More than 300 homologs were found in PanDaTox collection
for query gene Franean1_7117 on replicon NC_009921
Organism: Frankia sp. EAN1pec



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_009921  Franean1_7117  two component LuxR family transcriptional regulator  100 
 
 
214 aa  414  9.999999999999999e-116  Frankia sp. EAN1pec  Bacteria  normal  normal 
 
 
-
 
NC_009921  Franean1_3390  two component LuxR family transcriptional regulator  59.91 
 
 
226 aa  244  4.9999999999999997e-64  Frankia sp. EAN1pec  Bacteria  normal  0.0389848  normal 
 
 
-
 
NC_013521  Sked_36930  response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain  57.87 
 
 
222 aa  235  3e-61  Sanguibacter keddieii DSM 10542  Bacteria  normal  normal  0.811978 
 
 
-
 
NC_013510  Tcur_0110  two component transcriptional regulator, LuxR family  57.94 
 
 
222 aa  233  2.0000000000000002e-60  Thermomonospora curvata DSM 43183  Bacteria  normal  n/a   
 
 
-
 
NC_009921  Franean1_3727  two component LuxR family transcriptional regulator  57.14 
 
 
226 aa  231  8.000000000000001e-60  Frankia sp. EAN1pec  Bacteria  normal  normal  0.554715 
 
 
-
 
NC_013131  Caci_1951  two component transcriptional regulator, LuxR family  58.6 
 
 
226 aa  228  6e-59  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal  0.0924411 
 
 
-
 
NC_013093  Amir_6405  two component transcriptional regulator, LuxR family  56.02 
 
 
225 aa  226  2e-58  Actinosynnema mirum DSM 43827  Bacteria  normal  n/a   
 
 
-
 
NC_013235  Namu_3387  two component transcriptional regulator, LuxR family  57.14 
 
 
223 aa  226  2e-58  Nakamurella multipartita DSM 44233  Bacteria  hitchhiker  0.0000386408  hitchhiker  0.000570848 
 
 
-
 
NC_013757  Gobs_2015  two component transcriptional regulator, LuxR family  56.56 
 
 
232 aa  226  3e-58  Geodermatophilus obscurus DSM 43160  Bacteria  normal  0.706703  n/a   
 
 
-
 
NC_013947  Snas_2037  two component transcriptional regulator, LuxR family  57.01 
 
 
225 aa  224  5.0000000000000005e-58  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  normal  0.137578 
 
 
-
 
NC_013530  Xcel_1618  two component transcriptional regulator, LuxR family  57.48 
 
 
220 aa  224  8e-58  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  n/a   
 
 
-
 
NC_013595  Sros_8793  response regulator receiver protein  56.94 
 
 
221 aa  224  8e-58  Streptosporangium roseum DSM 43021  Bacteria  normal  0.321987  normal 
 
 
-
 
NC_013595  Sros_5619  response regulator receiver protein  58.14 
 
 
226 aa  223  1e-57  Streptosporangium roseum DSM 43021  Bacteria  normal  0.0556461  normal  0.802866 
 
 
-
 
NC_009921  Franean1_4684  two component LuxR family transcriptional regulator  54.17 
 
 
223 aa  222  3e-57  Frankia sp. EAN1pec  Bacteria  normal  0.51425  normal 
 
 
-
 
NC_013131  Caci_6049  two component transcriptional regulator, LuxR family  59.45 
 
 
224 aa  221  4.9999999999999996e-57  Catenulispora acidiphila DSM 44928  Bacteria  normal  0.764436  normal 
 
 
-
 
NC_013131  Caci_3748  two component transcriptional regulator, LuxR family  56.74 
 
 
236 aa  221  7e-57  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal 
 
 
-
 
NC_013947  Snas_4946  two component transcriptional regulator, LuxR family  53.27 
 
 
224 aa  219  3e-56  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.13115  normal 
 
 
-
 
NC_013947  Snas_1740  two component transcriptional regulator, LuxR family  55.61 
 
 
228 aa  219  3e-56  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  normal 
 
 
-
 
NC_013947  Snas_4662  two component transcriptional regulator, LuxR family  53.02 
 
 
221 aa  218  6e-56  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.142047  hitchhiker  0.00679998 
 
 
-
 
NC_014210  Ndas_3601  two component transcriptional regulator, LuxR family  56.74 
 
 
222 aa  217  1e-55  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  0.324048  normal 
 
 
-
 
NC_012669  Bcav_0102  two component transcriptional regulator, LuxR family  56.07 
 
