More than 300 homologs were found in PanDaTox collection
for query gene Sked_25620 on replicon NC_013521
Organism: Sanguibacter keddieii DSM 10542



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_013521  Sked_25620  response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain  100 
 
 
219 aa  420  1e-117  Sanguibacter keddieii DSM 10542  Bacteria  normal  normal  0.263807 
 
 
-
 
NC_013172  Bfae_25060  response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain  47.2 
 
 
222 aa  188  5e-47  Brachybacterium faecium DSM 4810  Bacteria  normal  0.444591  n/a   
 
 
-
 
NC_013739  Cwoe_5656  two component transcriptional regulator, LuxR family  51.66 
 
 
222 aa  185  4e-46  Conexibacter woesei DSM 14684  Bacteria  normal  normal 
 
 
-
 
NC_013174  Jden_1602  two component transcriptional regulator, LuxR family  47.69 
 
 
226 aa  179  4e-44  Jonesia denitrificans DSM 20603  Bacteria  normal  normal 
 
 
-
 
NC_013441  Gbro_2730  response regulator receiver  47.2 
 
 
216 aa  178  4.999999999999999e-44  Gordonia bronchialis DSM 43247  Bacteria  normal  0.776601  n/a   
 
 
-
 
NC_014210  Ndas_4417  two component transcriptional regulator, LuxR family  49.76 
 
 
232 aa  177  7e-44  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  normal 
 
 
-
 
NC_013093  Amir_3314  two component transcriptional regulator, LuxR family  49.77 
 
 
222 aa  177  1e-43  Actinosynnema mirum DSM 43827  Bacteria  hitchhiker  0.00833126  n/a   
 
 
-
 
NC_009664  Krad_4263  two component transcriptional regulator, LuxR family  48.11 
 
 
230 aa  177  1e-43  Kineococcus radiotolerans SRS30216  Bacteria  normal  normal  0.455968 
 
 
-
 
NC_014210  Ndas_1125  two component transcriptional regulator, LuxR family  50.93 
 
 
229 aa  173  1.9999999999999998e-42  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  normal  0.306134 
 
 
-
 
NC_007333  Tfu_2233  LuxR response regulator receiver  48.13 
 
 
228 aa  172  3.9999999999999995e-42  Thermobifida fusca YX  Bacteria  normal  n/a   
 
 
-
 
NC_013131  Caci_7658  two component transcriptional regulator, LuxR family  47.66 
 
 
219 aa  171  7.999999999999999e-42  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal 
 
 
-
 
NC_014210  Ndas_2024  two component transcriptional regulator, LuxR family  49.54 
 
 
220 aa  170  1e-41  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  0.876474  normal 
 
 
-
 
NC_009380  Strop_0395  two component LuxR family transcriptional regulator  49.77 
 
 
217 aa  169  3e-41  Salinispora tropica CNB-440  Bacteria  normal  normal 
 
 
-
 
NC_012669  Bcav_2689  two component transcriptional regulator, LuxR family  54.42 
 
 
223 aa  168  4e-41  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.364406  normal  0.346923 
 
 
-
 
NC_009953  Sare_1603  two component LuxR family transcriptional regulator  51.4 
 
 
245 aa  168  6e-41  Salinispora arenicola CNS-205  Bacteria  normal  normal  0.0252513 
 
 
-
 
NC_013595  Sros_8799  response regulator receiver protein  47.39 
 
 
227 aa  167  1e-40  Streptosporangium roseum DSM 43021  Bacteria  normal  0.755207  normal 
 
 
-
 
NC_013595  Sros_1910  response regulator receiver protein  46.51 
 
 
226 aa  167  1e-40  Streptosporangium roseum DSM 43021  Bacteria  normal  0.238062  normal  0.36963 
 
 
-
 
NC_013757  Gobs_1986  two component transcriptional regulator, LuxR family  44.29 
 
 
226 aa  166  2e-40  Geodermatophilus obscurus DSM 43160  Bacteria  normal  n/a   
 
 
-
 
NC_014165  Tbis_0951  LuxR family two component transcriptional regulator  43.84 
 
 
221 aa  166  2e-40  Thermobispora bispora DSM 43833  Bacteria  normal  0.392411  normal  0.343359 
 
 
-
 
NC_013595  Sros_4672  response regulator receiver protein  46.26 
 
 
212 aa  165  4e-40  Streptosporangium roseum DSM 43021  Bacteria  normal  0.223352  normal  0.339353 
 
