More than 300 homologs were found in PanDaTox collection
for query gene Franean1_3390 on replicon NC_009921
Organism: Frankia sp. EAN1pec



Page 1 of 3    << first  < prev  1  2  3    next >  last >>   


Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_009921  Franean1_3390  two component LuxR family transcriptional regulator  100 
 
 
226 aa  444  1.0000000000000001e-124  Frankia sp. EAN1pec  Bacteria  normal  0.0389848  normal 
 
 
-
 
NC_009921  Franean1_3727  two component LuxR family transcriptional regulator  87.17 
 
 
226 aa  390  1e-107  Frankia sp. EAN1pec  Bacteria  normal  normal  0.554715 
 
 
-
 
NC_013131  Caci_1951  two component transcriptional regulator, LuxR family  64.38 
 
 
226 aa  261  4e-69  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal  0.0924411 
 
 
-
 
NC_013131  Caci_7160  two component transcriptional regulator, LuxR family  65 
 
 
224 aa  261  4.999999999999999e-69  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal 
 
 
-
 
NC_009921  Franean1_4684  two component LuxR family transcriptional regulator  63.18 
 
 
223 aa  261  4.999999999999999e-69  Frankia sp. EAN1pec  Bacteria  normal  0.51425  normal 
 
 
-
 
NC_013757  Gobs_2015  two component transcriptional regulator, LuxR family  61.95 
 
 
232 aa  258  7e-68  Geodermatophilus obscurus DSM 43160  Bacteria  normal  0.706703  n/a   
 
 
-
 
NC_013521  Sked_36930  response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain  62.1 
 
 
222 aa  253  1.0000000000000001e-66  Sanguibacter keddieii DSM 10542  Bacteria  normal  normal  0.811978 
 
 
-
 
NC_013131  Caci_3748  two component transcriptional regulator, LuxR family  62.33 
 
 
236 aa  252  4.0000000000000004e-66  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal 
 
 
-
 
NC_013093  Amir_6405  two component transcriptional regulator, LuxR family  59.73 
 
 
225 aa  250  2e-65  Actinosynnema mirum DSM 43827  Bacteria  normal  n/a   
 
 
-
 
NC_013235  Namu_3387  two component transcriptional regulator, LuxR family  59.73 
 
 
223 aa  249  3e-65  Nakamurella multipartita DSM 44233  Bacteria  hitchhiker  0.0000386408  hitchhiker  0.000570848 
 
 
-
 
NC_013947  Snas_4946  two component transcriptional regulator, LuxR family  59.82 
 
 
224 aa  245  4e-64  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.13115  normal 
 
 
-
 
NC_009921  Franean1_7117  two component LuxR family transcriptional regulator  59.91 
 
 
214 aa  244  4.9999999999999997e-64  Frankia sp. EAN1pec  Bacteria  normal  normal 
 
 
-
 
NC_014210  Ndas_3601  two component transcriptional regulator, LuxR family  61.47 
 
 
222 aa  243  9.999999999999999e-64  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  0.324048  normal 
 
 
-
 
NC_013093  Amir_4511  two component transcriptional regulator, LuxR family  60.44 
 
 
226 aa  242  3e-63  Actinosynnema mirum DSM 43827  Bacteria  normal  0.11054  n/a   
 
 
-
 
NC_014210  Ndas_1972  two component transcriptional regulator, LuxR family  56.56 
 
 
217 aa  237  1e-61  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  unclonable  0.0000000794288  unclonable  0.0000000332591 
 
 
-
 
NC_013530  Xcel_1618  two component transcriptional regulator, LuxR family  57.99 
 
 
220 aa  234  1.0000000000000001e-60  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  n/a   
 
 
-
 
NC_013595  Sros_5619  response regulator receiver protein  55.51 
 
 
226 aa  233  2.0000000000000002e-60  Streptosporangium roseum DSM 43021  Bacteria  normal  0.0556461  normal  0.802866 
 
 
-
 
NC_013739  Cwoe_4855  two component transcriptional regulator, LuxR family  59.39 
 
 
244 aa  231  5e-60  Conexibacter woesei DSM 14684  Bacteria  normal  0.093919  normal 
 
 
-
 
NC_013441  Gbro_4119  response regulator receiver  57.53 
 
 
230 aa  231  6e-60  Gordonia bronchialis DSM 43247  Bacteria  normal  n/a   
 
 
-
 
NC_013947  Snas_3287  two component transcriptional regulator, LuxR family  55.5 
 
 
233 aa  231  7.000000000000001e-60  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.0842926  normal  0.330639 
 