 
221 aa  216  2e-55  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.0637251  normal 
 
 
-
 
NC_013595  Sros_4508  response regulator receiver protein  54.46 
 
 
219 aa  214  5.9999999999999996e-55  Streptosporangium roseum DSM 43021  Bacteria  normal  0.401356  normal  0.568133 
 
 
-
 
NC_014165  Tbis_1846  LuxR family two component transcriptional regulator  56.68 
 
 
226 aa  213  1.9999999999999998e-54  Thermobispora bispora DSM 43833  Bacteria  normal  0.699471  normal 
 
 
-
 
NC_013595  Sros_8243  response regulator receiver protein  56.6 
 
 
217 aa  212  2.9999999999999995e-54  Streptosporangium roseum DSM 43021  Bacteria  normal  0.931194  normal  0.230681 
 
 
-
 
NC_013595  Sros_5905  response regulator receiver protein  55.96 
 
 
227 aa  212  2.9999999999999995e-54  Streptosporangium roseum DSM 43021  Bacteria  normal  0.0252894  normal  0.145246 
 
 
-
 
NC_013595  Sros_3251  response regulator receiver protein  54.42 
 
 
221 aa  211  3.9999999999999995e-54  Streptosporangium roseum DSM 43021  Bacteria  normal  0.0793449  normal 
 
 
-
 
NC_013510  Tcur_2302  two component transcriptional regulator, LuxR family  54.38 
 
 
226 aa  211  4.9999999999999996e-54  Thermomonospora curvata DSM 43183  Bacteria  normal  0.0191252  n/a   
 
 
-
 
NC_009380  Strop_4132  response regulator receiver  55.35 
 
 
235 aa  211  4.9999999999999996e-54  Salinispora tropica CNB-440  Bacteria  normal  0.232221  normal 
 
 
-
 
NC_013170  Ccur_01320  response regulator containing a CheY-like receiver domain protein and an HTH DNA-binding domain protein  53.27 
 
 
261 aa  211  4.9999999999999996e-54  Cryptobacterium curtum DSM 15641  Bacteria  normal  normal 
 
 
-
 
NC_013131  Caci_7160  two component transcriptional regulator, LuxR family  54.59 
 
 
224 aa  210  1e-53  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal 
 
 
-
 
NC_014210  Ndas_1972  two component transcriptional regulator, LuxR family  53.05 
 
 
217 aa  210  1e-53  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  unclonable  0.0000000794288  unclonable  0.0000000332591 
 
 
-
 
NC_013595  Sros_3244  response regulator receiver protein  55.19 
 
 
218 aa  209  3e-53  Streptosporangium roseum DSM 43021  Bacteria  hitchhiker  0.000568428  normal  0.332742 
 
 
-
 
NC_013595  Sros_4577  response regulator receiver protein  54.95 
 
 
223 aa  208  4e-53  Streptosporangium roseum DSM 43021  Bacteria  normal  normal  0.172592 
 
 
-
 
NC_013739  Cwoe_4855  two component transcriptional regulator, LuxR family  52.42 
 
 
244 aa  208  5e-53  Conexibacter woesei DSM 14684  Bacteria  normal  0.093919  normal 
 
 
-
 
NC_014210  Ndas_2087  two component transcriptional regulator, LuxR family  55.81 
 
 
247 aa  208  6e-53  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  0.73112  normal 
 
 
-
 
NC_013093  Amir_2232  two component transcriptional regulator, LuxR family  58.02 
 
 
302 aa  207  1e-52  Actinosynnema mirum DSM 43827  Bacteria  normal  0.501029  n/a   
 
 
-
 
NC_013131  Caci_7105  two component transcriptional regulator, LuxR family  53.88 
 
 
241 aa  207  1e-52  Catenulispora acidiphila DSM 44928  Bacteria  normal  0.106023  normal  0.469545 
 
 
-
 
NC_013131  Caci_7843  two component transcriptional regulator, LuxR family  54.59 
 
 
231 aa  205  5e-52  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal  0.176081 
 
 
-
 
NC_013131  Caci_0956  two component transcriptional regulator, LuxR family  53.92 
 
 
221 aa  204  6e-52  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal 
 
 
-
 
NC_013595  Sros_5304  response regulator receiver protein  53.02 
 
 
220 aa  204  7e-52  Streptosporangium roseum DSM 43021  Bacteria  normal  0.128918  normal 
 
