More than 300 homologs were found in PanDaTox collection
for query gene Amir_6405 on replicon NC_013093
Organism: Actinosynnema mirum DSM 43827



Page 1 of 3    << first  < prev  1  2  3    next >  last >>   


Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_013093  Amir_6405  two component transcriptional regulator, LuxR family  100 
 
 
225 aa  439  9.999999999999999e-123  Actinosynnema mirum DSM 43827  Bacteria  normal  n/a   
 
 
-
 
NC_013093  Amir_4511  two component transcriptional regulator, LuxR family  66.81 
 
 
226 aa  288  6e-77  Actinosynnema mirum DSM 43827  Bacteria  normal  0.11054  n/a   
 
 
-
 
NC_013757  Gobs_2015  two component transcriptional regulator, LuxR family  64.07 
 
 
232 aa  266  2.9999999999999995e-70  Geodermatophilus obscurus DSM 43160  Bacteria  normal  0.706703  n/a   
 
 
-
 
NC_013521  Sked_36930  response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain  62.61 
 
 
222 aa  266  2.9999999999999995e-70  Sanguibacter keddieii DSM 10542  Bacteria  normal  normal  0.811978 
 
 
-
 
NC_013131  Caci_1951  two component transcriptional regulator, LuxR family  62.21 
 
 
226 aa  261  4e-69  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal  0.0924411 
 
 
-
 
NC_013235  Namu_3387  two component transcriptional regulator, LuxR family  59.91 
 
 
223 aa  255  4e-67  Nakamurella multipartita DSM 44233  Bacteria  hitchhiker  0.0000386408  hitchhiker  0.000570848 
 
 
-
 
NC_013131  Caci_7160  two component transcriptional regulator, LuxR family  61.54 
 
 
224 aa  254  9e-67  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal 
 
 
-
 
NC_013131  Caci_3748  two component transcriptional regulator, LuxR family  60.55 
 
 
236 aa  252  3e-66  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal 
 
 
-
 
NC_009921  Franean1_3390  two component LuxR family transcriptional regulator  59.73 
 
 
226 aa  250  2e-65  Frankia sp. EAN1pec  Bacteria  normal  0.0389848  normal 
 
 
-
 
NC_009921  Franean1_4684  two component LuxR family transcriptional regulator  59.81 
 
 
223 aa  248  4e-65  Frankia sp. EAN1pec  Bacteria  normal  0.51425  normal 
 
 
-
 
NC_009921  Franean1_3727  two component LuxR family transcriptional regulator  58.41 
 
 
226 aa  241  5e-63  Frankia sp. EAN1pec  Bacteria  normal  normal  0.554715 
 
 
-
 
NC_013947  Snas_4662  two component transcriptional regulator, LuxR family  58.9 
 
 
221 aa  238  5e-62  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.142047  hitchhiker  0.00679998 
 
 
-
 
NC_012669  Bcav_0102  two component transcriptional regulator, LuxR family  61.01 
 
 
221 aa  238  5.999999999999999e-62  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.0637251  normal 
 
 
-
 
NC_013595  Sros_4508  response regulator receiver protein  58.06 
 
 
219 aa  235  5.0000000000000005e-61  Streptosporangium roseum DSM 43021  Bacteria  normal  0.401356  normal  0.568133 
 
 
-
 
NC_013947  Snas_4946  two component transcriptional regulator, LuxR family  58.99 
 
 
224 aa  234  1.0000000000000001e-60  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.13115  normal 
 
 
-
 
NC_014210  Ndas_3601  two component transcriptional regulator, LuxR family  58.48 
 
 
222 aa  233  2.0000000000000002e-60  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  0.324048  normal 
 
 
-
 
NC_013595  Sros_5619  response regulator receiver protein  57.21 
 
 
226 aa  233  2.0000000000000002e-60  Streptosporangium roseum DSM 43021  Bacteria  normal  0.0556461  normal  0.802866 
 
 
-
 
NC_013947  Snas_2037  two component transcriptional regulator, LuxR family  57.14 
 
 
225 aa  232  3e-60  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  normal  0.137578 
 
 
-
 
NC_013595  Sros_8243  response regulator receiver protein  58.64 
 
 
217 aa  229  3e-59  Streptosporangium roseum DSM 43021  Bacteria  normal  0.931194  normal  0.230681 
 
 
-
 
NC_013739  Cwoe_4855  two component transcriptional regulator, LuxR family  56.03 
 
