More than 300 homologs were found in PanDaTox collection
for query gene Snas_3287 on replicon NC_013947
Organism: Stackebrandtia nassauensis DSM 44728



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_013947  Snas_3287  two component transcriptional regulator, LuxR family  100 
 
 
233 aa  459  9.999999999999999e-129  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.0842926  normal  0.330639 
 
 
-
 
NC_013595  Sros_4508  response regulator receiver protein  70.97 
 
 
219 aa  298  5e-80  Streptosporangium roseum DSM 43021  Bacteria  normal  0.401356  normal  0.568133 
 
 
-
 
NC_013947  Snas_0645  two component transcriptional regulator, LuxR family  64.98 
 
 
220 aa  278  6e-74  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.691779  normal 
 
 
-
 
NC_013947  Snas_4662  two component transcriptional regulator, LuxR family  63.13 
 
 
221 aa  274  8e-73  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.142047  hitchhiker  0.00679998 
 
 
-
 
NC_013947  Snas_2037  two component transcriptional regulator, LuxR family  59.73 
 
 
225 aa  260  2e-68  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  normal  0.137578 
 
 
-
 
NC_012669  Bcav_0102  two component transcriptional regulator, LuxR family  57.34 
 
 
221 aa  255  5e-67  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.0637251  normal 
 
 
-
 
NC_013510  Tcur_0110  two component transcriptional regulator, LuxR family  59.17 
 
 
222 aa  254  6e-67  Thermomonospora curvata DSM 43183  Bacteria  normal  n/a   
 
 
-
 
NC_013947  Snas_4946  two component transcriptional regulator, LuxR family  57.34 
 
 
224 aa  254  7e-67  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.13115  normal 
 
 
-
 
NC_007333  Tfu_0767  LuxR response regulator receiver  59.63 
 
 
221 aa  254  1.0000000000000001e-66  Thermobifida fusca YX  Bacteria  normal  0.88397  n/a   
 
 
-
 
NC_014210  Ndas_3601  two component transcriptional regulator, LuxR family  58.56 
 
 
222 aa  246  2e-64  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  0.324048  normal 
 
 
-
 
NC_013595  Sros_8793  response regulator receiver protein  55.5 
 
 
221 aa  246  2e-64  Streptosporangium roseum DSM 43021  Bacteria  normal  0.321987  normal 
 
 
-
 
NC_013131  Caci_1951  two component transcriptional regulator, LuxR family  56.36 
 
 
226 aa  241  7e-63  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal  0.0924411 
 
 
-
 
NC_013441  Gbro_4119  response regulator receiver  57.01 
 
 
230 aa  240  1e-62  Gordonia bronchialis DSM 43247  Bacteria  normal  n/a   
 
 
-
 
NC_013595  Sros_1523  response regulator receiver protein  55.96 
 
 
215 aa  239  2e-62  Streptosporangium roseum DSM 43021  Bacteria  normal  0.894169  normal  0.0152488 
 
 
-
 
NC_009921  Franean1_4684  two component LuxR family transcriptional regulator  55.56 
 
 
223 aa  239  2.9999999999999997e-62  Frankia sp. EAN1pec  Bacteria  normal  0.51425  normal 
 
 
-
 
NC_013131  Caci_6049  two component transcriptional regulator, LuxR family  57.01 
 
 
224 aa  239  2.9999999999999997e-62  Catenulispora acidiphila DSM 44928  Bacteria  normal  0.764436  normal 
 
 
-
 
NC_014210  Ndas_1972  two component transcriptional regulator, LuxR family  54.21 
 
 
217 aa  236  3e-61  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  unclonable  0.0000000794288  unclonable  0.0000000332591 
 
 
-
 
NC_013947  Snas_1740  two component transcriptional regulator, LuxR family  53.12 
 
 
228 aa  236  3e-61  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  normal 
 
 
-
 
NC_013757  Gobs_2015  two component transcriptional regulator, LuxR family  53.74 
 
 
232 aa  236  3e-61  Geodermatophilus obscurus DSM 43160  Bacteria  normal  0.706703  n/a   
 
 
-
 
NC_013739  Cwoe_4855  two component transcriptional regulator, LuxR family  54.74 
 
 
244 aa  233  2.0000000000000002e-60  Conexibacter woesei DSM 14684  Bacteria  normal  0.093919  normal 
 
 
-
 
NC_009921  Franean1_3390  two component LuxR family transcriptional regulator  55.5 
 