 
-
 
NC_007333  Tfu_1845  LuxR response regulator receiver  46.26 
 
 
215 aa  165  5e-40  Thermobifida fusca YX  Bacteria  hitchhiker  0.00433344  n/a   
 
 
-
 
NC_013521  Sked_26900  response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain  42.02 
 
 
247 aa  164  8e-40  Sanguibacter keddieii DSM 10542  Bacteria  hitchhiker  0.00793239  normal  0.935402 
 
 
-
 
NC_013947  Snas_5262  two component transcriptional regulator, LuxR family  44.81 
 
 
219 aa  164  8e-40  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  normal 
 
 
-
 
NC_013093  Amir_2010  two component transcriptional regulator, LuxR family  46.41 
 
 
214 aa  163  2.0000000000000002e-39  Actinosynnema mirum DSM 43827  Bacteria  normal  n/a   
 
 
-
 
NC_013510  Tcur_4491  two component transcriptional regulator, LuxR family  45.7 
 
 
225 aa  162  3e-39  Thermomonospora curvata DSM 43183  Bacteria  normal  n/a   
 
 
-
 
NC_014210  Ndas_0782  two component transcriptional regulator, LuxR family  46.73 
 
 
220 aa  162  4.0000000000000004e-39  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  normal 
 
 
-
 
NC_013595  Sros_1523  response regulator receiver protein  43.84 
 
 
215 aa  162  5.0000000000000005e-39  Streptosporangium roseum DSM 43021  Bacteria  normal  0.894169  normal  0.0152488 
 
 
-
 
NC_013595  Sros_3669  response regulator receiver protein  48.13 
 
 
213 aa  161  8.000000000000001e-39  Streptosporangium roseum DSM 43021  Bacteria  normal  normal 
 
 
-
 
NC_013530  Xcel_0759  two component transcriptional regulator, LuxR family  48.82 
 
 
221 aa  160  1e-38  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  0.174089  n/a   
 
 
-
 
NC_014151  Cfla_0822  two component transcriptional regulator, LuxR family  46.98 
 
 
229 aa  160  1e-38  Cellulomonas flavigena DSM 20109  Bacteria  normal  normal 
 
 
-
 
NC_013093  Amir_4051  two component transcriptional regulator, LuxR family  44.5 
 
 
225 aa  159  3e-38  Actinosynnema mirum DSM 43827  Bacteria  decreased coverage  0.00308286  n/a   
 
 
-
 
NC_013595  Sros_2445  response regulator receiver protein  45.91 
 
 
218 aa  159  4e-38  Streptosporangium roseum DSM 43021  Bacteria  normal  0.0115114  normal  0.02149 
 
 
-
 
NC_009921  Franean1_6351  two component LuxR family transcriptional regulator  43.69 
 
 
244 aa  159  4e-38  Frankia sp. EAN1pec  Bacteria  normal  normal 
 
 
-
 
NC_013093  Amir_3696  two component transcriptional regulator, LuxR family  46.73 
 
 
217 aa  158  7e-38  Actinosynnema mirum DSM 43827  Bacteria  normal  n/a   
 
 
-
 
NC_013739  Cwoe_0549  two component transcriptional regulator, LuxR family  46.48 
 
 
220 aa  157  9e-38  Conexibacter woesei DSM 14684  Bacteria  normal  normal 
 
 
-
 
NC_013595  Sros_5905  response regulator receiver protein  43.24 
 
 
227 aa  157  9e-38  Streptosporangium roseum DSM 43021  Bacteria  normal  0.0252894  normal  0.145246 
 
 
-
 
NC_013174  Jden_2514  two component transcriptional regulator, LuxR family  43.96 
 
 
230 aa  157  1e-37  Jonesia denitrificans DSM 20603  Bacteria  normal  0.135771  normal  0.887193 
 
 
-
 
NC_013510  Tcur_2302  two component transcriptional regulator, LuxR family  43.89 
 
 
226 aa  157  1e-37  Thermomonospora curvata DSM 43183  Bacteria  normal  0.0191252  n/a   
 
 
-
 
NC_013595  Sros_4219  response regulator receiver protein  48.37 
 
 
217 aa  157  1e-37  Streptosporangium roseum DSM 43021  Bacteria  hitchhiker  0.0092025  hitchhiker  0.000784643 
 
