More than 300 homologs were found in PanDaTox collection
for query gene BBta_2904 on replicon NC_009485
Organism: Bradyrhizobium sp. BTAi1



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_009485  BBta_2904  putative methyl-accepting chemotaxis protein  100 
 
 
568 aa  1117    Bradyrhizobium sp. BTAi1  Bacteria  normal  0.481458  normal  0.283558 
 
 
-
 
NC_009485  BBta_2903  methyl-accepting chemotaxis sensory transducer  85.56 
 
 
568 aa  899    Bradyrhizobium sp. BTAi1  Bacteria  normal  0.335645  normal  0.0996392 
 
 
-
 
NC_011004  Rpal_2757  methyl-accepting chemotaxis sensory transducer  53.31 
 
 
561 aa  520  1e-146  Rhodopseudomonas palustris TIE-1  Bacteria  normal  0.0630329  n/a   
 
 
-
 
NC_007925  RPC_1795  methyl-accepting chemotaxis sensory transducer  54.18 
 
 
561 aa  512  1e-144  Rhodopseudomonas palustris BisB18  Bacteria  normal  0.432423  normal  0.0230577 
 
 
-
 
NC_007778  RPB_2983  methyl-accepting chemotaxis sensory transducer  54.36 
 
 
561 aa  506  9.999999999999999e-143  Rhodopseudomonas palustris HaA2  Bacteria  normal  normal  0.0323515 
 
 
-
 
NC_009485  BBta_2906  putative methyl-accepting chemotaxis protein  55.59 
 
 
564 aa  504  1e-141  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.430156  normal  0.106702 
 
 
-
 
NC_007778  RPB_2358  methyl-accepting chemotaxis sensory transducer  71.95 
 
 
673 aa  497  1e-139  Rhodopseudomonas palustris HaA2  Bacteria  normal  normal  0.207811 
 
 
-
 
NC_009485  BBta_2907  putative methyl-accepting chemotaxis protein  78.53 
 
 
556 aa  497  1e-139  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.835875  normal  0.0729634 
 
 
-
 
NC_007958  RPD_3107  chemotaxis sensory transducer  72.73 
 
 
674 aa  496  1e-139  Rhodopseudomonas palustris BisB5  Bacteria  normal  normal  0.0664997 
 
 
-
 
NC_007958  RPD_2465  chemotaxis sensory transducer  52.82 
 
 
561 aa  491  1e-137  Rhodopseudomonas palustris BisB5  Bacteria  normal  0.5909  normal  0.697276 
 
 
-
 
NC_007778  RPB_2250  methyl-accepting chemotaxis sensory transducer  62.07 
 
 
670 aa  486  1e-136  Rhodopseudomonas palustris HaA2  Bacteria  normal  normal 
 
 
-
 
NC_009485  BBta_2901  methyl-accepting chemotaxis sensory transducer  75.49 
 
 
674 aa  482  1e-135  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.14772  normal  0.22504 
 
 
-
 
NC_009485  BBta_6483  methyl-accepting chemotaxis protein  50.61 
 
 
565 aa  480  1e-134  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.877741  normal 
 
 
-
 
NC_011004  Rpal_3598  methyl-accepting chemotaxis sensory transducer  72.36 
 
 
672 aa  478  1e-134  Rhodopseudomonas palustris TIE-1  Bacteria  normal  n/a   
 
 
-
 
NC_009485  BBta_0969  methyl-accepting chemotaxis sensory transducer  50.93 
 
 
562 aa  471  1.0000000000000001e-131  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.956339  normal  0.570918 
 
 
-
 
NC_007958  RPD_0153  chemotaxis sensory transducer  70.97 
 
 
602 aa  471  1.0000000000000001e-131  Rhodopseudomonas palustris BisB5  Bacteria  normal  normal 
 
 
-
 
NC_009485  BBta_6635  methyl-accepting chemotaxis protein  68.59 
 
 
565 aa  464  1e-129  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.459746  normal  0.104137 
 