 
244 aa  229  3e-59  Conexibacter woesei DSM 14684  Bacteria  normal  0.093919  normal 
 
 
-
 
NC_014210  Ndas_1972  two component transcriptional regulator, LuxR family  57.73 
 
 
217 aa  228  4e-59  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  unclonable  0.0000000794288  unclonable  0.0000000332591 
 
 
-
 
NC_013947  Snas_3287  two component transcriptional regulator, LuxR family  53.64 
 
 
233 aa  227  1e-58  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.0842926  normal  0.330639 
 
 
-
 
NC_009921  Franean1_7117  two component LuxR family transcriptional regulator  56.02 
 
 
214 aa  226  2e-58  Frankia sp. EAN1pec  Bacteria  normal  normal 
 
 
-
 
NC_013947  Snas_0645  two component transcriptional regulator, LuxR family  57.21 
 
 
220 aa  225  4e-58  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.691779  normal 
 
 
-
 
NC_013510  Tcur_0110  two component transcriptional regulator, LuxR family  56.82 
 
 
222 aa  223  1e-57  Thermomonospora curvata DSM 43183  Bacteria  normal  n/a   
 
 
-
 
NC_014210  Ndas_2087  two component transcriptional regulator, LuxR family  56.5 
 
 
247 aa  223  2e-57  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  0.73112  normal 
 
 
-
 
NC_013530  Xcel_1618  two component transcriptional regulator, LuxR family  57.01 
 
 
220 aa  223  3e-57  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  n/a   
 
 
-
 
NC_012669  Bcav_4002  two component transcriptional regulator, LuxR family  55.91 
 
 
222 aa  221  9.999999999999999e-57  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.947887  normal  0.770727 
 
 
-
 
NC_013595  Sros_8793  response regulator receiver protein  54.55 
 
 
221 aa  220  9.999999999999999e-57  Streptosporangium roseum DSM 43021  Bacteria  normal  0.321987  normal 
 
 
-
 
NC_013947  Snas_5265  two component transcriptional regulator, LuxR family  54.38 
 
 
218 aa  220  1.9999999999999999e-56  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  normal 
 
 
-
 
NC_013595  Sros_1523  response regulator receiver protein  53.92 
 
 
215 aa  219  3e-56  Streptosporangium roseum DSM 43021  Bacteria  normal  0.894169  normal  0.0152488 
 
 
-
 
NC_013947  Snas_1740  two component transcriptional regulator, LuxR family  54.67 
 
 
228 aa  218  3.9999999999999997e-56  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  normal 
 
 
-
 
NC_013131  Caci_6049  two component transcriptional regulator, LuxR family  57.34 
 
 
224 aa  218  7.999999999999999e-56  Catenulispora acidiphila DSM 44928  Bacteria  normal  0.764436  normal 
 
 
-
 
NC_013441  Gbro_4119  response regulator receiver  53.6 
 
 
230 aa  218  7.999999999999999e-56  Gordonia bronchialis DSM 43247  Bacteria  normal  n/a   
 
 
-
 
NC_014165  Tbis_1846  LuxR family two component transcriptional regulator  55.86 
 
 
226 aa  215  2.9999999999999998e-55  Thermobispora bispora DSM 43833  Bacteria  normal  0.699471  normal 
 
 
-
 
NC_007333  Tfu_0767  LuxR response regulator receiver  55.25 
 
 
221 aa  214  8e-55  Thermobifida fusca YX  Bacteria  normal  0.88397  n/a   
 
 
-
 
NC_013595  Sros_5304  response regulator receiver protein  55.91 
 
 
220 aa  213  9.999999999999999e-55  Streptosporangium roseum DSM 43021  Bacteria  normal  0.128918  normal 
 
 
-
 
NC_013093  Amir_7009  two component transcriptional regulator, LuxR family  52.97 
 
 
218 aa  213  1.9999999999999998e-54  Actinosynnema mirum DSM 43827  Bacteria  normal  0.0896567  n/a   
 
 
-
 
NC_014165  Tbis_0951  LuxR family two component transcriptional regulator  52.02 
 
 
221 aa  212  2.9999999999999995e-54  Thermobispora bispora DSM 43833  Bacteria  normal  0.392411  normal  0.343359 
 
 
-
 
NC_013595  Sros_3251  response regulator receiver protein  51.36 
 
 
221 aa  212  2.9999999999999995e-54  Streptosporangium roseum DSM 43021  Bacteria  normal  0.0793449  normal 
 
 
-
 
NC_013131  Caci_7105  two component transcriptional regulator, LuxR family  52.65 
 