 
226 aa  231  7.000000000000001e-60  Frankia sp. EAN1pec  Bacteria  normal  0.0389848  normal 
 
 
-
 
NC_013947  Snas_5265  two component transcriptional regulator, LuxR family  53.92 
 
 
218 aa  229  3e-59  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  normal 
 
 
-
 
NC_013093  Amir_4511  two component transcriptional regulator, LuxR family  53.88 
 
 
226 aa  228  4e-59  Actinosynnema mirum DSM 43827  Bacteria  normal  0.11054  n/a   
 
 
-
 
NC_013093  Amir_6405  two component transcriptional regulator, LuxR family  53.64 
 
 
225 aa  227  1e-58  Actinosynnema mirum DSM 43827  Bacteria  normal  n/a   
 
 
-
 
NC_013170  Ccur_01320  response regulator containing a CheY-like receiver domain protein and an HTH DNA-binding domain protein  54.13 
 
 
261 aa  226  2e-58  Cryptobacterium curtum DSM 15641  Bacteria  normal  normal 
 
 
-
 
NC_012669  Bcav_4002  two component transcriptional regulator, LuxR family  54.71 
 
 
222 aa  225  4e-58  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.947887  normal  0.770727 
 
 
-
 
NC_013595  Sros_5619  response regulator receiver protein  51.85 
 
 
226 aa  223  3e-57  Streptosporangium roseum DSM 43021  Bacteria  normal  0.0556461  normal  0.802866 
 
 
-
 
NC_009921  Franean1_6511  two component LuxR family transcriptional regulator  53.27 
 
 
215 aa  222  3e-57  Frankia sp. EAN1pec  Bacteria  normal  normal  0.100644 
 
 
-
 
NC_013947  Snas_2557  two component transcriptional regulator, LuxR family  50.9 
 
 
224 aa  221  4.9999999999999996e-57  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.231398  normal  0.0978001 
 
 
-
 
NC_009921  Franean1_3727  two component LuxR family transcriptional regulator  52.68 
 
 
226 aa  221  8e-57  Frankia sp. EAN1pec  Bacteria  normal  normal  0.554715 
 
 
-
 
NC_013521  Sked_36930  response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain  55.81 
 
 
222 aa  219  1.9999999999999999e-56  Sanguibacter keddieii DSM 10542  Bacteria  normal  normal  0.811978 
 
 
-
 
NC_013131  Caci_7160  two component transcriptional regulator, LuxR family  51.8 
 
 
224 aa  219  3e-56  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal 
 
 
-
 
NC_013510  Tcur_2302  two component transcriptional regulator, LuxR family  51.33 
 
 
226 aa  219  3.9999999999999997e-56  Thermomonospora curvata DSM 43183  Bacteria  normal  0.0191252  n/a   
 
 
-
 
NC_013595  Sros_8243  response regulator receiver protein  54.13 
 
 
217 aa  218  5e-56  Streptosporangium roseum DSM 43021  Bacteria  normal  0.931194  normal  0.230681 
 
 
-
 
NC_014165  Tbis_1846  LuxR family two component transcriptional regulator  51.56 
 
 
226 aa  218  5e-56  Thermobispora bispora DSM 43833  Bacteria  normal  0.699471  normal 
 
 
-
 
NC_013204  Elen_2822  two component transcriptional regulator, LuxR family  55.41 
 
 
228 aa  218  6e-56  Eggerthella lenta DSM 2243  Bacteria  normal  0.0415698  normal  0.590713 
 
 
-
 
NC_008697  Noca_4902  response regulator receiver  52.97 
 
 
216 aa  218  7.999999999999999e-56  Nocardioides sp. JS614  Bacteria  normal  0.443208  normal  0.676579 
 
 
-
 
NC_007777  Francci3_0303  two component LuxR family transcriptional regulator  52.09 
 
 
214 aa  217  1e-55  Frankia sp. CcI3  Bacteria  normal  normal 
 
 
-
 
NC_013131  Caci_7105  two component transcriptional regulator, LuxR family  53.36 
 
 
241 aa  216  2e-55  Catenulispora acidiphila DSM 44928  Bacteria  normal  0.106023  normal  0.469545 
 
 
-
 
NC_013530  Xcel_1618  two component transcriptional regulator, LuxR family  53.92 
 
 
220 aa  216  2.9999999999999998e-55  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  n/a   
 
 
-
 
NC_014210  Ndas_2087  two component transcriptional regulator, LuxR family  52.97 
 