 
-
 
NC_007925  RPC_3380  methyl-accepting chemotaxis sensory transducer  68.75 
 
 
567 aa  464  1e-129  Rhodopseudomonas palustris BisB18  Bacteria  normal  normal  0.689596 
 
 
-
 
NC_007925  RPC_3804  methyl-accepting chemotaxis sensory transducer  68.65 
 
 
655 aa  462  1e-129  Rhodopseudomonas palustris BisB18  Bacteria  normal  0.772812  normal 
 
 
-
 
NC_007925  RPC_4406  methyl-accepting chemotaxis sensory transducer  49.4 
 
 
566 aa  464  1e-129  Rhodopseudomonas palustris BisB18  Bacteria  normal  normal  0.341232 
 
 
-
 
NC_007925  RPC_4407  methyl-accepting chemotaxis sensory transducer  49.74 
 
 
566 aa  461  9.999999999999999e-129  Rhodopseudomonas palustris BisB18  Bacteria  normal  normal  0.365939 
 
 
-
 
NC_009485  BBta_7508  putative methyl-accepting chemotaxis protein (with a HAMP region)  69.03 
 
 
552 aa  456  1e-127  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.692825  normal 
 
 
-
 
NC_007958  RPD_3547  chemotaxis sensory transducer  50.85 
 
 
566 aa  452  1.0000000000000001e-126  Rhodopseudomonas palustris BisB5  Bacteria  normal  normal 
 
 
-
 
NC_007958  RPD_0065  chemotaxis sensory transducer  64.69 
 
 
688 aa  447  1.0000000000000001e-124  Rhodopseudomonas palustris BisB5  Bacteria  normal  normal  0.0714339 
 
 
-
 
NC_007958  RPD_1918  chemotaxis sensory transducer  66.4 
 
 
688 aa  445  1.0000000000000001e-124  Rhodopseudomonas palustris BisB5  Bacteria  normal  normal  0.537222 
 
 
-
 
NC_007925  RPC_2742  methyl-accepting chemotaxis sensory transducer  68.5 
 
 
560 aa  444  1e-123  Rhodopseudomonas palustris BisB18  Bacteria  normal  normal  0.429688 
 
 
-
 
NC_009485  BBta_1388  methyl-accepting chemotaxis sensory transducer  66.67 
 
 
656 aa  439  9.999999999999999e-123  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.0527529  normal  0.207734 
 
 
-
 
NC_007925  RPC_3379  methyl-accepting chemotaxis sensory transducer  72.57 
 
 
587 aa  441  9.999999999999999e-123  Rhodopseudomonas palustris BisB18  Bacteria  normal  0.787169  normal 
 
 
-
 
NC_007925  RPC_4101  methyl-accepting chemotaxis sensory transducer  70 
 
 
698 aa  442  9.999999999999999e-123  Rhodopseudomonas palustris BisB18  Bacteria  normal  normal 
 
 
-
 
NC_007958  RPD_0497  chemotaxis sensory transducer  63.93 
 
 
577 aa  439  9.999999999999999e-123  Rhodopseudomonas palustris BisB5  Bacteria  normal  normal 
 
 
-
 
NC_007958  RPD_0995  chemotaxis sensory transducer  65.82 
 
 
656 aa  442  9.999999999999999e-123  Rhodopseudomonas palustris BisB5  Bacteria  normal  0.880627  normal 
 
 
-
 
NC_009485  BBta_2900  putative methyl-accepting chemotaxis receptor/sensory transducer (chemoreceptor)  59.21 
 
 
675 aa  436  1e-121  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.142675  normal  0.173139 
 
 
-
 
NC_009485  BBta_4464  methyl-accepting chemotaxis sensory transducer  65.01 
 
 
573 aa  435  1e-121  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.610641  normal  0.757777 
 
