Gene RPC_1253 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRPC_1253 
Symbol 
ID3972046 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRhodopseudomonas palustris BisB18 
KingdomBacteria 
Replicon accessionNC_007925 
Strand
Start bp1370104 
End bp1371807 
Gene Length1704 bp 
Protein Length567 aa 
Translation table11 
GC content65% 
IMG OID637924363 
Productmethyl-accepting chemotaxis sensory transducer 
Protein accessionYP_531134 
Protein GI90422764 
COG category[N] Cell motility
[T] Signal transduction mechanisms 
COG ID[COG0840] Methyl-accepting chemotaxis protein
[COG4564] Signal transduction histidine kinase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones16 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.010155 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCCGCCTG CGCTATCGAC TGGGTTCAGA TTCACCATCA GCCGCAAGAT TTACGTTCTG 
ATCGGTCTCG GCTTTGTCGG GCTGCTGGGG ATCGCATTTC TGGATTCCAG CGAACTCGGG
TCCGGCTTGA AGCAGCAGAA GCAGGTCGAG CTGCAACGGC TCACCGAACT CGCCGTCGCT
ATCGTCAAGG ACGAATACGC CACGGCTCAA AGCGGCGAGA TATCGGTCGC CGAAGCGCAA
AAGCGCGCGC AGGCGCGAGT GGCGACCATG CGCTATGGCA ACAATGATTA CTTCTTCGTC
ACCGACATGC AGGGCAGGAT GCTGATGCAC CCGGTCACCG CGGGTTTGGT CGGGACGGAC
ATGTCGCATA CCAAGGACCC GAACGGCAGA CGTTTCATCG CCGAAATGGT CGACGCGGTG
AAGCAAAAGG GCTCCGGTTT CGTCGACTAC AGCTGGGCCA AACCGGGCTC CAACAAGCCG
CAGCCGAAGT TGTCCTACGC CGCCGGTTTT GCGCCGTGGG GCTGGGTGAT CACGACCGGC
GTCTATATCG ACGATCTCGA TGCGCAGACC TGGGCTTCCA CGCAGCGCTC GCTGATCGCC
GCGACCGTCA TTCTGCTGAT CACGCTCGCG GTCTCGGTCT TCATGGCCGG CCGCATCACC
AAACCCTTGC ACCGGATGAC CGATGCGATG AAGGCACTCG CCGGCGGCCG GCTCGACGTC
GCGATACCCG GCGTCGGTCG CAACGACGAG ATCGGCGAGA TGGCCGAGGC CGTCGCAGTG
TTCAAGACCA ACGCGGTGGA GCGCCAGCGC CTGGAAGCCG AACAGAAAGA ACTGGAGGCG
CGCGCCGCCG CGCAGCGCAA GGCCGACACC AGTCGGCTCG CCGACGACTT CGAAACCGCG
GTCGGCGAGA TCATCGAAAC CGTAACCTCG GCGTCCAACG AATTGGAGGC CTCCGCCACC
ACGCTGACCA CCACCGCGGC GCGTTCGCAG CAACTCGCGA CGATGGTGGC GTCGGCCTCC
GAAGAGGCTT CCACCAATGT GCAGTCGGTG GCCTCGGCCA CCGAGGAGAT GAGTTCGTCG
GTCGACGAGA TCAGCCGCCA GGTGCAGGAC TCCGCCCGCA TCGCGCACGA CGCGGTGACG
CAGGCCCGCA TCACCAACGA CCGGGTCGGC GAATTGTCGA AGGCGGCGGC GCGGATCGGC
GACGTCGTGG AGTTGATCAA CACCATCGCC GGCCAGACCA ATCTCTTGGC GCTGAACGCC
ACCATCGAAG CCGCCCGCGC CGGCGCGGCG GGGCGCGGCT TCGCCGTGGT CGCGAGCGAG
GTCAAGGCGC TGGCGGAGCA GACCGCCAAG GCGACCGGCG AGATCGGCCA GCAGATCACC
GGCATTCAGA GCGCCACGCG CGACTCCGTC GCCGCGATCG AGGAGATCAG CGCCACCATC
GGCAAGATGT CGGAGATCGC CTCGACCATC GCCTCGGCGG TAGAGGAGCA GGGCGCGGCG
ACCCGCGAGA TTTCACGCAA CGTGCAGCAG GCCGCGCAAG GCACCAGCCA GGTCAGTTCG
AACATTTCCG ATGTGCAACA CGGCGCCGGC GAAACCGGGT CGGCATCGGC GCAGGTGCTG
TCGGCGGCGC AGGTGCTGTC GCGCGACAGC AGCAGGCTGA AGACCGAGGT CAGCAGATTC
CTGCACAGCG TCCGCGCGGC GTAA
 
Protein sequence
MPPALSTGFR FTISRKIYVL IGLGFVGLLG IAFLDSSELG SGLKQQKQVE LQRLTELAVA 
IVKDEYATAQ SGEISVAEAQ KRAQARVATM RYGNNDYFFV TDMQGRMLMH PVTAGLVGTD
MSHTKDPNGR RFIAEMVDAV KQKGSGFVDY SWAKPGSNKP QPKLSYAAGF APWGWVITTG
VYIDDLDAQT WASTQRSLIA ATVILLITLA VSVFMAGRIT KPLHRMTDAM KALAGGRLDV
AIPGVGRNDE IGEMAEAVAV FKTNAVERQR LEAEQKELEA RAAAQRKADT SRLADDFETA
VGEIIETVTS ASNELEASAT TLTTTAARSQ QLATMVASAS EEASTNVQSV ASATEEMSSS
VDEISRQVQD SARIAHDAVT QARITNDRVG ELSKAAARIG DVVELINTIA GQTNLLALNA
TIEAARAGAA GRGFAVVASE VKALAEQTAK ATGEIGQQIT GIQSATRDSV AAIEEISATI
GKMSEIASTI ASAVEEQGAA TREISRNVQQ AAQGTSQVSS NISDVQHGAG ETGSASAQVL
SAAQVLSRDS SRLKTEVSRF LHSVRAA