 
247 aa  214  7e-55  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  0.73112  normal 
 
 
-
 
NC_013235  Namu_3387  two component transcriptional regulator, LuxR family  51.82 
 
 
223 aa  213  1.9999999999999998e-54  Nakamurella multipartita DSM 44233  Bacteria  hitchhiker  0.0000386408  hitchhiker  0.000570848 
 
 
-
 
NC_013093  Amir_6235  two component transcriptional regulator, LuxR family  52.51 
 
 
215 aa  213  1.9999999999999998e-54  Actinosynnema mirum DSM 43827  Bacteria  normal  0.502704  n/a   
 
 
-
 
NC_013947  Snas_1509  two component transcriptional regulator, LuxR family  51.6 
 
 
221 aa  210  1e-53  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.198395  normal  0.0597777 
 
 
-
 
NC_014165  Tbis_0951  LuxR family two component transcriptional regulator  49.55 
 
 
221 aa  211  1e-53  Thermobispora bispora DSM 43833  Bacteria  normal  0.392411  normal  0.343359 
 
 
-
 
NC_013947  Snas_1903  two component transcriptional regulator, LuxR family  52.51 
 
 
225 aa  210  2e-53  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.202425  normal  0.182857 
 
 
-
 
NC_013947  Snas_4479  two component transcriptional regulator, LuxR family  51.14 
 
 
224 aa  209  3e-53  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.518456  normal  0.598935 
 
 
-
 
NC_009921  Franean1_3185  two component LuxR family transcriptional regulator  49.55 
 
 
223 aa  208  6e-53  Frankia sp. EAN1pec  Bacteria  normal  0.704721  normal 
 
 
-
 
NC_013739  Cwoe_1616  two component transcriptional regulator, LuxR family  48.23 
 
 
229 aa  208  7e-53  Conexibacter woesei DSM 14684  Bacteria  normal  normal 
 
 
-
 
NC_013131  Caci_3748  two component transcriptional regulator, LuxR family  51.38 
 
 
236 aa  207  1e-52  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal 
 
 
-
 
NC_013595  Sros_5905  response regulator receiver protein  48.65 
 
 
227 aa  207  2e-52  Streptosporangium roseum DSM 43021  Bacteria  normal  0.0252894  normal  0.145246 
 
 
-
 
NC_013172  Bfae_20460  response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain  47.95 
 
 
229 aa  206  3e-52  Brachybacterium faecium DSM 4810  Bacteria  normal  0.0212792  n/a   
 
 
-
 
NC_011886  Achl_3912  two component transcriptional regulator, LuxR family  49.78 
 
 
230 aa  206  3e-52  Arthrobacter chlorophenolicus A6  Bacteria  n/a    normal 
 
 
-
 
NC_009664  Krad_1198  two component transcriptional regulator, LuxR family  48.62 
 
 
225 aa  205  5e-52  Kineococcus radiotolerans SRS30216  Bacteria  normal  0.109916  normal  0.0247339 
 
 
-
 
NC_013093  Amir_7009  two component transcriptional regulator, LuxR family  47.27 
 
 
218 aa  204  9e-52  Actinosynnema mirum DSM 43827  Bacteria  normal  0.0896567  n/a   
 
 
-
 
NC_013131  Caci_0956  two component transcriptional regulator, LuxR family  50.91 
 
 
221 aa  204  9e-52  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal 
 
 
-
 
NC_013510  Tcur_4491  two component transcriptional regulator, LuxR family  50.22 
 
 
225 aa  204  1e-51  Thermomonospora curvata DSM 43183  Bacteria  normal  n/a   
 
 
-
 
NC_012669  Bcav_1049  two component transcriptional regulator, LuxR family  50.89 
 
 
222 aa  203  1e-51  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.661499  normal  0.245945 
 
 
-
 
NC_009921  Franean1_7161  two component LuxR family transcriptional regulator  52.27 
 
 
225 aa  202  3e-51  Frankia sp. EAN1pec  Bacteria  normal  0.0588186  normal  0.118819 
 
 
-
 
NC_013172  Bfae_11600  response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain  48.86 
 
 
225 aa  202  3e-51  Brachybacterium faecium DSM 4810  Bacteria  decreased coverage  0.00120804  n/a   
 