 
-
 
NC_008699  Noca_1318  response regulator receiver  46.08 
 
 
225 aa  156  2e-37  Nocardioides sp. JS614  Bacteria  normal  n/a   
 
 
-
 
NC_009921  Franean1_3185  two component LuxR family transcriptional regulator  45.37 
 
 
223 aa  156  2e-37  Frankia sp. EAN1pec  Bacteria  normal  0.704721  normal 
 
 
-
 
NC_012669  Bcav_2710  two component transcriptional regulator, LuxR family  48.2 
 
 
230 aa  156  2e-37  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.248821  normal  0.606697 
 
 
-
 
NC_013093  Amir_7009  two component transcriptional regulator, LuxR family  42.47 
 
 
218 aa  155  3e-37  Actinosynnema mirum DSM 43827  Bacteria  normal  0.0896567  n/a   
 
 
-
 
NC_013739  Cwoe_3988  two component transcriptional regulator, LuxR family  45.21 
 
 
228 aa  155  5.0000000000000005e-37  Conexibacter woesei DSM 14684  Bacteria  normal  0.0354189  normal  0.736565 
 
 
-
 
NC_014158  Tpau_0647  two component transcriptional regulator, LuxR family  39.81 
 
 
212 aa  154  8e-37  Tsukamurella paurometabola DSM 20162  Bacteria  normal  0.518884  n/a   
 
 
-
 
NC_013131  Caci_6963  two component transcriptional regulator, LuxR family  44.7 
 
 
225 aa  154  8e-37  Catenulispora acidiphila DSM 44928  Bacteria  normal  0.029709  normal 
 
 
-
 
NC_013131  Caci_7105  two component transcriptional regulator, LuxR family  43.38 
 
 
241 aa  154  9e-37  Catenulispora acidiphila DSM 44928  Bacteria  normal  0.106023  normal  0.469545 
 
 
-
 
NC_013093  Amir_5893  two component transcriptional regulator, LuxR family  42.47 
 
 
218 aa  154  1e-36  Actinosynnema mirum DSM 43827  Bacteria  normal  n/a   
 
 
-
 
NC_013595  Sros_6161  response regulator receiver protein  44.86 
 
 
221 aa  154  1e-36  Streptosporangium roseum DSM 43021  Bacteria  normal  0.902987  decreased coverage  0.000109123 
 
 
-
 
NC_014210  Ndas_3601  two component transcriptional regulator, LuxR family  46.26 
 
 
222 aa  154  1e-36  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  0.324048  normal 
 
 
-
 
NC_013739  Cwoe_4937  two component transcriptional regulator, LuxR family  45 
 
 
224 aa  154  1e-36  Conexibacter woesei DSM 14684  Bacteria  normal  0.570807  normal  0.210467 
 
 
-
 
NC_013510  Tcur_0110  two component transcriptional regulator, LuxR family  43.75 
 
 
222 aa  153  2e-36  Thermomonospora curvata DSM 43183  Bacteria  normal  n/a   
 
 
-
 
NC_014165  Tbis_1846  LuxR family two component transcriptional regulator  42.53 
 
 
226 aa  153  2e-36  Thermobispora bispora DSM 43833  Bacteria  normal  0.699471  normal 
 
 
-
 
NC_013739  Cwoe_0356  two component transcriptional regulator, LuxR family  45.12 
 
 
220 aa  152  2.9999999999999998e-36  Conexibacter woesei DSM 14684  Bacteria  normal  0.165726  normal  0.0985551 
 
 
-
 
NC_012803  Mlut_21900  response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain  44.04 
 
 
230 aa  152  2.9999999999999998e-36  Micrococcus luteus NCTC 2665  Bacteria  hitchhiker  0.00486265  n/a   
 
 
-
 
NC_009921  Franean1_2268  two component LuxR family transcriptional regulator  43.48 
 
 
250 aa  152  4e-36  Frankia sp. EAN1pec  Bacteria  hitchhiker  0.00478344  normal  0.0390494 
 
 
-
 
NC_014210  Ndas_4254  two component transcriptional regulator, LuxR family  41.4 
 
 
225 aa  152  5e-36  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  0.867992  normal  0.287586 
 
 
-
 
NC_014210  Ndas_2780  two component transcriptional regulator, LuxR family  44.75 
 
 
219 aa  152  5e-36  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  0.855193  normal  0.402473 
 
 
-
 
NC_013595  Sros_7301  response regulator receiver protein  43.06 
 
 
220 aa  151  5.9999999999999996e-36  Streptosporangium roseum DSM 43021  Bacteria  normal  normal 
 