 
241 aa  211  7.999999999999999e-54  Catenulispora acidiphila DSM 44928  Bacteria  normal  0.106023  normal  0.469545 
 
 
-
 
NC_013595  Sros_5905  response regulator receiver protein  53.57 
 
 
227 aa  210  1e-53  Streptosporangium roseum DSM 43021  Bacteria  normal  0.0252894  normal  0.145246 
 
 
-
 
NC_008699  Noca_1020  response regulator receiver  54.5 
 
 
218 aa  211  1e-53  Nocardioides sp. JS614  Bacteria  normal  0.648692  n/a   
 
 
-
 
NC_009664  Krad_2658  two component transcriptional regulator, LuxR family  54.84 
 
 
215 aa  209  2e-53  Kineococcus radiotolerans SRS30216  Bacteria  normal  normal 
 
 
-
 
NC_013093  Amir_4051  two component transcriptional regulator, LuxR family  50.92 
 
 
225 aa  208  5e-53  Actinosynnema mirum DSM 43827  Bacteria  decreased coverage  0.00308286  n/a   
 
 
-
 
NC_013510  Tcur_2302  two component transcriptional regulator, LuxR family  54.05 
 
 
226 aa  207  8e-53  Thermomonospora curvata DSM 43183  Bacteria  normal  0.0191252  n/a   
 
 
-
 
NC_013739  Cwoe_0356  two component transcriptional regulator, LuxR family  52.49 
 
 
220 aa  207  8e-53  Conexibacter woesei DSM 14684  Bacteria  normal  0.165726  normal  0.0985551 
 
 
-
 
NC_013595  Sros_7301  response regulator receiver protein  52.25 
 
 
220 aa  206  2e-52  Streptosporangium roseum DSM 43021  Bacteria  normal  normal 
 
 
-
 
NC_013521  Sked_19740  response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain  53.92 
 
 
216 aa  206  2e-52  Sanguibacter keddieii DSM 10542  Bacteria  normal  0.682926  normal 
 
 
-
 
NC_013947  Snas_4479  two component transcriptional regulator, LuxR family  51.83 
 
 
224 aa  206  3e-52  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.518456  normal  0.598935 
 
 
-
 
NC_007777  Francci3_0303  two component LuxR family transcriptional regulator  53.49 
 
 
214 aa  206  3e-52  Frankia sp. CcI3  Bacteria  normal  normal 
 
 
-
 
NC_013510  Tcur_4491  two component transcriptional regulator, LuxR family  52.07 
 
 
225 aa  205  4e-52  Thermomonospora curvata DSM 43183  Bacteria  normal  n/a   
 
 
-
 
NC_013530  Xcel_2601  two component transcriptional regulator, LuxR family  50.89 
 
 
234 aa  202  3e-51  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  0.1212  n/a   
 
 
-
 
NC_013172  Bfae_20460  response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain  50.92 
 
 
229 aa  202  3e-51  Brachybacterium faecium DSM 4810  Bacteria  normal  0.0212792  n/a   
 
 
-
 
NC_009664  Krad_4217  two component transcriptional regulator, LuxR family  55.91 
 
 
225 aa  201  5e-51  Kineococcus radiotolerans SRS30216  Bacteria  decreased coverage  0.000816589  normal  0.757819 
 
 
-
 
NC_013595  Sros_3244  response regulator receiver protein  51.36 
 
 
218 aa  200  9.999999999999999e-51  Streptosporangium roseum DSM 43021  Bacteria  hitchhiker  0.000568428  normal  0.332742 
 
 
-
 
NC_013739  Cwoe_1616  two component transcriptional regulator, LuxR family  50.86 
 
 
229 aa  199  1.9999999999999998e-50  Conexibacter woesei DSM 14684  Bacteria  normal  normal 
 
 
-
 
NC_013204  Elen_2822  two component transcriptional regulator, LuxR family  52.27 
 
 
228 aa  199  3e-50  Eggerthella lenta DSM 2243  Bacteria  normal  0.0415698  normal  0.590713 
 
 
-
 
NC_009921  Franean1_3185  two component LuxR family transcriptional regulator  52.04 
 
 
223 aa  199  3e-50  Frankia sp. EAN1pec  Bacteria  normal  0.704721  normal 
 
 
-
 
NC_009953  Sare_1782  two component LuxR family transcriptional regulator  51.83 
 
 
230 aa  199  3e-50  Salinispora arenicola CNS-205  Bacteria  normal  hitchhiker  0.0025253 
 