 
-
 
NC_013131  Caci_6963  two component transcriptional regulator, LuxR family  50.91 
 
 
225 aa  204  7e-52  Catenulispora acidiphila DSM 44928  Bacteria  normal  0.029709  normal 
 
 
-
 
NC_013947  Snas_2557  two component transcriptional regulator, LuxR family  54.42 
 
 
224 aa  204  9e-52  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.231398  normal  0.0978001 
 
 
-
 
NC_012669  Bcav_1049  two component transcriptional regulator, LuxR family  55 
 
 
222 aa  202  2e-51  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.661499  normal  0.245945 
 
 
-
 
NC_013595  Sros_1523  response regulator receiver protein  52.34 
 
 
215 aa  202  3e-51  Streptosporangium roseum DSM 43021  Bacteria  normal  0.894169  normal  0.0152488 
 
 
-
 
NC_013172  Bfae_20460  response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain  52.29 
 
 
229 aa  202  3e-51  Brachybacterium faecium DSM 4810  Bacteria  normal  0.0212792  n/a   
 
 
-
 
NC_013093  Amir_4511  two component transcriptional regulator, LuxR family  53.55 
 
 
226 aa  202  4e-51  Actinosynnema mirum DSM 43827  Bacteria  normal  0.11054  n/a   
 
 
-
 
NC_013947  Snas_4575  two component transcriptional regulator, LuxR family  54.13 
 
 
224 aa  202  4e-51  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.703378  normal  0.112036 
 
 
-
 
NC_014151  Cfla_0857  two component transcriptional regulator, LuxR family  51.4 
 
 
219 aa  201  6e-51  Cellulomonas flavigena DSM 20109  Bacteria  normal  0.0762303  normal 
 
 
-
 
NC_009921  Franean1_3185  two component LuxR family transcriptional regulator  52.97 
 
 
223 aa  201  6e-51  Frankia sp. EAN1pec  Bacteria  normal  0.704721  normal 
 
 
-
 
NC_014151  Cfla_2842  two component transcriptional regulator, LuxR family  54.22 
 
 
226 aa  201  7e-51  Cellulomonas flavigena DSM 20109  Bacteria  normal  0.622781  decreased coverage  0.00305681 
 
 
-
 
NC_012669  Bcav_4002  two component transcriptional regulator, LuxR family  54.21 
 
 
222 aa  201  7e-51  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.947887  normal  0.770727 
 
 
-
 
NC_013739  Cwoe_3768  two component transcriptional regulator, LuxR family  52.73 
 
 
223 aa  201  8e-51  Conexibacter woesei DSM 14684  Bacteria  normal  0.28303  normal  0.763501 
 
 
-
 
NC_009921  Franean1_6511  two component LuxR family transcriptional regulator  53.99 
 
 
215 aa  200  9.999999999999999e-51  Frankia sp. EAN1pec  Bacteria  normal  normal  0.100644 
 
 
-
 
NC_007333  Tfu_0767  LuxR response regulator receiver  53.27 
 
 
221 aa  199  1.9999999999999998e-50  Thermobifida fusca YX  Bacteria  normal  0.88397  n/a   
 
 
-
 
NC_013721  HMPREF0424_0644  response regulator receiver domain protein  42.4 
 
 
261 aa  200  1.9999999999999998e-50  Gardnerella vaginalis 409-05  Bacteria  n/a    normal  0.520039 
 
 
-
 
NC_013441  Gbro_4119  response regulator receiver  50.46 
 
 
230 aa  199  1.9999999999999998e-50  Gordonia bronchialis DSM 43247  Bacteria  normal  n/a   
 
 
-
 
NC_013947  Snas_1903  two component transcriptional regulator, LuxR family  54.67 
 
 
225 aa  199  1.9999999999999998e-50  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.202425  normal  0.182857 
 
 
-
 
NC_014165  Tbis_0951  LuxR family two component transcriptional regulator  51.39 
 
 
221 aa  199  3.9999999999999996e-50  Thermobispora bispora DSM 43833  Bacteria  normal  0.392411  normal  0.343359 
 
 
-
 
NC_009664  Krad_4217  two component transcriptional regulator, LuxR family  53.21 
 
 
225 aa  198  3.9999999999999996e-50  Kineococcus radiotolerans SRS30216  Bacteria  decreased coverage  0.000816589  normal  0.757819 
 
 
-
 
NC_013093  Amir_7009  two component transcriptional regulator, LuxR family  51.16 
 