 
-
 
NC_013947  Snas_1740  two component transcriptional regulator, LuxR family  54.71 
 
 
228 aa  229  2e-59  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  normal 
 
 
-
 
NC_013510  Tcur_0110  two component transcriptional regulator, LuxR family  57.99 
 
 
222 aa  228  5e-59  Thermomonospora curvata DSM 43183  Bacteria  normal  n/a   
 
 
-
 
NC_013131  Caci_6049  two component transcriptional regulator, LuxR family  60.53 
 
 
224 aa  227  1e-58  Catenulispora acidiphila DSM 44928  Bacteria  normal  0.764436  normal 
 
 
-
 
NC_013595  Sros_8243  response regulator receiver protein  57.92 
 
 
217 aa  227  1e-58  Streptosporangium roseum DSM 43021  Bacteria  normal  0.931194  normal  0.230681 
 
 
-
 
NC_013595  Sros_8793  response regulator receiver protein  57.01 
 
 
221 aa  226  2e-58  Streptosporangium roseum DSM 43021  Bacteria  normal  0.321987  normal 
 
 
-
 
NC_007333  Tfu_0767  LuxR response regulator receiver  56.42 
 
 
221 aa  226  3e-58  Thermobifida fusca YX  Bacteria  normal  0.88397  n/a   
 
 
-
 
NC_013595  Sros_1523  response regulator receiver protein  56.62 
 
 
215 aa  226  3e-58  Streptosporangium roseum DSM 43021  Bacteria  normal  0.894169  normal  0.0152488 
 
 
-
 
NC_013170  Ccur_01320  response regulator containing a CheY-like receiver domain protein and an HTH DNA-binding domain protein  54.02 
 
 
261 aa  224  7e-58  Cryptobacterium curtum DSM 15641  Bacteria  normal  normal 
 
 
-
 
NC_014210  Ndas_2087  two component transcriptional regulator, LuxR family  54.95 
 
 
247 aa  224  7e-58  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  0.73112  normal 
 
 
-
 
NC_009921  Franean1_3185  two component LuxR family transcriptional regulator  57.08 
 
 
223 aa  223  1e-57  Frankia sp. EAN1pec  Bacteria  normal  0.704721  normal 
 
 
-
 
NC_013947  Snas_2037  two component transcriptional regulator, LuxR family  55 
 
 
225 aa  222  3e-57  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  normal  0.137578 
 
 
-
 
NC_007777  Francci3_0303  two component LuxR family transcriptional regulator  58.26 
 
 
214 aa  222  4e-57  Frankia sp. CcI3  Bacteria  normal  normal 
 
 
-
 
NC_013595  Sros_3244  response regulator receiver protein  54.75 
 
 
218 aa  221  9.999999999999999e-57  Streptosporangium roseum DSM 43021  Bacteria  hitchhiker  0.000568428  normal  0.332742 
 
 
-
 
NC_009921  Franean1_6511  two component LuxR family transcriptional regulator  57.14 
 
 
215 aa  220  9.999999999999999e-57  Frankia sp. EAN1pec  Bacteria  normal  normal  0.100644 
 
 
-
 
NC_013595  Sros_4508  response regulator receiver protein  55.86 
 
 
219 aa  221  9.999999999999999e-57  Streptosporangium roseum DSM 43021  Bacteria  normal  0.401356  normal  0.568133 
 
 
-
 
NC_012669  Bcav_0102  two component transcriptional regulator, LuxR family  56.62 
 
 
221 aa  220  9.999999999999999e-57  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.0637251  normal 
 
 
-
 
NC_013947  Snas_0645  two component transcriptional regulator, LuxR family  55.05 
 
 
220 aa  219  1.9999999999999999e-56  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.691779  normal 
 
 
-
 
NC_013947  Snas_4662  two component transcriptional regulator, LuxR family  55.3 
 
 
221 aa  220  1.9999999999999999e-56  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.142047  hitchhiker  0.00679998 
 
 
-
 
NC_013947  Snas_2557  two component transcriptional regulator, LuxR family  54.3 
 
 
224 aa  218  3.9999999999999997e-56  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.231398  normal  0.0978001 
 
 
-
 
NC_013131  Caci_6963  two component transcriptional regulator, LuxR family  53.74 
 
 
225 aa  218  6e-56  Catenulispora acidiphila DSM 44928  Bacteria  normal  0.029709  normal 
 