 
-
 
NC_007778  RPB_0192  methyl-accepting chemotaxis sensory transducer  67.02 
 
 
688 aa  437  1e-121  Rhodopseudomonas palustris HaA2  Bacteria  normal  normal 
 
 
-
 
NC_007778  RPB_3545  methyl-accepting chemotaxis sensory transducer  66.13 
 
 
689 aa  436  1e-121  Rhodopseudomonas palustris HaA2  Bacteria  normal  0.457552  normal  0.598514 
 
 
-
 
NC_007778  RPB_4280  methyl-accepting chemotaxis sensory transducer  68.63 
 
 
563 aa  437  1e-121  Rhodopseudomonas palustris HaA2  Bacteria  normal  normal 
 
 
-
 
NC_011004  Rpal_2025  methyl-accepting chemotaxis sensory transducer  60.91 
 
 
688 aa  434  1e-120  Rhodopseudomonas palustris TIE-1  Bacteria  normal  0.0110809  n/a   
 
 
-
 
NC_007925  RPC_1843  methyl-accepting chemotaxis sensory transducer  66.86 
 
 
568 aa  431  1e-119  Rhodopseudomonas palustris BisB18  Bacteria  normal  normal  0.618754 
 
 
-
 
NC_007925  RPC_2149  methyl-accepting chemotaxis sensory transducer  66.48 
 
 
675 aa  427  1e-118  Rhodopseudomonas palustris BisB18  Bacteria  normal  normal  0.0391093 
 
 
-
 
NC_009485  BBta_2368  putative methyl-accepting chemotaxis receptor/sensory transducer precursor  49.41 
 
 
561 aa  423  1e-117  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal  0.280114 
 
 
-
 
NC_009485  BBta_6717  methyl-accepting chemotaxis sensory transducer  67.48 
 
 
741 aa  424  1e-117  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.447835  normal  0.587139 
 
 
-
 
NC_011004  Rpal_5119  methyl-accepting chemotaxis sensory transducer  52.95 
 
 
563 aa  424  1e-117  Rhodopseudomonas palustris TIE-1  Bacteria  normal  n/a   
 
 
-
 
NC_007925  RPC_2744  methyl-accepting chemotaxis sensory transducer  63.49 
 
 
572 aa  424  1e-117  Rhodopseudomonas palustris BisB18  Bacteria  normal  0.696609  normal  0.585687 
 
 
-
 
NC_007925  RPC_3161  methyl-accepting chemotaxis sensory transducer  65.51 
 
 
731 aa  424  1e-117  Rhodopseudomonas palustris BisB18  Bacteria  normal  0.072786  normal 
 
 
-
 
NC_007925  RPC_3378  methyl-accepting chemotaxis sensory transducer  64.06 
 
 
563 aa  423  1e-117  Rhodopseudomonas palustris BisB18  Bacteria  normal  0.104618  normal 
 
 
-
 
NC_007958  RPD_0994  chemotaxis sensory transducer  64.38 
 
 
656 aa  424  1e-117  Rhodopseudomonas palustris BisB5  Bacteria  normal  0.357708  normal 
 
 
-
 
NC_009485  BBta_2905  putative methyl-accepting chemotaxis protein  65.61 
 
 
542 aa  421  1e-116  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.234112  normal  0.211145 
 
 
-
 
NC_011004  Rpal_4118  methyl-accepting chemotaxis sensory transducer  63.32 
 
 
567 aa  420  1e-116  Rhodopseudomonas palustris TIE-1  Bacteria  normal  n/a   
 
 
-
 
NC_011004  Rpal_5120  methyl-accepting chemotaxis sensory transducer  51.73 
 
 
563 aa  416  9.999999999999999e-116  Rhodopseudomonas palustris TIE-1  Bacteria  normal  n/a   
 
