| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RoseRS_3421 |
|---|
| Symbol | |
|---|
| ID | 5210398 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Roseiflexus sp. RS-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009523 |
|---|
| Strand | + |
|---|
| Start bp | 4294258 |
|---|
| End bp | 4294929 |
|---|
| Gene Length | 672 bp |
|---|
| Protein Length | 223 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 640597016 |
|---|
| Product | two component LuxR family transcriptional regulator |
|---|
| Protein accession | YP_001277729 |
|---|
| Protein GI | 148657524 |
|---|
| COG category | [K] Transcription
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG2197] Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 23 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 5 |
|---|
| Fosmid unclonability p-value | 0.0556432 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATCCGGG TGTTACTGGT CGATGATCAG ACCCTGATCC GTCAGGGGAT CGCCATGCTG
CTGGAACTCG AACCAGACCT GGAAGTCGTC GGCGCGGTCG GCGACGGACG CGCCGCGATT
GAGGCGGTCG AGCGCCTGCG TCCCGATGTG GTGCTGATGG ATGTGCGCAT GCCGGAAATG
GACGGAGTGA CGGCGACACG CGAGTTGCAC CGCCGTTTCC CTGACGTCGG CGTGATCATT
CTGACGACCT TCGATGACGA CGAGTATATT TTCGAGGGGT TGAAGGCAGG GGCGCGCGGG
TATCTGCTGA AAGACATCAG CAGCGAAGAA ATGGCGGAAG CGGTGCGAAC GGTTGCGCGC
GGCGAAGCGC TGATCCAGCC GAGTATCGCG CGCAAAGTCG TGGCTGAGTT CTCACGCCTG
GCAGCCGGTT CGCCGCCGGC GCCGGAGCGA AGCCCACTGA AGCTGCCCGC TGCCCTGACC
GAACGTGAAC TGGACGTGCT CAAAGCGCTT GCCCGCGGCA TGTCGAACAA AGAGATCGCC
GCTGCACTGG TGATCACCGA GGGGACGGTC AAGACGCATA TCTCGAACAT CCTGGCAAAA
CTCGATGTGC GCGACCGAAC ACAGGCAGTG TTGAAGGCGC AGCAATTGCG GTTGTTGGAG
AGTGAGAACT GA
|
|---|
| Protein sequence | MIRVLLVDDQ TLIRQGIAML LELEPDLEVV GAVGDGRAAI EAVERLRPDV VLMDVRMPEM
DGVTATRELH RRFPDVGVII LTTFDDDEYI FEGLKAGARG YLLKDISSEE MAEAVRTVAR
GEALIQPSIA RKVVAEFSRL AAGSPPAPER SPLKLPAALT ERELDVLKAL ARGMSNKEIA
AALVITEGTV KTHISNILAK LDVRDRTQAV LKAQQLRLLE SEN
|
|---|
| |