 
-
 
NC_013131  Caci_7105  two component transcriptional regulator, LuxR family  53.33 
 
 
241 aa  214  5.9999999999999996e-55  Catenulispora acidiphila DSM 44928  Bacteria  normal  0.106023  normal  0.469545 
 
 
-
 
NC_014165  Tbis_1846  LuxR family two component transcriptional regulator  53.39 
 
 
226 aa  214  7e-55  Thermobispora bispora DSM 43833  Bacteria  normal  0.699471  normal 
 
 
-
 
NC_013510  Tcur_2302  two component transcriptional regulator, LuxR family  52.86 
 
 
226 aa  214  7e-55  Thermomonospora curvata DSM 43183  Bacteria  normal  0.0191252  n/a   
 
 
-
 
NC_013204  Elen_2822  two component transcriptional regulator, LuxR family  53.64 
 
 
228 aa  213  1.9999999999999998e-54  Eggerthella lenta DSM 2243  Bacteria  normal  0.0415698  normal  0.590713 
 
 
-
 
NC_013595  Sros_5905  response regulator receiver protein  53.15 
 
 
227 aa  213  2.9999999999999995e-54  Streptosporangium roseum DSM 43021  Bacteria  normal  0.0252894  normal  0.145246 
 
 
-
 
NC_013093  Amir_2232  two component transcriptional regulator, LuxR family  56.05 
 
 
302 aa  211  7e-54  Actinosynnema mirum DSM 43827  Bacteria  normal  0.501029  n/a   
 
 
-
 
NC_012669  Bcav_1731  two component transcriptional regulator, LuxR family  55.45 
 
 
224 aa  211  7.999999999999999e-54  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.550315  normal 
 
 
-
 
NC_013595  Sros_4577  response regulator receiver protein  53.85 
 
 
223 aa  208  4e-53  Streptosporangium roseum DSM 43021  Bacteria  normal  normal  0.172592 
 
 
-
 
NC_012669  Bcav_4002  two component transcriptional regulator, LuxR family  53.18 
 
 
222 aa  209  4e-53  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.947887  normal  0.770727 
 
 
-
 
NC_013947  Snas_4479  two component transcriptional regulator, LuxR family  50.67 
 
 
224 aa  208  7e-53  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.518456  normal  0.598935 
 
 
-
 
NC_013947  Snas_5265  two component transcriptional regulator, LuxR family  55.05 
 
 
218 aa  207  9e-53  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  normal 
 
 
-
 
NC_013595  Sros_3251  response regulator receiver protein  51.12 
 
 
221 aa  206  3e-52  Streptosporangium roseum DSM 43021  Bacteria  normal  0.0793449  normal 
 
 
-
 
NC_013739  Cwoe_1616  two component transcriptional regulator, LuxR family  50 
 
 
229 aa  206  3e-52  Conexibacter woesei DSM 14684  Bacteria  normal  normal 
 
 
-
 
NC_013172  Bfae_20460  response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain  50.23 
 
 
229 aa  205  5e-52  Brachybacterium faecium DSM 4810  Bacteria  normal  0.0212792  n/a   
 
 
-
 
NC_013521  Sked_37860  response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain  54.75 
 
 
221 aa  204  6e-52  Sanguibacter keddieii DSM 10542  Bacteria  normal  normal 
 
 
-
 
NC_013131  Caci_0683  two component transcriptional regulator, LuxR family  49.79 
 
 
234 aa  204  6e-52  Catenulispora acidiphila DSM 44928  Bacteria  normal  0.344925  normal 
 
 
-
 
NC_013521  Sked_08490  response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain  50.44 
 
 
236 aa  204  8e-52  Sanguibacter keddieii DSM 10542  Bacteria  normal  0.199706  normal  0.526513 
 
 
-
 
NC_008697  Noca_4902  response regulator receiver  53.88 
 
 
216 aa  204  1e-51  Nocardioides sp. JS614  Bacteria  normal  0.443208  normal  0.676579 
 
 
-
 
NC_013595  Sros_9329  response regulator receiver protein  51.12 
 
 
217 aa  204  1e-51  Streptosporangium roseum DSM 43021  Bacteria  normal  normal 
 
 
-
 
NC_014165  Tbis_0951  LuxR family two component transcriptional regulator  52.51 
 
 
221 aa  204  1e-51  Thermobispora bispora DSM 43833  Bacteria  normal  0.392411  normal  0.343359 
 
 
-
 
NC_013739  Cwoe_3768  two component transcriptional regulator, LuxR family  53.57 
 