 
-
 
NC_007925  RPC_1253  methyl-accepting chemotaxis sensory transducer  69.55 
 
 
567 aa  418  9.999999999999999e-116  Rhodopseudomonas palustris BisB18  Bacteria  normal  normal  0.010155 
 
 
-
 
NC_009485  BBta_2908  methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor  72.98 
 
 
561 aa  415  1e-114  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal  0.07018 
 
 
-
 
NC_007958  RPD_1857  chemotaxis sensory transducer  54.39 
 
 
563 aa  413  1e-114  Rhodopseudomonas palustris BisB5  Bacteria  normal  normal 
 
 
-
 
NC_011004  Rpal_5172  methyl-accepting chemotaxis sensory transducer  65.5 
 
 
656 aa  411  1e-113  Rhodopseudomonas palustris TIE-1  Bacteria  normal  n/a   
 
 
-
 
NC_007778  RPB_4286  methyl-accepting chemotaxis sensory transducer  60.79 
 
 
563 aa  410  1e-113  Rhodopseudomonas palustris HaA2  Bacteria  normal  normal 
 
 
-
 
NC_007925  RPC_3377  methyl-accepting chemotaxis sensory transducer  51.75 
 
 
563 aa  411  1e-113  Rhodopseudomonas palustris BisB18  Bacteria  normal  0.528008  normal 
 
 
-
 
NC_011004  Rpal_1830  methyl-accepting chemotaxis sensory transducer  64.21 
 
 
563 aa  407  1.0000000000000001e-112  Rhodopseudomonas palustris TIE-1  Bacteria  normal  n/a   
 
 
-
 
NC_011004  Rpal_1871  methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor  62.86 
 
 
716 aa  404  1e-111  Rhodopseudomonas palustris TIE-1  Bacteria  normal  n/a   
 
 
-
 
NC_007778  RPB_1321  methyl-accepting chemotaxis sensory transducer  65.45 
 
 
730 aa  402  1e-111  Rhodopseudomonas palustris HaA2  Bacteria  normal  0.0177086  normal  0.260794 
 
 
-
 
NC_011004  Rpal_4783  methyl-accepting chemotaxis sensory transducer  66.29 
 
 
730 aa  405  1e-111  Rhodopseudomonas palustris TIE-1  Bacteria  normal  n/a   
 
 
-
 
NC_007406  Nwi_2996  methyl-accepting chemotaxis protein  60.86 
 
 
698 aa  402  9.999999999999999e-111  Nitrobacter winogradskyi Nb-255  Bacteria  normal  normal 
 
 
-
 
NC_009485  BBta_2902  methyl-accepting chemotaxis sensory transducer  67.83 
 
 
563 aa  402  9.999999999999999e-111  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.32606  normal  0.0943242 
 
 
-
 
NC_007778  RPB_0489  methyl-accepting chemotaxis sensory transducer  55.47 
 
 
564 aa  400  9.999999999999999e-111  Rhodopseudomonas palustris HaA2  Bacteria  normal  0.301128  normal 
 
 
-
 
NC_007778  RPB_2961  methyl-accepting chemotaxis sensory transducer  55.18 
 
 
563 aa  400  9.999999999999999e-111  Rhodopseudomonas palustris HaA2  Bacteria  normal  normal 
 
 
-
 
NC_009485  BBta_4269  putative methyl-accepting chemotaxis receptor/sensory transducer protein  66.86 
 
 
691 aa  399  9.999999999999999e-111  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal  0.35374 
 
 
-
 
NC_011004  Rpal_4941  methyl-accepting chemotaxis sensory transducer  70.29 
 
 
563 aa  401  9.999999999999999e-111  Rhodopseudomonas palustris TIE-1  Bacteria  normal  0.396774  n/a   
 
 
-
 
NC_007964  Nham_1080  methyl-accepting chemotaxis sensory transducer  61 
 
 
698 aa  398  1e-109  Nitrobacter hamburgensis X14  Bacteria  normal  0.0139762  n/a   
 
