More than 300 homologs were found in PanDaTox collection
for query gene RPC_1253 on replicon NC_007925
Organism: Rhodopseudomonas palustris BisB18



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_011004  Rpal_4941  methyl-accepting chemotaxis sensory transducer  72.27 
 
 
563 aa  764    Rhodopseudomonas palustris TIE-1  Bacteria  normal  0.396774  n/a   
 
 
-
 
NC_007778  RPB_4280  methyl-accepting chemotaxis sensory transducer  74.6 
 
 
563 aa  786    Rhodopseudomonas palustris HaA2  Bacteria  normal  normal 
 
 
-
 
NC_007925  RPC_1253  methyl-accepting chemotaxis sensory transducer  100 
 
 
567 aa  1136    Rhodopseudomonas palustris BisB18  Bacteria  normal  normal  0.010155 
 
 
-
 
NC_007925  RPC_3380  methyl-accepting chemotaxis sensory transducer  79.01 
 
 
567 aa  903    Rhodopseudomonas palustris BisB18  Bacteria  normal  normal  0.689596 
 
 
-
 
NC_009485  BBta_4464  methyl-accepting chemotaxis sensory transducer  62.55 
 
 
573 aa  589  1e-167  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.610641  normal  0.757777 
 
 
-
 
NC_009485  BBta_0969  methyl-accepting chemotaxis sensory transducer  68.61 
 
 
562 aa  490  1e-137  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.956339  normal  0.570918 
 
 
-
 
NC_007958  RPD_0065  chemotaxis sensory transducer  70.77 
 
 
688 aa  489  1e-137  Rhodopseudomonas palustris BisB5  Bacteria  normal  normal  0.0714339 
 
 
-
 
NC_011004  Rpal_3598  methyl-accepting chemotaxis sensory transducer  69.61 
 
 
672 aa  483  1e-135  Rhodopseudomonas palustris TIE-1  Bacteria  normal  n/a   
 
 
-
 
NC_007925  RPC_4407  methyl-accepting chemotaxis sensory transducer  69.09 
 
 
566 aa  483  1e-135  Rhodopseudomonas palustris BisB18  Bacteria  normal  normal  0.365939 
 
 
-
 
NC_007925  RPC_3804  methyl-accepting chemotaxis sensory transducer  74.46 
 
 
655 aa  479  1e-134  Rhodopseudomonas palustris BisB18  Bacteria  normal  0.772812  normal 
 
 
-
 
NC_007925  RPC_4406  methyl-accepting chemotaxis sensory transducer  68.31 
 
 
566 aa  479  1e-134  Rhodopseudomonas palustris BisB18  Bacteria  normal  normal  0.341232 
 
 
-
 
NC_007778  RPB_2358  methyl-accepting chemotaxis sensory transducer  68.59 
 
 
673 aa  478  1e-133  Rhodopseudomonas palustris HaA2  Bacteria  normal  normal  0.207811 
 
 
-
 
NC_007958  RPD_1918  chemotaxis sensory transducer  69.55 
 
 
688 aa  476  1e-133  Rhodopseudomonas palustris BisB5  Bacteria  normal  normal  0.537222 
 
 
-
 
NC_007778  RPB_2250  methyl-accepting chemotaxis sensory transducer  71.54 
 
 
670 aa  474  1e-132  Rhodopseudomonas palustris HaA2  Bacteria  normal  normal 
 
 
-
 
NC_007958  RPD_3107  chemotaxis sensory transducer  69.89 
 
 
674 aa  474  1e-132  Rhodopseudomonas palustris BisB5  Bacteria  normal  normal  0.0664997 
 
 
-
 
NC_007778  RPB_0192  methyl-accepting chemotaxis sensory transducer  71.03 
 
 
688 aa  468  1.0000000000000001e-131  Rhodopseudomonas palustris HaA2  Bacteria  normal  normal 
 
 
-
 
NC_007958  RPD_3547  chemotaxis sensory transducer  67.97 
 
 
566 aa  469  1.0000000000000001e-131  Rhodopseudomonas palustris BisB5  Bacteria  normal  normal 
 
 
-
 
NC_009485  BBta_6635  methyl-accepting chemotaxis protein  68.35 
 
 
565 aa  466  9.999999999999999e-131  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.459746  normal  0.104137 
 
 
-
 
NC_009485  BBta_6483  methyl-accepting chemotaxis protein  66.58 
 
 
565 aa  465  9.999999999999999e-131  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.877741  normal 
 