 
-
 
NC_013595  Sros_4468  response regulator receiver protein  53.02 
 
 
219 aa  198  3.9999999999999996e-50  Streptosporangium roseum DSM 43021  Bacteria  normal  0.0876299  normal  0.32237 
 
 
-
 
NC_013131  Caci_6963  two component transcriptional regulator, LuxR family  50.89 
 
 
225 aa  198  5e-50  Catenulispora acidiphila DSM 44928  Bacteria  normal  0.029709  normal 
 
 
-
 
NC_013521  Sked_08490  response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain  52.23 
 
 
236 aa  198  6e-50  Sanguibacter keddieii DSM 10542  Bacteria  normal  0.199706  normal  0.526513 
 
 
-
 
NC_013170  Ccur_01320  response regulator containing a CheY-like receiver domain protein and an HTH DNA-binding domain protein  50.45 
 
 
261 aa  198  6e-50  Cryptobacterium curtum DSM 15641  Bacteria  normal  normal 
 
 
-
 
NC_013093  Amir_2232  two component transcriptional regulator, LuxR family  54.21 
 
 
302 aa  197  7e-50  Actinosynnema mirum DSM 43827  Bacteria  normal  0.501029  n/a   
 
 
-
 
NC_012669  Bcav_1731  two component transcriptional regulator, LuxR family  51.87 
 
 
224 aa  198  7e-50  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.550315  normal 
 
 
-
 
NC_009380  Strop_1796  response regulator receiver  50.46 
 
 
230 aa  197  7.999999999999999e-50  Salinispora tropica CNB-440  Bacteria  normal  normal 
 
 
-
 
NC_013131  Caci_8412  two component transcriptional regulator, LuxR family  50 
 
 
239 aa  197  7.999999999999999e-50  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal 
 
 
-
 
NC_013947  Snas_4575  two component transcriptional regulator, LuxR family  52.7 
 
 
224 aa  197  1.0000000000000001e-49  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.703378  normal  0.112036 
 
 
-
 
NC_009664  Krad_1350  two component transcriptional regulator, LuxR family  50.86 
 
 
249 aa  197  1.0000000000000001e-49  Kineococcus radiotolerans SRS30216  Bacteria  normal  0.691965  normal 
 
 
-
 
NC_013169  Ksed_04500  response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain  49.78 
 
 
244 aa  197  1.0000000000000001e-49  Kytococcus sedentarius DSM 20547  Bacteria  normal  normal 
 
 
-
 
NC_009664  Krad_1198  two component transcriptional regulator, LuxR family  50.23 
 
 
225 aa  196  2.0000000000000003e-49  Kineococcus radiotolerans SRS30216  Bacteria  normal  0.109916  normal  0.0247339 
 
 
-
 
NC_013131  Caci_0683  two component transcriptional regulator, LuxR family  51.74 
 
 
234 aa  196  2.0000000000000003e-49  Catenulispora acidiphila DSM 44928  Bacteria  normal  0.344925  normal 
 
 
-
 
NC_010816  BLD_0671  putative response regulator  45.23 
 
 
248 aa  196  2.0000000000000003e-49  Bifidobacterium longum DJO10A  Bacteria  normal  0.248332  n/a   
 
 
-
 
NC_013131  Caci_7415  two component transcriptional regulator, LuxR family  52.07 
 
 
228 aa  196  3e-49  Catenulispora acidiphila DSM 44928  Bacteria  normal  0.933403  normal 
 
 
-
 
NC_013721  HMPREF0424_0644  response regulator receiver domain protein  41.04 
 
 
261 aa  195  4.0000000000000005e-49  Gardnerella vaginalis 409-05  Bacteria  n/a    normal  0.520039 
 
 
-
 
NC_013131  Caci_0956  two component transcriptional regulator, LuxR family  51.36 
 
 
221 aa  195  4.0000000000000005e-49  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal 
 
 
-
 
NC_012669  Bcav_2822  two component transcriptional regulator, LuxR family  47.95 
 
 
231 aa  195  4.0000000000000005e-49  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.311075  normal 
 
 
-
 
NC_013530  Xcel_1619  two component transcriptional regulator, LuxR family  51.83 
 
 
234 aa  195  6e-49  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  n/a   
 
 
-
 
NC_009921  Franean1_6511  two component LuxR family transcriptional regulator  51.4 
 