 
218 aa  198  5e-50  Actinosynnema mirum DSM 43827  Bacteria  normal  0.0896567  n/a   
 
 
-
 
NC_009664  Krad_1998  two component transcriptional regulator, LuxR family  53.15 
 
 
225 aa  198  6e-50  Kineococcus radiotolerans SRS30216  Bacteria  normal  0.12496  normal 
 
 
-
 
NC_013739  Cwoe_0356  two component transcriptional regulator, LuxR family  53.49 
 
 
220 aa  197  7e-50  Conexibacter woesei DSM 14684  Bacteria  normal  0.165726  normal  0.0985551 
 
 
-
 
NC_013521  Sked_37860  response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain  53.46 
 
 
221 aa  197  7e-50  Sanguibacter keddieii DSM 10542  Bacteria  normal  normal 
 
 
-
 
NC_013947  Snas_3287  two component transcriptional regulator, LuxR family  50 
 
 
233 aa  197  7.999999999999999e-50  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.0842926  normal  0.330639 
 
 
-
 
NC_013947  Snas_5265  two component transcriptional regulator, LuxR family  52.58 
 
 
218 aa  197  1.0000000000000001e-49  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  normal 
 
 
-
 
NC_013595  Sros_7301  response regulator receiver protein  55.56 
 
 
220 aa  197  1.0000000000000001e-49  Streptosporangium roseum DSM 43021  Bacteria  normal  normal 
 
 
-
 
NC_013947  Snas_0645  two component transcriptional regulator, LuxR family  50.23 
 
 
220 aa  196  2.0000000000000003e-49  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.691779  normal 
 
 
-
 
NC_007777  Francci3_0303  two component LuxR family transcriptional regulator  52.58 
 
 
214 aa  195  3e-49  Frankia sp. CcI3  Bacteria  normal  normal 
 
 
-
 
NC_013174  Jden_1873  two component transcriptional regulator, LuxR family  48.2 
 
 
233 aa  195  3e-49  Jonesia denitrificans DSM 20603  Bacteria  normal  0.145213  normal  0.385799 
 
 
-
 
NC_013131  Caci_8412  two component transcriptional regulator, LuxR family  52.56 
 
 
239 aa  195  5.000000000000001e-49  Catenulispora acidiphila DSM 44928  Bacteria  normal  normal 
 
 
-
 
NC_009664  Krad_1981  two component transcriptional regulator, LuxR family  52.02 
 
 
230 aa  195  5.000000000000001e-49  Kineococcus radiotolerans SRS30216  Bacteria  normal  normal 
 
 
-
 
NC_013530  Xcel_2601  two component transcriptional regulator, LuxR family  51.35 
 
 
234 aa  194  7e-49  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  0.1212  n/a   
 
 
-
 
NC_013131  Caci_1616  two component transcriptional regulator, LuxR family  51.58 
 
 
226 aa  194  8.000000000000001e-49  Catenulispora acidiphila DSM 44928  Bacteria  normal  0.0231149  normal  0.0629914 
 
 
-
 
NC_013947  Snas_4479  two component transcriptional regulator, LuxR family  50.7 
 
 
224 aa  194  8.000000000000001e-49  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.518456  normal  0.598935 
 
 
-
 
NC_009380  Strop_1796  response regulator receiver  52.78 
 
 
230 aa  194  1e-48  Salinispora tropica CNB-440  Bacteria  normal  normal 
 
 
-
 
NC_012669  Bcav_2822  two component transcriptional regulator, LuxR family  50.68 
 
 
231 aa  193  1e-48  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.311075  normal 
 
 
-
 
NC_013521  Sked_03540  response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain  51.79 
 
 
226 aa  194  1e-48  Sanguibacter keddieii DSM 10542  Bacteria  normal  normal 
 
 
-
 
NC_009664  Krad_1198  two component transcriptional regulator, LuxR family  49.54 
 
 
225 aa  192  2e-48  Kineococcus radiotolerans SRS30216  Bacteria  normal  0.109916  normal  0.0247339 
 
 
-
 
NC_009953  Sare_1782  two component LuxR family transcriptional regulator  52.09 
 
 
230 aa  193  2e-48  Salinispora arenicola CNS-205  Bacteria  normal  hitchhiker  0.0025253 
 
 
-
 
NC_010816  BLD_0671  putative response regulator  47.52 
 
 
248 aa  193  2e-48  Bifidobacterium longum DJO10A  Bacteria  normal  0.248332  n/a   
 