 
-
 
NC_007778  RPB_3545  methyl-accepting chemotaxis sensory transducer  70.62 
 
 
689 aa  468  9.999999999999999e-131  Rhodopseudomonas palustris HaA2  Bacteria  normal  0.457552  normal  0.598514 
 
 
-
 
NC_009485  BBta_2904  putative methyl-accepting chemotaxis protein  69.55 
 
 
568 aa  462  1e-129  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.481458  normal  0.283558 
 
 
-
 
NC_009485  BBta_1388  methyl-accepting chemotaxis sensory transducer  68.85 
 
 
656 aa  458  9.999999999999999e-129  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.0527529  normal  0.207734 
 
 
-
 
NC_007925  RPC_2744  methyl-accepting chemotaxis sensory transducer  69.44 
 
 
572 aa  461  9.999999999999999e-129  Rhodopseudomonas palustris BisB18  Bacteria  normal  0.696609  normal  0.585687 
 
 
-
 
NC_011004  Rpal_2025  methyl-accepting chemotaxis sensory transducer  69.54 
 
 
688 aa  459  9.999999999999999e-129  Rhodopseudomonas palustris TIE-1  Bacteria  normal  0.0110809  n/a   
 
 
-
 
NC_007925  RPC_2742  methyl-accepting chemotaxis sensory transducer  70.37 
 
 
560 aa  455  1e-127  Rhodopseudomonas palustris BisB18  Bacteria  normal  normal  0.429688 
 
 
-
 
NC_007925  RPC_3379  methyl-accepting chemotaxis sensory transducer  71.07 
 
 
587 aa  456  1e-127  Rhodopseudomonas palustris BisB18  Bacteria  normal  0.787169  normal 
 
 
-
 
NC_007958  RPD_0153  chemotaxis sensory transducer  69.6 
 
 
602 aa  452  1.0000000000000001e-126  Rhodopseudomonas palustris BisB5  Bacteria  normal  normal 
 
 
-
 
NC_007778  RPB_2983  methyl-accepting chemotaxis sensory transducer  68.19 
 
 
561 aa  449  1e-125  Rhodopseudomonas palustris HaA2  Bacteria  normal  normal  0.0323515 
 
 
-
 
NC_007925  RPC_1843  methyl-accepting chemotaxis sensory transducer  70.57 
 
 
568 aa  451  1e-125  Rhodopseudomonas palustris BisB18  Bacteria  normal  normal  0.618754 
 
 
-
 
NC_007925  RPC_2149  methyl-accepting chemotaxis sensory transducer  66.94 
 
 
675 aa  445  1.0000000000000001e-124  Rhodopseudomonas palustris BisB18  Bacteria  normal  normal  0.0391093 
 
 
-
 
NC_007925  RPC_4101  methyl-accepting chemotaxis sensory transducer  71.51 
 
 
698 aa  446  1.0000000000000001e-124  Rhodopseudomonas palustris BisB18  Bacteria  normal  normal 
 
 
-
 
NC_007958  RPD_0497  chemotaxis sensory transducer  66.58 
 
 
577 aa  445  1e-123  Rhodopseudomonas palustris BisB5  Bacteria  normal  normal 
 
 
-
 
NC_007958  RPD_0995  chemotaxis sensory transducer  66.93 
 
 
656 aa  442  1e-123  Rhodopseudomonas palustris BisB5  Bacteria  normal  0.880627  normal 
 
 
-
 
NC_007925  RPC_3378  methyl-accepting chemotaxis sensory transducer  68.73 
 
 
563 aa  441  9.999999999999999e-123  Rhodopseudomonas palustris BisB18  Bacteria  normal  0.104618  normal 
 
 
-
 
NC_007958  RPD_0994  chemotaxis sensory transducer  57.4 
 
 
656 aa  441  9.999999999999999e-123  Rhodopseudomonas palustris BisB5  Bacteria  normal  0.357708  normal 
 
 
-
 
NC_007958  RPD_2465  chemotaxis sensory transducer  67.57 
 
 
561 aa  439  9.999999999999999e-123  Rhodopseudomonas palustris BisB5  Bacteria  normal  0.5909  normal  0.697276 
 
 
-
 
NC_009485  BBta_2905  putative methyl-accepting chemotaxis protein  68.31 
 
 
542 aa  440  9.999999999999999e-123  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.234112  normal  0.211145 
 
 
-
 
NC_011004  Rpal_4118  methyl-accepting chemotaxis sensory transducer  64.46 
 
 
567 aa  437  1e-121  Rhodopseudomonas palustris TIE-1  Bacteria  normal  n/a   
 
 
-
 
NC_007925  RPC_1795  methyl-accepting chemotaxis sensory transducer  68.87 
 
 
561 aa  436  1e-121  Rhodopseudomonas palustris BisB18  Bacteria  normal  0.432423  normal  0.0230577 
 