 
223 aa  204  1e-51  Conexibacter woesei DSM 14684  Bacteria  normal  0.28303  normal  0.763501 
 
 
-
 
NC_013595  Sros_7301  response regulator receiver protein  52.94 
 
 
220 aa  203  2e-51  Streptosporangium roseum DSM 43021  Bacteria  normal  normal 
 
 
-
 
NC_013595  Sros_5304  response regulator receiver protein  52.25 
 
 
220 aa  203  2e-51  Streptosporangium roseum DSM 43021  Bacteria  normal  0.128918  normal 
 
 
-
 
NC_013739  Cwoe_0356  two component transcriptional regulator, LuxR family  53.54 
 
 
220 aa  202  3e-51  Conexibacter woesei DSM 14684  Bacteria  normal  0.165726  normal  0.0985551 
 
 
-
 
NC_013530  Xcel_1619  two component transcriptional regulator, LuxR family  50.88 
 
 
234 aa  202  3e-51  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  n/a   
 
 
-
 
NC_009921  Franean1_7161  two component LuxR family transcriptional regulator  50.88 
 
 
225 aa  202  3e-51  Frankia sp. EAN1pec  Bacteria  normal  0.0588186  normal  0.118819 
 
 
-
 
NC_012669  Bcav_1049  two component transcriptional regulator, LuxR family  53.15 
 
 
222 aa  202  3e-51  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.661499  normal  0.245945 
 
 
-
 
NC_013131  Caci_8900  two component transcriptional regulator, LuxR family  53.64 
 
 
221 aa  201  5e-51  Catenulispora acidiphila DSM 44928  Bacteria  normal  0.967084  normal 
 
 
-
 
NC_013530  Xcel_2601  two component transcriptional regulator, LuxR family  52.68 
 
 
234 aa  201  6e-51  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  0.1212  n/a   
 
 
-
 
NC_013093  Amir_6235  two component transcriptional regulator, LuxR family  52.51 
 
 
215 aa  200  9.999999999999999e-51  Actinosynnema mirum DSM 43827  Bacteria  normal  0.502704  n/a   
 
 
-
 
NC_013947  Snas_1903  two component transcriptional regulator, LuxR family  52.94 
 
 
225 aa  201  9.999999999999999e-51  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.202425  normal  0.182857 
 
 
-
 
NC_013093  Amir_7009  two component transcriptional regulator, LuxR family  51.82 
 
 
218 aa  200  9.999999999999999e-51  Actinosynnema mirum DSM 43827  Bacteria  normal  0.0896567  n/a   
 
 
-
 
NC_013174  Jden_1873  two component transcriptional regulator, LuxR family  49.78 
 
 
233 aa  199  1.9999999999999998e-50  Jonesia denitrificans DSM 20603  Bacteria  normal  0.145213  normal  0.385799 
 
 
-
 
NC_013131  Caci_7812  two component transcriptional regulator, LuxR family  51.34 
 
 
227 aa  200  1.9999999999999998e-50  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal 
 
 
-
 
NC_008699  Noca_1020  response regulator receiver  51.56 
 
 
218 aa  199  3e-50  Nocardioides sp. JS614  Bacteria  normal  0.648692  n/a   
 
 
-
 
NC_013131  Caci_1616  two component transcriptional regulator, LuxR family  52.23 
 
 
226 aa  198  6e-50  Catenulispora acidiphila DSM 44928  Bacteria  normal  0.0231149  normal  0.0629914 
 
 
-
 
NC_013441  Gbro_3238  regulatory protein LuxR  48.73 
 
 
228 aa  198  7e-50  Gordonia bronchialis DSM 43247  Bacteria  normal  n/a   
 
 
-
 
NC_009664  Krad_2599  two component transcriptional regulator, LuxR family  50.47 
 
 
211 aa  197  2.0000000000000003e-49  Kineococcus radiotolerans SRS30216  Bacteria  normal  normal 
 
 
-
 
NC_009953  Sare_4860  two component LuxR family transcriptional regulator  50.92 
 
 
219 aa  196  2.0000000000000003e-49  Salinispora arenicola CNS-205  Bacteria  normal  0.452521  normal  0.0798716 
 
 
-
 
NC_013093  Amir_4260  two component transcriptional regulator, LuxR family  52.97 
 
