542  Bacteria  normal  0.199706  normal  0.526513 
 
 
-
 
NC_011886  Achl_2270  two component transcriptional regulator, LuxR family  42.74 
 
 
242 aa  162  6e-39  Arthrobacter chlorophenolicus A6  Bacteria  n/a    hitchhiker  0.000000000113212 
 
 
-
 
NC_013947  Snas_2557  two component transcriptional regulator, LuxR family  41.32 
 
 
224 aa  162  6e-39  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.231398  normal  0.0978001 
 
 
-
 
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