 
-
 
NC_009485  BBta_7508  putative methyl-accepting chemotaxis protein (with a HAMP region)  68.29 
 
 
552 aa  434  1e-120  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.692825  normal 
 
 
-
 
NC_011004  Rpal_2757  methyl-accepting chemotaxis sensory transducer  67.77 
 
 
561 aa  432  1e-120  Rhodopseudomonas palustris TIE-1  Bacteria  normal  0.0630329  n/a   
 
 
-
 
NC_009485  BBta_6950  putative methyl-accepting chemotaxis receptor/sensory transducer  41.89 
 
 
661 aa  432  1e-120  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal 
 
 
-
 
NC_009485  BBta_2901  methyl-accepting chemotaxis sensory transducer  70.86 
 
 
674 aa  431  1e-119  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.14772  normal  0.22504 
 
 
-
 
NC_007925  RPC_3161  methyl-accepting chemotaxis sensory transducer  67.3 
 
 
731 aa  431  1e-119  Rhodopseudomonas palustris BisB18  Bacteria  normal  0.072786  normal 
 
 
-
 
NC_011004  Rpal_5172  methyl-accepting chemotaxis sensory transducer  66.05 
 
 
656 aa  429  1e-119  Rhodopseudomonas palustris TIE-1  Bacteria  normal  n/a   
 
 
-
 
NC_009485  BBta_2900  putative methyl-accepting chemotaxis receptor/sensory transducer (chemoreceptor)  68.57 
 
 
675 aa  427  1e-118  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.142675  normal  0.173139 
 
 
-
 
NC_007778  RPB_2961  methyl-accepting chemotaxis sensory transducer  68.28 
 
 
563 aa  427  1e-118  Rhodopseudomonas palustris HaA2  Bacteria  normal  normal 
 
 
-
 
NC_007925  RPC_3377  methyl-accepting chemotaxis sensory transducer  65.01 
 
 
563 aa  426  1e-118  Rhodopseudomonas palustris BisB18  Bacteria  normal  0.528008  normal 
 
 
-
 
NC_007958  RPD_3836  Cache, type 2  43.87 
 
 
661 aa  426  1e-118  Rhodopseudomonas palustris BisB5  Bacteria  normal  0.337162  normal 
 
 
-
 
NC_011004  Rpal_5120  methyl-accepting chemotaxis sensory transducer  67.87 
 
 
563 aa  423  1e-117  Rhodopseudomonas palustris TIE-1  Bacteria  normal  n/a   
 
 
-
 
NC_009485  BBta_2903  methyl-accepting chemotaxis sensory transducer  66.58 
 
 
568 aa  424  1e-117  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.335645  normal  0.0996392 
 
 
-
 
NC_011004  Rpal_5119  methyl-accepting chemotaxis sensory transducer  66.13 
 
 
563 aa  424  1e-117  Rhodopseudomonas palustris TIE-1  Bacteria  normal  n/a   
 
 
-
 
NC_007958  RPD_1857  chemotaxis sensory transducer  65.18 
 
 
563 aa  419  1e-116  Rhodopseudomonas palustris BisB5  Bacteria  normal  normal 
 
 
-
 
NC_011004  Rpal_4783  methyl-accepting chemotaxis sensory transducer  65.22 
 
 
730 aa  418  9.999999999999999e-116  Rhodopseudomonas palustris TIE-1  Bacteria  normal  n/a   
 
 
-
 
NC_010505  Mrad2831_1766  methyl-accepting chemotaxis sensory transducer  47.09 
 
 
575 aa  418  9.999999999999999e-116  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal 
 
 
-
 
NC_011004  Rpal_1871  methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor  62.53 
 
 
716 aa  417  9.999999999999999e-116  Rhodopseudomonas palustris TIE-1  Bacteria  normal  n/a   
 
 
-
 
NC_007778  RPB_2653  methyl-accepting chemotaxis sensory transducer  63.34 
 
 
691 aa  414  1e-114  Rhodopseudomonas palustris HaA2  Bacteria  decreased coverage  0.00184965  normal  0.0777916 
 
 
-
 
NC_007925  RPC_4580  methyl-accepting chemotaxis sensory transducer  64.46 
 
 
563 aa  412  1e-114  Rhodopseudomonas palustris BisB18  Bacteria  normal  0.174371  normal 
 
 
-
 
NC_009485  BBta_4269  putative methyl-accepting chemotaxis receptor/sensory transducer protein  67.22 
 