 
-
 
NC_008699  Noca_3643  two component LuxR family transcriptional regulator  51.39 
 
 
215 aa  202  5e-51  Nocardioides sp. JS614  Bacteria  normal  0.516516  n/a   
 
 
-
 
NC_013595  Sros_5304  response regulator receiver protein  50.23 
 
 
220 aa  202  5e-51  Streptosporangium roseum DSM 43021  Bacteria  normal  0.128918  normal 
 
 
-
 
NC_013595  Sros_3244  response regulator receiver protein  50.23 
 
 
218 aa  201  9e-51  Streptosporangium roseum DSM 43021  Bacteria  hitchhiker  0.000568428  normal  0.332742 
 
 
-
 
NC_013595  Sros_4577  response regulator receiver protein  49.1 
 
 
223 aa  200  1.9999999999999998e-50  Streptosporangium roseum DSM 43021  Bacteria  normal  normal  0.172592 
 
 
-
 
NC_014210  Ndas_4857  two component transcriptional regulator, LuxR family  47.64 
 
 
234 aa  199  3e-50  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  normal  0.243741 
 
 
-
 
NC_013131  Caci_6963  two component transcriptional regulator, LuxR family  48.87 
 
 
225 aa  199  3.9999999999999996e-50  Catenulispora acidiphila DSM 44928  Bacteria  normal  0.029709  normal 
 
 
-
 
NC_013530  Xcel_0239  two component transcriptional regulator, LuxR family  49.33 
 
 
230 aa  199  3.9999999999999996e-50  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  n/a   
 
 
-
 
NC_013131  Caci_8900  two component transcriptional regulator, LuxR family  52.31 
 
 
221 aa  199  3.9999999999999996e-50  Catenulispora acidiphila DSM 44928  Bacteria  normal  0.967084  normal 
 
 
-
 
NC_012669  Bcav_1731  two component transcriptional regulator, LuxR family  48.13 
 
 
224 aa  199  3.9999999999999996e-50  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.550315  normal 
 
 
-
 
NC_013093  Amir_2737  two component transcriptional regulator, LuxR family  47.51 
 
 
227 aa  198  5e-50  Actinosynnema mirum DSM 43827  Bacteria  normal  0.418014  n/a   
 
 
-
 
NC_013947  Snas_5644  two component transcriptional regulator, LuxR family  49.78 
 
 
225 aa  198  5e-50  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  normal  0.114252 
 
 
-
 
NC_013131  Caci_7812  two component transcriptional regulator, LuxR family  48 
 
 
227 aa  198  6e-50  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal 
 
 
-
 
NC_013521  Sked_08490  response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain  46.46 
 
 
236 aa  198  6e-50  Sanguibacter keddieii DSM 10542  Bacteria  normal  0.199706  normal  0.526513 
 
 
-
 
NC_008541  Arth_4134  two component LuxR family transcriptional regulator  45.68 
 
 
250 aa  198  6e-50  Arthrobacter sp. FB24  Bacteria  normal  n/a   
 
 
-
 
NC_013739  Cwoe_0356  two component transcriptional regulator, LuxR family  50 
 
 
220 aa  198  6e-50  Conexibacter woesei DSM 14684  Bacteria  normal  0.165726  normal  0.0985551 
 
 
-
 
NC_009953  Sare_1782  two component LuxR family transcriptional regulator  48.87 
 
 
230 aa  198  7e-50  Salinispora arenicola CNS-205  Bacteria  normal  hitchhiker  0.0025253 
 
 
-
 
NC_013093  Amir_2232  two component transcriptional regulator, LuxR family  50.69 
 
 
302 aa  197  1.0000000000000001e-49  Actinosynnema mirum DSM 43827  Bacteria  normal  0.501029  n/a   
 
 
-
 
NC_013595  Sros_9329  response regulator receiver protein  50.23 
 
 
217 aa  197  1.0000000000000001e-49  Streptosporangium roseum DSM 43021  Bacteria  normal  normal 
 
 
-
 
NC_009921  Franean1_7117  two component LuxR family transcriptional regulator  50 
 
 
214 aa  197  1.0000000000000001e-49  Frankia sp. EAN1pec  Bacteria  normal  normal 
 
 
-
 
NC_013131  Caci_1616  two component transcriptional regulator, LuxR family  48.02 
 
 
226 aa  197  1.0000000000000001e-49  Catenulispora acidiphila DSM 44928  Bacteria  normal  0.0231149  normal  0.0629914 
 
 
-
 
NC_013521  Sked_37860  response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain  50.45 
 