 
-
 
NC_011004  Rpal_4271  methyl-accepting chemotaxis sensory transducer  44.77 
 
 
567 aa  398  1e-109  Rhodopseudomonas palustris TIE-1  Bacteria  normal  n/a   
 
 
-
 
NC_007958  RPD_0337  chemotaxis sensory transducer  52.06 
 
 
563 aa  396  1e-109  Rhodopseudomonas palustris BisB5  Bacteria  normal  0.760858  normal  0.789667 
 
 
-
 
NC_009485  BBta_2367  putative methyl-accepting chemotaxis receptor/sensory transducer precursor  67.8 
 
 
562 aa  395  1e-108  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal  0.287749 
 
 
-
 
NC_007925  RPC_4580  methyl-accepting chemotaxis sensory transducer  62.1 
 
 
563 aa  395  1e-108  Rhodopseudomonas palustris BisB18  Bacteria  normal  0.174371  normal 
 
 
-
 
NC_009485  BBta_0885  putative methyl-accepting chemotaxis protein  62.23 
 
 
691 aa  389  1e-107  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.493714  normal 
 
 
-
 
NC_011004  Rpal_2142  methyl-accepting chemotaxis sensory transducer  70.96 
 
 
428 aa  388  1e-106  Rhodopseudomonas palustris TIE-1  Bacteria  normal  0.293169  n/a   
 
 
-
 
NC_007778  RPB_2653  methyl-accepting chemotaxis sensory transducer  60.9 
 
 
691 aa  388  1e-106  Rhodopseudomonas palustris HaA2  Bacteria  decreased coverage  0.00184965  normal  0.0777916 
 
 
-
 
NC_007958  RPD_0336  chemotaxis sensory transducer  54.47 
 
 
563 aa  389  1e-106  Rhodopseudomonas palustris BisB5  Bacteria  normal  normal 
 
 
-
 
NC_007958  RPD_1867  chemotaxis sensory transducer  56.04 
 
 
714 aa  385  1e-106  Rhodopseudomonas palustris BisB5  Bacteria  normal  normal  0.133032 
 
 
-
 
NC_009485  BBta_1536  methyl-accepting chemotaxis protein  68 
 
 
716 aa  383  1e-105  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.566253  normal  0.284447 
 
 
-
 
NC_007778  RPB_3610  methyl-accepting chemotaxis sensory transducer  54.86 
 
 
563 aa  383  1e-105  Rhodopseudomonas palustris HaA2  Bacteria  normal  0.735593  normal  0.400148 
 
 
-
 
NC_009485  BBta_2799  putative receptor/sensory transducer  66.67 
 
 
707 aa  379  1e-104  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.0655652  normal 
 
 
-
 
NC_011004  Rpal_0233  methyl-accepting chemotaxis sensory transducer  59.51 
 
 
563 aa  376  1e-103  Rhodopseudomonas palustris TIE-1  Bacteria  normal  n/a   
 
 
-
 
NC_007964  Nham_1045  methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor  57.03 
 
 
564 aa  372  1e-102  Nitrobacter hamburgensis X14  Bacteria  normal  n/a   
 
 
-
 
NC_007925  RPC_4809  methyl-accepting chemotaxis sensory transducer  63.31 
 
 
563 aa  374  1e-102  Rhodopseudomonas palustris BisB18  Bacteria  normal  normal 
 
 
-
 
NC_007925  RPC_2457  methyl-accepting chemotaxis sensory transducer  56.22 
 
 
665 aa  365  1e-99  Rhodopseudomonas palustris BisB18  Bacteria  normal  0.0375918  normal  0.509707 
 
 
-
 
NC_007406  Nwi_0530  methyl-accepting chemotaxis protein  62.42 
 
 
569 aa  361  2e-98  Nitrobacter winogradskyi Nb-255  Bacteria  normal  0.667624  normal 
 
