| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Franean1_2268 |
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| Symbol | |
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| ID | 5670667 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Frankia sp. EAN1pec |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009921 |
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| Strand | - |
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| Start bp | 2709814 |
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| End bp | 2710566 |
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| Gene Length | 753 bp |
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| Protein Length | 250 aa |
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| Translation table | 11 |
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| GC content | 76% |
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| IMG OID | 641241188 |
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| Product | two component LuxR family transcriptional regulator |
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| Protein accession | YP_001506609 |
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| Protein GI | 158314101 |
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| COG category | [K] Transcription
[T] Signal transduction mechanisms |
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| COG ID | [COG2197] Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain |
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| TIGRFAM ID | [TIGR02937] RNA polymerase sigma factor, sigma-70 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.00478344 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 7 |
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| Fosmid unclonability p-value | 0.0390494 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | TTGACCACCG GCCCGGCGCC GGACGGAGAC GCGCCCGTCC GGGTCCTGGT CGTCGACGAC
GACGCGCTCG TCCGCTCCGC GCTGGCGATG ATGTTCGACG GCGCCGACGG CGCGCGCATC
GTCGGCGAGG CGACCGACGG CGACGAGGTC GCCGCTGCCG TCGACGCGCT GCGCCCGGAC
GTCGTCCTGA TGGACATCCG GATGGCGCGG GTGGACGGGC TGCGGGCCAC CGAGCTGCTG
CTCGCCCGCG ACCAGCCGCC CCAGGTCGTC GTGCTGACCA CCTTCGACGC GGACGACCAG
GTGCTGCGCG CGCTGCGGGC CGGCGCAAGC GGCTTCCTGC TCAAGGACAC TCCGCCGGCC
GAGATCGTGC GGGCGGTGCT GCGGGTGGCG GCCGGGGAGC CGATACTCTC CCCCACCGTC
ACCCGCCAGC TCATCGCCCG GATCGCGGCG GTGGAGGCCG CCCCGCCACC GGACGCCCCG
CCACCGGCCG TCGCGGCACA GGCCGTGGCA GCGGAACGCT CGGCGGCCCG CCGCACGGCT
GCCCGCCAGG CCGTCGCCCA GCTCAGCGCG CGGGAGCGGG AGGTGGCGCT TGCGGTGGGC
CGGGGCCTGT CGAACGCGGA GATCGCCGGC GAGCTGTTCA TGAGCGTGGC GACGGCGAAG
TCGTATGTCT CCCGGCTGCT GACCAAGCTC GCCCTGAGCA ACCGGGTGCA GCTCGCCCTG
CTCGTCCACG ACGCCGAGGA GCCCGTGGGA TGA
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| Protein sequence | MTTGPAPDGD APVRVLVVDD DALVRSALAM MFDGADGARI VGEATDGDEV AAAVDALRPD
VVLMDIRMAR VDGLRATELL LARDQPPQVV VLTTFDADDQ VLRALRAGAS GFLLKDTPPA
EIVRAVLRVA AGEPILSPTV TRQLIARIAA VEAAPPPDAP PPAVAAQAVA AERSAARRTA
ARQAVAQLSA REREVALAVG RGLSNAEIAG ELFMSVATAK SYVSRLLTKL ALSNRVQLAL
LVHDAEEPVG
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