Gene RoseRS_3421 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRoseRS_3421 
Symbol 
ID5210398 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRoseiflexus sp. RS-1 
KingdomBacteria 
Replicon accessionNC_009523 
Strand
Start bp4294258 
End bp4294929 
Gene Length672 bp 
Protein Length223 aa 
Translation table11 
GC content62% 
IMG OID640597016 
Producttwo component LuxR family transcriptional regulator 
Protein accessionYP_001277729 
Protein GI148657524 
COG category[K] Transcription
[T] Signal transduction mechanisms 
COG ID[COG2197] Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones23 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.0556432 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGATCCGGG TGTTACTGGT CGATGATCAG ACCCTGATCC GTCAGGGGAT CGCCATGCTG 
CTGGAACTCG AACCAGACCT GGAAGTCGTC GGCGCGGTCG GCGACGGACG CGCCGCGATT
GAGGCGGTCG AGCGCCTGCG TCCCGATGTG GTGCTGATGG ATGTGCGCAT GCCGGAAATG
GACGGAGTGA CGGCGACACG CGAGTTGCAC CGCCGTTTCC CTGACGTCGG CGTGATCATT
CTGACGACCT TCGATGACGA CGAGTATATT TTCGAGGGGT TGAAGGCAGG GGCGCGCGGG
TATCTGCTGA AAGACATCAG CAGCGAAGAA ATGGCGGAAG CGGTGCGAAC GGTTGCGCGC
GGCGAAGCGC TGATCCAGCC GAGTATCGCG CGCAAAGTCG TGGCTGAGTT CTCACGCCTG
GCAGCCGGTT CGCCGCCGGC GCCGGAGCGA AGCCCACTGA AGCTGCCCGC TGCCCTGACC
GAACGTGAAC TGGACGTGCT CAAAGCGCTT GCCCGCGGCA TGTCGAACAA AGAGATCGCC
GCTGCACTGG TGATCACCGA GGGGACGGTC AAGACGCATA TCTCGAACAT CCTGGCAAAA
CTCGATGTGC GCGACCGAAC ACAGGCAGTG TTGAAGGCGC AGCAATTGCG GTTGTTGGAG
AGTGAGAACT GA
 
Protein sequence
MIRVLLVDDQ TLIRQGIAML LELEPDLEVV GAVGDGRAAI EAVERLRPDV VLMDVRMPEM 
DGVTATRELH RRFPDVGVII LTTFDDDEYI FEGLKAGARG YLLKDISSEE MAEAVRTVAR
GEALIQPSIA RKVVAEFSRL AAGSPPAPER SPLKLPAALT ERELDVLKAL ARGMSNKEIA
AALVITEGTV KTHISNILAK LDVRDRTQAV LKAQQLRLLE SEN