 
-
 
NC_008697  Noca_4902  response regulator receiver  51.64 
 
 
216 aa  192  4e-48  Nocardioides sp. JS614  Bacteria  normal  0.443208  normal  0.676579 
 
 
-
 
NC_013131  Caci_2656  two component transcriptional regulator, LuxR family  53.74 
 
 
226 aa  192  4e-48  Catenulispora acidiphila DSM 44928  Bacteria  normal  0.161573  normal 
 
 
-
 
NC_013159  Svir_26840  response regulator containing a CheY-like receiver domain protein and an HTH DNA-binding domain protein  50.93 
 
 
239 aa  191  5e-48  Saccharomonospora viridis DSM 43017  Bacteria  normal  0.274056  normal  0.228776 
 
 
-
 
NC_013739  Cwoe_3988  two component transcriptional regulator, LuxR family  51.4 
 
 
228 aa  191  5e-48  Conexibacter woesei DSM 14684  Bacteria  normal  0.0354189  normal  0.736565 
 
 
-
 
NC_013530  Xcel_1619  two component transcriptional regulator, LuxR family  50.93 
 
 
234 aa  191  5e-48  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  n/a   
 
 
-
 
NC_013739  Cwoe_1616  two component transcriptional regulator, LuxR family  51.8 
 
 
229 aa  191  7e-48  Conexibacter woesei DSM 14684  Bacteria  normal  normal 
 
 
-
 
NC_014151  Cfla_2391  two component transcriptional regulator, LuxR family  49.79 
 
 
239 aa  191  9e-48  Cellulomonas flavigena DSM 20109  Bacteria  normal  0.0696687  hitchhiker  0.00128542 
 
 
-
 
NC_013172  Bfae_11600  response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain  49.53 
 
 
225 aa  191  9e-48  Brachybacterium faecium DSM 4810  Bacteria  decreased coverage  0.00120804  n/a   
 
 
-
 
NC_013521  Sked_08490  response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain  48.42 
 
 
236 aa  190  1e-47  Sanguibacter keddieii DSM 10542  Bacteria  normal  0.199706  normal  0.526513 
 
 
-
 
NC_009921  Franean1_7161  two component LuxR family transcriptional regulator  51.16 
 
 
225 aa  190  1e-47  Frankia sp. EAN1pec  Bacteria  normal  0.0588186  normal  0.118819 
 
 
-
 
NC_013204  Elen_2822  two component transcriptional regulator, LuxR family  50 
 
 
228 aa  191  1e-47  Eggerthella lenta DSM 2243  Bacteria  normal  0.0415698  normal  0.590713 
 
 
-
 
NC_011886  Achl_2270  two component transcriptional regulator, LuxR family  51.11 
 
 
242 aa  190  1e-47  Arthrobacter chlorophenolicus A6  Bacteria  n/a    hitchhiker  0.000000000113212 
 
 
-
 
NC_013947  Snas_3359  two component transcriptional regulator, LuxR family  50.93 
 
 
219 aa  189  2e-47  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.0172663  normal 
 
 
-
 
NC_013947  Snas_5644  two component transcriptional regulator, LuxR family  52.8 
 
 
225 aa  189  4e-47  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  normal  0.114252 
 
 
-
 
NC_012669  Bcav_2449  two component transcriptional regulator, LuxR family  53.24 
 
 
220 aa  188  5.999999999999999e-47  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.729355  normal 
 
 
-
 
NC_014210  Ndas_4857  two component transcriptional regulator, LuxR family  50.22 
 
 
234 aa  188  7e-47  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  normal  0.243741 
 
 
-
 
NC_008699  Noca_1020  response regulator receiver  49.53 
 
 
218 aa  187  8e-47  Nocardioides sp. JS614  Bacteria  normal  0.648692  n/a   
 
 
-
 
NC_013595  Sros_4468  response regulator receiver protein  50.93 
 
 
219 aa  187  8e-47  Streptosporangium roseum DSM 43021  Bacteria  normal  0.0876299  normal  0.32237 
 
 
-
 
NC_013739  Cwoe_4937  two component transcriptional regulator, LuxR family  50.23 
 
 
224 aa  187  8e-47  Conexibacter woesei DSM 14684  Bacteria  normal  0.570807  normal  0.210467 
 
 
-
 
NC_009664  Krad_2599  two component transcriptional regulator, LuxR family  49.76 
 
 
211 aa  187  1e-46  Kineococcus radiotolerans SRS30216  Bacteria  normal  normal 
 
 
-
 
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