 
691 aa  410  1e-113  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal  0.35374 
 
 
-
 
NC_009485  BBta_0885  putative methyl-accepting chemotaxis protein  63.69 
 
 
691 aa  411  1e-113  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.493714  normal 
 
 
-
 
NC_009485  BBta_2906  putative methyl-accepting chemotaxis protein  65.54 
 
 
564 aa  410  1e-113  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.430156  normal  0.106702 
 
 
-
 
NC_009485  BBta_2908  methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor  53.45 
 
 
561 aa  410  1e-113  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal  0.07018 
 
 
-
 
NC_011004  Rpal_1830  methyl-accepting chemotaxis sensory transducer  64.75 
 
 
563 aa  410  1e-113  Rhodopseudomonas palustris TIE-1  Bacteria  normal  n/a   
 
 
-
 
NC_007778  RPB_0489  methyl-accepting chemotaxis sensory transducer  66.21 
 
 
564 aa  407  1.0000000000000001e-112  Rhodopseudomonas palustris HaA2  Bacteria  normal  0.301128  normal 
 
 
-
 
NC_009485  BBta_2902  methyl-accepting chemotaxis sensory transducer  67.4 
 
 
563 aa  407  1.0000000000000001e-112  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.32606  normal  0.0943242 
 
 
-
 
NC_009485  BBta_2907  putative methyl-accepting chemotaxis protein  69.14 
 
 
556 aa  405  1.0000000000000001e-112  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.835875  normal  0.0729634 
 
 
-
 
NC_007958  RPD_0337  chemotaxis sensory transducer  66.21 
 
 
563 aa  408  1.0000000000000001e-112  Rhodopseudomonas palustris BisB5  Bacteria  normal  0.760858  normal  0.789667 
 
 
-
 
NC_007643  Rru_A0158  methyl-accepting chemotaxis sensory transducer  44.06 
 
 
561 aa  403  1e-111  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  n/a   
 
 
-
 
NC_009485  BBta_2368  putative methyl-accepting chemotaxis receptor/sensory transducer precursor  62.26 
 
 
561 aa  402  1e-111  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal  0.280114 
 
 
-
 
NC_007778  RPB_1321  methyl-accepting chemotaxis sensory transducer  65.25 
 
 
730 aa  404  1e-111  Rhodopseudomonas palustris HaA2  Bacteria  normal  0.0177086  normal  0.260794 
 
 
-
 
NC_009485  BBta_1536  methyl-accepting chemotaxis protein  69.12 
 
 
716 aa  402  1e-111  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.566253  normal  0.284447 
 
 
-
 
NC_007925  RPC_4809  methyl-accepting chemotaxis sensory transducer  67.6 
 
 
563 aa  400  9.999999999999999e-111  Rhodopseudomonas palustris BisB18  Bacteria  normal  normal 
 
 
-
 
NC_009485  BBta_6717  methyl-accepting chemotaxis sensory transducer  62.7 
 
 
741 aa  398  1e-109  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.447835  normal  0.587139 
 
 
-
 
NC_007778  RPB_4286  methyl-accepting chemotaxis sensory transducer  63.07 
 
 
563 aa  399  1e-109  Rhodopseudomonas palustris HaA2  Bacteria  normal  normal 
 
 
-
 
NC_007958  RPD_0336  chemotaxis sensory transducer  66.49 
 
 
563 aa  396  1e-109  Rhodopseudomonas palustris BisB5  Bacteria  normal  normal 
 
 
-
 
NC_007406  Nwi_2996  methyl-accepting chemotaxis protein  60.15 
 
 
698 aa  393  1e-108  Nitrobacter winogradskyi Nb-255  Bacteria  normal  normal 
 
 
-
 
NC_007964  Nham_1080  methyl-accepting chemotaxis sensory transducer  62.74 
 
 
698 aa  393  1e-108  Nitrobacter hamburgensis X14  Bacteria  normal  0.0139762  n/a   
 
 
-
 
NC_007778  RPB_3610  methyl-accepting chemotaxis sensory transducer  60.82 
 
 
563 aa  393  1e-108  Rhodopseudomonas palustris HaA2  Bacteria  normal  0.735593  normal  0.400148 
 
 
-
 
NC_011004  Rpal_0233  methyl-accepting chemotaxis sensory transducer  67.58 
 
 
563 aa  392  1e-108  Rhodopseudomonas palustris TIE-1  Bacteria  normal  n/a   
 
 
-
 
NC_007925  RPC_0061  methyl-accepting chemotaxis sensory transducer  61.52 
 
 
674 aa  393  1e-108  Rhodopseudomonas palustris BisB18  Bacteria  normal  normal 
 
 
-
 
NC_010172  Mext_0820  chemotaxis sensory transducer  45.08 
 
 
608 aa  387  1e-106  Methylobacterium extorquens PA1  Bacteria  normal  0.254614  normal  0.216431 
 