 
217 aa  194  6e-49  Actinosynnema mirum DSM 43827  Bacteria  normal  n/a   
 
 
-
 
NC_009664  Krad_4217  two component transcriptional regulator, LuxR family  51.6 
 
 
225 aa  195  6e-49  Kineococcus radiotolerans SRS30216  Bacteria  decreased coverage  0.000816589  normal  0.757819 
 
 
-
 
NC_013947  Snas_1509  two component transcriptional regulator, LuxR family  51.61 
 
 
221 aa  194  7e-49  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.198395  normal  0.0597777 
 
 
-
 
NC_013131  Caci_6094  two component transcriptional regulator, LuxR family  50.64 
 
 
235 aa  194  9e-49  Catenulispora acidiphila DSM 44928  Bacteria  normal  0.634688  normal  0.121163 
 
 
-
 
NC_008541  Arth_4134  two component LuxR family transcriptional regulator  45.71 
 
 
250 aa  193  1e-48  Arthrobacter sp. FB24  Bacteria  normal  n/a   
 
 
-
 
NC_009664  Krad_1198  two component transcriptional regulator, LuxR family  49.1 
 
 
225 aa  194  1e-48  Kineococcus radiotolerans SRS30216  Bacteria  normal  0.109916  normal  0.0247339 
 
 
-
 
NC_013131  Caci_7415  two component transcriptional regulator, LuxR family  50 
 
 
228 aa  194  1e-48  Catenulispora acidiphila DSM 44928  Bacteria  normal  0.933403  normal 
 
 
-
 
NC_012669  Bcav_2822  two component transcriptional regulator, LuxR family  50.68 
 
 
231 aa  194  1e-48  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.311075  normal 
 
 
-
 
NC_013131  Caci_6705  two component transcriptional regulator, LuxR family  45.45 
 
 
258 aa  193  2e-48  Catenulispora acidiphila DSM 44928  Bacteria  normal  0.318103  normal  0.0731204 
 
 
-
 
NC_009380  Strop_2458  response regulator receiver  50 
 
 
220 aa  193  2e-48  Salinispora tropica CNB-440  Bacteria  normal  0.0554598  normal 
 
 
-
 
NC_010816  BLD_0671  putative response regulator  47.11 
 
 
248 aa  193  2e-48  Bifidobacterium longum DJO10A  Bacteria  normal  0.248332  n/a   
 
 
-
 
NC_013595  Sros_4468  response regulator receiver protein  50.46 
 
 
219 aa  193  2e-48  Streptosporangium roseum DSM 43021  Bacteria  normal  0.0876299  normal  0.32237 
 
 
-
 
NC_013947  Snas_4575  two component transcriptional regulator, LuxR family  53.78 
 
 
224 aa  193  2e-48  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.703378  normal  0.112036 
 
 
-
 
NC_013947  Snas_5644  two component transcriptional regulator, LuxR family  51.58 
 
 
225 aa  192  3e-48  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  normal  0.114252 
 
 
-
 
NC_013595  Sros_1746  response regulator receiver protein  52.75 
 
 
217 aa  192  4e-48  Streptosporangium roseum DSM 43021  Bacteria  normal  0.59096  normal  0.157721 
 
 
-
 
NC_013721  HMPREF0424_0644  response regulator receiver domain protein  41.83 
 
 
261 aa  191  6e-48  Gardnerella vaginalis 409-05  Bacteria  n/a    normal  0.520039 
 
 
-
 
NC_014151  Cfla_2391  two component transcriptional regulator, LuxR family  50.43 
 
 
239 aa  191  9e-48  Cellulomonas flavigena DSM 20109  Bacteria  normal  0.0696687  hitchhiker  0.00128542 
 
 
-
 
NC_013159  Svir_26840  response regulator containing a CheY-like receiver domain protein and an HTH DNA-binding domain protein  50 
 
 
239 aa  191  1e-47  Saccharomonospora viridis DSM 43017  Bacteria  normal  0.274056  normal  0.228776 
 
 
-
 
NC_014210  Ndas_1477  two component transcriptional regulator, LuxR family  49.56 
 
 
234 aa  191  1e-47  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  0.594471  normal 
 
 
-
 
NC_013169  Ksed_04500  response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain  47.32 
 
 
244 aa  190  1e-47  Kytococcus sedentarius DSM 20547  Bacteria  normal  normal 
 
 
-
 
NC_013510  Tcur_4491  two component transcriptional regulator, LuxR family  51.6 
 
 
225 aa  189  2e-47  Thermomonospora curvata DSM 43183  Bacteria  normal  n/a   
 
 
-
 
Page 1 of 3    << first  < prev  1  2  3    next >  last >>