 
-
 
NC_007958  RPD_3581  methyl-accepting chemotaxis sensory transducer  48.35 
 
 
567 aa  360  5e-98  Rhodopseudomonas palustris BisB5  Bacteria  normal  0.0981346  normal  0.985512 
 
 
-
 
NC_007925  RPC_1709  methyl-accepting chemotaxis sensory transducer  50 
 
 
568 aa  358  9.999999999999999e-98  Rhodopseudomonas palustris BisB18  Bacteria  normal  0.55655  normal  0.12205 
 
 
-
 
NC_009485  BBta_0330  putative methyl-accepting chemotaxis receptor/sensory transducer  56.68 
 
 
676 aa  358  1.9999999999999998e-97  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal  0.0869057 
 
 
-
 
NC_007925  RPC_0061  methyl-accepting chemotaxis sensory transducer  55.45 
 
 
674 aa  357  2.9999999999999997e-97  Rhodopseudomonas palustris BisB18  Bacteria  normal  normal 
 
 
-
 
NC_007778  RPB_0914  methyl-accepting chemotaxis sensory transducer  52.79 
 
 
689 aa  353  5e-96  Rhodopseudomonas palustris HaA2  Bacteria  normal  normal  0.497103 
 
 
-
 
NC_007925  RPC_4527  methyl-accepting chemotaxis sensory transducer  57.26 
 
 
667 aa  350  5e-95  Rhodopseudomonas palustris BisB18  Bacteria  normal  normal  0.527831 
 
 
-
 
NC_009485  BBta_0575  methyl-accepting chemotaxis sensory transducer  55.27 
 
 
681 aa  349  8e-95  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal 
 
 
-
 
NC_010505  Mrad2831_2241  methyl-accepting chemotaxis sensory transducer  42.41 
 
 
566 aa  348  2e-94  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal 
 
 
-
 
NC_007778  RPB_1716  methyl-accepting chemotaxis sensory transducer  56.44 
 
 
564 aa  346  5e-94  Rhodopseudomonas palustris HaA2  Bacteria  normal  0.0822312  normal  0.62395 
 
 
-
 
NC_011757  Mchl_3907  methyl-accepting chemotaxis sensory transducer  54.96 
 
 
565 aa  336  7.999999999999999e-91  Methylobacterium chloromethanicum CM4  Bacteria  normal  normal 
 
 
-
 
NC_007958  RPD_1025  methyl-accepting chemotaxis sensory transducer  50.13 
 
 
681 aa  332  1e-89  Rhodopseudomonas palustris BisB5  Bacteria  normal  normal 
 
 
-
 
NC_011004  Rpal_5144  methyl-accepting chemotaxis sensory transducer  53.28 
 
 
686 aa  330  3e-89  Rhodopseudomonas palustris TIE-1  Bacteria  normal  n/a   
 
 
-
 
NC_007778  RPB_1030  methyl-accepting chemotaxis sensory transducer  58.56 
 
 
653 aa  323  6e-87  Rhodopseudomonas palustris HaA2  Bacteria  normal  normal 
 
 
-
 
NC_011757  Mchl_5373  methyl-accepting chemotaxis sensory transducer  56.15 
 
 
565 aa  321  1.9999999999999998e-86  Methylobacterium chloromethanicum CM4  Bacteria  normal  0.620524  normal  0.472724 
 
 
-
 
NC_007964  Nham_0772  methyl-accepting chemotaxis sensory transducer  47.19 
 
 
561 aa  321  3e-86  Nitrobacter hamburgensis X14  Bacteria  normal  n/a   
 
 
-
 
NC_007643  Rru_A2484  chemotaxis sensory transducer  40.21 
 
 
563 aa  317  5e-85  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  0.1562  n/a   
 
 
-
 
NC_007643  Rru_A1408  chemotaxis sensory transducer  39.52 
 
 
568 aa  312  1e-83  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  0.591131  n/a   
 
 
-
 
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