 
-
 
NC_013169  Ksed_06250  response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain  46.08 
 
 
228 aa  151  7e-36  Kytococcus sedentarius DSM 20547  Bacteria  normal  normal 
 
 
-
 
NC_009664  Krad_1198  two component transcriptional regulator, LuxR family  41.7 
 
 
225 aa  151  7e-36  Kineococcus radiotolerans SRS30216  Bacteria  normal  0.109916  normal  0.0247339 
 
 
-
 
NC_013510  Tcur_1300  two component transcriptional regulator, LuxR family  45.58 
 
 
215 aa  151  7e-36  Thermomonospora curvata DSM 43183  Bacteria  normal  0.145336  n/a   
 
 
-
 
NC_012669  Bcav_0236  two component transcriptional regulator, LuxR family  45.74 
 
 
224 aa  151  7e-36  Beutenbergia cavernae DSM 12333  Bacteria  normal  normal 
 
 
-
 
NC_013595  Sros_5499  response regulator receiver protein  43.12 
 
 
213 aa  151  8e-36  Streptosporangium roseum DSM 43021  Bacteria  decreased coverage  0.00659712  normal  0.108677 
 
 
-
 
NC_013131  Caci_8412  two component transcriptional regulator, LuxR family  42.52 
 
 
239 aa  150  1e-35  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal 
 
 
-
 
NC_013947  Snas_3714  two component transcriptional regulator, LuxR family  45.75 
 
 
225 aa  150  1e-35  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  normal  0.176655 
 
 
-
 
NC_013530  Xcel_2601  two component transcriptional regulator, LuxR family  43.42 
 
 
234 aa  150  1e-35  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  0.1212  n/a   
 
 
-
 
NC_013172  Bfae_20460  response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain  41.63 
 
 
229 aa  150  1e-35  Brachybacterium faecium DSM 4810  Bacteria  normal  0.0212792  n/a   
 
 
-
 
NC_013093  Amir_6405  two component transcriptional regulator, LuxR family  44.04 
 
 
225 aa  150  1e-35  Actinosynnema mirum DSM 43827  Bacteria  normal  n/a   
 
 
-
 
NC_012669  Bcav_4002  two component transcriptional regulator, LuxR family  44.84 
 
 
222 aa  150  1e-35  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.947887  normal  0.770727 
 
 
-
 
NC_013947  Snas_0625  two component transcriptional regulator, LuxR family  42.79 
 
 
216 aa  150  2e-35  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.732521  normal 
 
 
-
 
NC_013093  Amir_0601  two component transcriptional regulator, LuxR family  43.38 
 
 
215 aa  149  2e-35  Actinosynnema mirum DSM 43827  Bacteria  normal  n/a   
 
 
-
 
NC_009921  Franean1_3846  two component LuxR family transcriptional regulator  44.44 
 
 
249 aa  149  2e-35  Frankia sp. EAN1pec  Bacteria  normal  0.525033  normal  0.770826 
 
 
-
 
NC_013595  Sros_7211  response regulator receiver protein  45.97 
 
 
215 aa  149  2e-35  Streptosporangium roseum DSM 43021  Bacteria  normal  normal  0.0769384 
 
 
-
 
NC_012669  Bcav_0102  two component transcriptional regulator, LuxR family  43.38 
 
 
221 aa  149  2e-35  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.0637251  normal 
 
 
-
 
NC_012669  Bcav_2449  two component transcriptional regulator, LuxR family  45.25 
 
 
220 aa  150  2e-35  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.729355  normal 
 
 
-
 
NC_013530  Xcel_1633  two component transcriptional regulator, LuxR family  45.33 
 
 
241 aa  149  3e-35  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  0.457155  n/a   
 
 
-
 
NC_013595  Sros_5304  response regulator receiver protein  45.97 
 
 
220 aa  149  3e-35  Streptosporangium roseum DSM 43021  Bacteria  normal  0.128918  normal 
 
 
-
 
NC_013169  Ksed_04500  response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain  42.47 
 
 
244 aa  149  3e-35  Kytococcus sedentarius DSM 20547  Bacteria  normal  normal 
 
 
-
 
NC_013739  Cwoe_1616  two component transcriptional regulator, LuxR family  44 
 
 
229 aa  149  4e-35  Conexibacter woesei DSM 14684  Bacteria  normal  normal 
 
 
-
 
NC_009664  Krad_4217  two component transcriptional regulator, LuxR family  45 
 
 
225 aa  149  4e-35  Kineococcus radiotolerans SRS30216  Bacteria  decreased coverage  0.000816589  normal  0.757819 
 