 
-
 
NC_007958  RPD_1867  chemotaxis sensory transducer  59.42 
 
 
714 aa  387  1e-106  Rhodopseudomonas palustris BisB5  Bacteria  normal  normal  0.133032 
 
 
-
 
NC_009485  BBta_0330  putative methyl-accepting chemotaxis receptor/sensory transducer  57.68 
 
 
676 aa  383  1e-105  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal  0.0869057 
 
 
-
 
NC_009485  BBta_2367  putative methyl-accepting chemotaxis receptor/sensory transducer precursor  64.41 
 
 
562 aa  384  1e-105  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal  0.287749 
 
 
-
 
NC_011004  Rpal_4787  methyl-accepting chemotaxis sensory transducer  42.66 
 
 
561 aa  383  1e-105  Rhodopseudomonas palustris TIE-1  Bacteria  normal  0.708956  n/a   
 
 
-
 
NC_007925  RPC_4104  methyl-accepting chemotaxis sensory transducer  44.7 
 
 
586 aa  385  1e-105  Rhodopseudomonas palustris BisB18  Bacteria  normal  0.783692  normal 
 
 
-
 
NC_007778  RPB_1317  methyl-accepting chemotaxis sensory transducer  43.32 
 
 
560 aa  382  1e-104  Rhodopseudomonas palustris HaA2  Bacteria  normal  normal  0.14669 
 
 
-
 
NC_011757  Mchl_0779  methyl-accepting chemotaxis sensory transducer with Cache sensor  45.44 
 
 
558 aa  379  1e-104  Methylobacterium chloromethanicum CM4  Bacteria  normal  0.0546434  normal  0.151916 
 
 
-
 
NC_007643  Rru_A1160  chemotaxis sensory transducer  42.4 
 
 
559 aa  379  1e-103  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  n/a   
 
 
-
 
NC_011004  Rpal_4271  methyl-accepting chemotaxis sensory transducer  58.52 
 
 
567 aa  375  1e-102  Rhodopseudomonas palustris TIE-1  Bacteria  normal  n/a   
 
 
-
 
NC_007778  RPB_1316  methyl-accepting chemotaxis sensory transducer  43.69 
 
 
561 aa  373  1e-102  Rhodopseudomonas palustris HaA2  Bacteria  normal  normal  0.234166 
 
 
-
 
NC_009485  BBta_2799  putative receptor/sensory transducer  65.42 
 
 
707 aa  374  1e-102  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.0655652  normal 
 
 
-
 
NC_007925  RPC_2846  methyl-accepting chemotaxis sensory transducer  43.97 
 
 
565 aa  375  1e-102  Rhodopseudomonas palustris BisB18  Bacteria  normal  0.430745  normal 
 
 
-
 
NC_007964  Nham_1045  methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor  60.23 
 
 
564 aa  372  1e-101  Nitrobacter hamburgensis X14  Bacteria  normal  n/a   
 
 
-
 
NC_007643  Rru_A2366  methyl-accepting chemotaxis sensory transducer  39.82 
 
 
560 aa  371  1e-101  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  0.196109  n/a   
 
 
-
 
NC_007925  RPC_2457  methyl-accepting chemotaxis sensory transducer  59.5 
 
 
665 aa  369  1e-101  Rhodopseudomonas palustris BisB18  Bacteria  normal  0.0375918  normal  0.509707 
 
 
-
 
NC_009485  BBta_1840  methyl-accepting chemotaxis sensory transducer  40.04 
 
 
561 aa  366  1e-100  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal  0.745103 
 
 
-
 
NC_007406  Nwi_0530  methyl-accepting chemotaxis protein  58.5 
 
 
569 aa  365  1e-99  Nitrobacter winogradskyi Nb-255  Bacteria  normal  0.667624  normal 
 
 
-
 
NC_011004  Rpal_2142  methyl-accepting chemotaxis sensory transducer  70.38 
 
 
428 aa  364  2e-99  Rhodopseudomonas palustris TIE-1  Bacteria  normal  0.293169  n/a   
 
 
-
 
NC_010511  M446_2738  methyl-accepting chemotaxis sensory transducer  42.73 
 
 
562 aa  363  4e-99  Methylobacterium sp. 4-46  Bacteria  normal  0.809654  normal  0.020868 
 
 
-
 
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