 
215 aa  195  6e-49  Frankia sp. EAN1pec  Bacteria  normal  normal  0.100644 
 
 
-
 
NC_013159  Svir_26840  response regulator containing a CheY-like receiver domain protein and an HTH DNA-binding domain protein  49.11 
 
 
239 aa  194  6e-49  Saccharomonospora viridis DSM 43017  Bacteria  normal  0.274056  normal  0.228776 
 
 
-
 
NC_008697  Noca_4902  response regulator receiver  52.27 
 
 
216 aa  194  7e-49  Nocardioides sp. JS614  Bacteria  normal  0.443208  normal  0.676579 
 
 
-
 
NC_014210  Ndas_1477  two component transcriptional regulator, LuxR family  52.44 
 
 
234 aa  194  7e-49  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  0.594471  normal 
 
 
-
 
NC_009953  Sare_4860  two component LuxR family transcriptional regulator  52.02 
 
 
219 aa  193  1e-48  Salinispora arenicola CNS-205  Bacteria  normal  0.452521  normal  0.0798716 
 
 
-
 
NC_013739  Cwoe_3768  two component transcriptional regulator, LuxR family  52.44 
 
 
223 aa  193  1e-48  Conexibacter woesei DSM 14684  Bacteria  normal  0.28303  normal  0.763501 
 
 
-
 
NC_013521  Sked_37860  response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain  54.5 
 
 
221 aa  193  2e-48  Sanguibacter keddieii DSM 10542  Bacteria  normal  normal 
 
 
-
 
NC_013530  Xcel_1633  two component transcriptional regulator, LuxR family  53.02 
 
 
241 aa  193  2e-48  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  0.457155  n/a   
 
 
-
 
NC_013521  Sked_03540  response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain  52.21 
 
 
226 aa  193  2e-48  Sanguibacter keddieii DSM 10542  Bacteria  normal  normal 
 
 
-
 
NC_013739  Cwoe_0549  two component transcriptional regulator, LuxR family  50.68 
 
 
220 aa  192  3e-48  Conexibacter woesei DSM 14684  Bacteria  normal  normal 
 
 
-
 
NC_014151  Cfla_0278  two component transcriptional regulator, LuxR family  48.85 
 
 
225 aa  192  4e-48  Cellulomonas flavigena DSM 20109  Bacteria  normal  hitchhiker  0.000789071 
 
 
-
 
NC_014151  Cfla_2391  two component transcriptional regulator, LuxR family  51.08 
 
 
239 aa  192  4e-48  Cellulomonas flavigena DSM 20109  Bacteria  normal  0.0696687  hitchhiker  0.00128542 
 
 
-
 
NC_012669  Bcav_1049  two component transcriptional regulator, LuxR family  50.23 
 
 
222 aa  192  4e-48  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.661499  normal  0.245945 
 
 
-
 
NC_013947  Snas_5644  two component transcriptional regulator, LuxR family  51.35 
 
 
225 aa  192  5e-48  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  normal  0.114252 
 
 
-
 
NC_011886  Achl_2270  two component transcriptional regulator, LuxR family  49.34 
 
 
242 aa  192  5e-48  Arthrobacter chlorophenolicus A6  Bacteria  n/a    hitchhiker  0.000000000113212 
 
 
-
 
NC_014210  Ndas_4857  two component transcriptional regulator, LuxR family  47.41 
 
 
234 aa  191  6e-48  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  normal  0.243741 
 
 
-
 
NC_012669  Bcav_2710  two component transcriptional regulator, LuxR family  51.85 
 
 
230 aa  191  7e-48  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.248821  normal  0.606697 
 
 
-
 
NC_009664  Krad_2599  two component transcriptional regulator, LuxR family  51.42 
 
 
211 aa  191  8e-48  Kineococcus radiotolerans SRS30216  Bacteria  normal  normal 
 
 
-
 
NC_013174  Jden_1873  two component transcriptional regulator, LuxR family  48.67 
 
 
233 aa  191  1e-47  Jonesia denitrificans DSM 20603  Bacteria  normal  0.145213  normal  0.385799 
 
 
-
 
NC_013947  Snas_3359  two component transcriptional regulator, LuxR family  51.39 
 
 
219 aa  190  1e-47  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.0172663  normal 
 
 
-
 
NC_012803  Mlut_21900  response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain  50.45 
 
 
230 aa  191  1e-47  Micrococcus luteus NCTC 2665  Bacteria  hitchhiker  0.00486265  n/a   
 
 
-
 
Page 1 of 3    << first  < prev  1  2  3    next >  last >>