 
-
 
NC_014158  Tpau_1874  two component transcriptional regulator, LuxR family  45.83 
 
 
213 aa  149  4e-35  Tsukamurella paurometabola DSM 20162  Bacteria  normal  0.635222  n/a   
 
 
-
 
NC_013947  Snas_0178  two component transcriptional regulator, LuxR family  47.62 
 
 
221 aa  148  5e-35  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  normal 
 
 
-
 
NC_013947  Snas_4946  two component transcriptional regulator, LuxR family  41.2 
 
 
224 aa  148  5e-35  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.13115  normal 
 
 
-
 
NC_012669  Bcav_1049  two component transcriptional regulator, LuxR family  43.24 
 
 
222 aa  148  6e-35  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.661499  normal  0.245945 
 
 
-
 
NC_013595  Sros_4577  response regulator receiver protein  41.52 
 
 
223 aa  148  7e-35  Streptosporangium roseum DSM 43021  Bacteria  normal  normal  0.172592 
 
 
-
 
NC_009767  Rcas_1142  two component LuxR family transcriptional regulator  42.86 
 
 
222 aa  147  9e-35  Roseiflexus castenholzii DSM 13941  Bacteria  normal  0.661777  normal 
 
 
-
 
NC_013093  Amir_6235  two component transcriptional regulator, LuxR family  43.84 
 
 
215 aa  147  9e-35  Actinosynnema mirum DSM 43827  Bacteria  normal  0.502704  n/a   
 
 
-
 
NC_013595  Sros_0199  response regulator receiver protein  41.4 
 
 
213 aa  147  9e-35  Streptosporangium roseum DSM 43021  Bacteria  normal  normal 
 
 
-
 
NC_013510  Tcur_2469  two component transcriptional regulator, LuxR family  45.28 
 
 
229 aa  147  1.0000000000000001e-34  Thermomonospora curvata DSM 43183  Bacteria  hitchhiker  0.000889267  n/a   
 
 
-
 
NC_013131  Caci_2656  two component transcriptional regulator, LuxR family  44.04 
 
 
226 aa  147  1.0000000000000001e-34  Catenulispora acidiphila DSM 44928  Bacteria  normal  0.161573  normal 
 
 
-
 
NC_013947  Snas_5595  two component transcriptional regulator, LuxR family  42.13 
 
 
215 aa  147  1.0000000000000001e-34  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  normal 
 
 
-
 
NC_007413  Ava_2028  two component LuxR family transcriptional regulator  40.48 
 
 
219 aa  146  2.0000000000000003e-34  Anabaena variabilis ATCC 29413  Bacteria  normal  0.515359  normal 
 
 
-
 
NC_013947  Snas_1960  two component transcriptional regulator, LuxR family  43.46 
 
 
216 aa  147  2.0000000000000003e-34  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  normal 
 
 
-
 
NC_013159  Svir_32780  response regulator containing a CheY-like receiver domain protein and an HTH DNA-binding domain protein  43.06 
 
 
216 aa  147  2.0000000000000003e-34  Saccharomonospora viridis DSM 43017  Bacteria  normal  normal 
 
 
-
 
NC_013595  Sros_2533  response regulator receiver protein  40.91 
 
 
220 aa  145  3e-34  Streptosporangium roseum DSM 43021  Bacteria  normal  normal  0.495874 
 
 
-
 
NC_013947  Snas_2037  two component transcriptional regulator, LuxR family  40.79 
 
 
225 aa  146  3e-34  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  normal  0.137578 
 
 
-
 
NC_008699  Noca_1020  response regulator receiver  41.67 
 
 
218 aa  145  4.0000000000000006e-34  Nocardioides sp. JS614  Bacteria  normal  0.648692  n/a   
 
 
-
 
NC_014210  Ndas_4857  two component transcriptional regulator, LuxR family  39.83 
 
 
234 aa  145  4.0000000000000006e-34  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  normal  0.243741 
 
 
-
 
NC_013235  Namu_0544  two component transcriptional regulator, LuxR family  40.93 
 
 
215 aa  145  5e-34  Nakamurella multipartita DSM 44233  Bacteria  normal  normal 
 
 
-
 
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