| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Francci3_0303 |
|---|
| Symbol | |
|---|
| ID | 3903335 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Frankia sp. CcI3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007777 |
|---|
| Strand | - |
|---|
| Start bp | 350786 |
|---|
| End bp | 351430 |
|---|
| Gene Length | 645 bp |
|---|
| Protein Length | 214 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 72% |
|---|
| IMG OID | 637877632 |
|---|
| Product | two component LuxR family transcriptional regulator |
|---|
| Protein accession | YP_479419 |
|---|
| Protein GI | 86739019 |
|---|
| COG category | [K] Transcription
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG2197] Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 24 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 14 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGATCCGGG TGGCGGTGGC CGACGACCAG CCGCTGGTGC GGCTCGGGCT GCGGGTACTC
ATCGAGACCG AGGACGATCT GGAGCTCGTC GGCGAGGCCG AGGACGGTCG GGCCGCGGTC
GAACTCGTCC GCGCCACCCG ACCCGACGTC GTGCTGCTCG ACATCCGCAT GCCGGTCCTC
GACGGGCTGG CGGCGCTGCG GACGATCGTC GAGGATCCCG ACCTGGCCGC TACCCGGGTC
GTCATGGTCA CCACCTTTGA GCTGGACGAA TACGTCTTCG AGGCGTTGCG GGGCGGCGCC
TCGGGCTTCG TGCTCAAGGA CACCGAGGCC GCCGACCTGC TGCGAGCGAT CCGGGTCGTC
GCCGCGGGCG AGTCTCTGCT CTCCCCGACG GTGACCCGAC TCGTCATCGA GACCTTCGCC
CGCCGGCCAG CCGCCGTCGC CGCCCCGGAC CTGCGCGGGC TGACCGTGCG GGAACGCGAG
GTGATGAGCC TCGTCGGCCA CGGGCTGTCC AACGACGAGA TCGCCGCCCG ACTGGTGATC
AGTCCGGCGA CGGCCCGCAC CCACGTGAGC CGGGTGATGG TGAAACTGGC GGCGCGGGAC
CGGGCCCAGC TCGCCGTCCT GGCCCACCAG GCCGGCCTCG TCTGA
|
|---|
| Protein sequence | MIRVAVADDQ PLVRLGLRVL IETEDDLELV GEAEDGRAAV ELVRATRPDV VLLDIRMPVL
DGLAALRTIV EDPDLAATRV VMVTTFELDE YVFEALRGGA SGFVLKDTEA ADLLRAIRVV
AAGESLLSPT VTRLVIETFA RRPAAVAAPD LRGLTVRERE VMSLVGHGLS NDEIAARLVI
SPATARTHVS RVMVKLAARD RAQLAVLAHQ AGLV
|
|---|
| |