 
221 aa  196  2.0000000000000003e-49  Sanguibacter keddieii DSM 10542  Bacteria  normal  normal 
 
 
-
 
NC_013131  Caci_0683  two component transcriptional regulator, LuxR family  46.05 
 
 
234 aa  196  2.0000000000000003e-49  Catenulispora acidiphila DSM 44928  Bacteria  normal  0.344925  normal 
 
 
-
 
NC_013159  Svir_26840  response regulator containing a CheY-like receiver domain protein and an HTH DNA-binding domain protein  46.08 
 
 
239 aa  195  5.000000000000001e-49  Saccharomonospora viridis DSM 43017  Bacteria  normal  0.274056  normal  0.228776 
 
 
-
 
NC_009664  Krad_4217  two component transcriptional regulator, LuxR family  46.61 
 
 
225 aa  194  9e-49  Kineococcus radiotolerans SRS30216  Bacteria  decreased coverage  0.000816589  normal  0.757819 
 
 
-
 
NC_013510  Tcur_1300  two component transcriptional regulator, LuxR family  48.6 
 
 
215 aa  194  1e-48  Thermomonospora curvata DSM 43183  Bacteria  normal  0.145336  n/a   
 
 
-
 
NC_013947  Snas_4575  two component transcriptional regulator, LuxR family  50.22 
 
 
224 aa  193  2e-48  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.703378  normal  0.112036 
 
 
-
 
NC_013947  Snas_2469  two component transcriptional regulator, LuxR family  48.13 
 
 
214 aa  193  2e-48  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.126163  normal 
 
 
-
 
NC_009380  Strop_1796  response regulator receiver  46.82 
 
 
230 aa  193  2e-48  Salinispora tropica CNB-440  Bacteria  normal  normal 
 
 
-
 
NC_009664  Krad_1981  two component transcriptional regulator, LuxR family  45.61 
 
 
230 aa  192  3e-48  Kineococcus radiotolerans SRS30216  Bacteria  normal  normal 
 
 
-
 
NC_013595  Sros_1746  response regulator receiver protein  50.23 
 
 
217 aa  192  5e-48  Streptosporangium roseum DSM 43021  Bacteria  normal  0.59096  normal  0.157721 
 
 
-
 
NC_013093  Amir_4051  two component transcriptional regulator, LuxR family  47.75 
 
 
225 aa  191  6e-48  Actinosynnema mirum DSM 43827  Bacteria  decreased coverage  0.00308286  n/a   
 
 
-
 
NC_008699  Noca_1020  response regulator receiver  48.62 
 
 
218 aa  191  8e-48  Nocardioides sp. JS614  Bacteria  normal  0.648692  n/a   
 
 
-
 
NC_009664  Krad_1350  two component transcriptional regulator, LuxR family  47.83 
 
 
249 aa  190  1e-47  Kineococcus radiotolerans SRS30216  Bacteria  normal  0.691965  normal 
 
 
-
 
NC_012669  Bcav_2822  two component transcriptional regulator, LuxR family  47.06 
 
 
231 aa  191  1e-47  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.311075  normal 
 
 
-
 
NC_013739  Cwoe_4937  two component transcriptional regulator, LuxR family  47.49 
 
 
224 aa  189  2.9999999999999997e-47  Conexibacter woesei DSM 14684  Bacteria  normal  0.570807  normal  0.210467 
 
 
-
 
NC_013131  Caci_7843  two component transcriptional regulator, LuxR family  46.15 
 
 
231 aa  189  5e-47  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal  0.176081 
 
 
-
 
NC_013093  Amir_4260  two component transcriptional regulator, LuxR family  46.79 
 
 
217 aa  188  5.999999999999999e-47  Actinosynnema mirum DSM 43827  Bacteria  normal  n/a   
 
 
-
 
NC_013739  Cwoe_0549  two component transcriptional regulator, LuxR family  45.83 
 
 
220 aa  187  9e-47  Conexibacter woesei DSM 14684  Bacteria  normal  normal 
 
 
-
 
NC_013595  Sros_4468  response regulator receiver protein  46.33 
 
 
219 aa  187  9e-47  Streptosporangium roseum DSM 43021  Bacteria  normal  0.0876299  normal  0.32237 
 
 
-
 
NC_011886  Achl_2270  two component transcriptional regulator, LuxR family  45.41 
 
 
242 aa  187  9e-47  Arthrobacter chlorophenolicus A6  Bacteria  n/a    hitchhiker  0.000000000113212 
 
 
-
 
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