More than 300 homologs were found in PanDaTox collection
for query gene RPD_3836 on replicon NC_007958
Organism: Rhodopseudomonas palustris BisB5



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_009485  BBta_6950  putative methyl-accepting chemotaxis receptor/sensory transducer  58.85 
 
 
661 aa  734    Bradyrhizobium sp. BTAi1  Bacteria  normal  normal 
 
 
-
 
NC_007958  RPD_3836  Cache, type 2  100 
 
 
661 aa  1322    Rhodopseudomonas palustris BisB5  Bacteria  normal  0.337162  normal 
 
 
-
 
NC_011004  Rpal_4941  methyl-accepting chemotaxis sensory transducer  46.67 
 
 
563 aa  466  9.999999999999999e-131  Rhodopseudomonas palustris TIE-1  Bacteria  normal  0.396774  n/a   
 
 
-
 
NC_007925  RPC_3380  methyl-accepting chemotaxis sensory transducer  43.06 
 
 
567 aa  461  9.999999999999999e-129  Rhodopseudomonas palustris BisB18  Bacteria  normal  normal  0.689596 
 
 
-
 
NC_007778  RPB_4280  methyl-accepting chemotaxis sensory transducer  42.73 
 
 
563 aa  434  1e-120  Rhodopseudomonas palustris HaA2  Bacteria  normal  normal 
 
 
-
 
NC_007925  RPC_1253  methyl-accepting chemotaxis sensory transducer  43.87 
 
 
567 aa  411  1e-113  Rhodopseudomonas palustris BisB18  Bacteria  normal  normal  0.010155 
 
 
-
 
NC_009485  BBta_4464  methyl-accepting chemotaxis sensory transducer  39.47 
 
 
573 aa  327  4.0000000000000003e-88  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.610641  normal  0.757777 
 
 
-
 
NC_007643  Rru_A2366  methyl-accepting chemotaxis sensory transducer  38 
 
 
560 aa  322  9.999999999999999e-87  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  0.196109  n/a   
 
 
-
 
NC_010505  Mrad2831_1766  methyl-accepting chemotaxis sensory transducer  42.8 
 
 
575 aa  319  9e-86  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal 
 
 
-
 
NC_009483  Gura_3394  methyl-accepting chemotaxis sensory transducer  33.06 
 
 
664 aa  305  2.0000000000000002e-81  Geobacter uraniireducens Rf4  Bacteria  decreased coverage  0.00000171268  n/a   
 
 
-
 
NC_007643  Rru_A0632  chemotaxis sensory transducer  36.57 
 
 
736 aa  299  1e-79  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  0.180969  n/a   
 
 
-
 
NC_007643  Rru_A0158  methyl-accepting chemotaxis sensory transducer  35.62 
 
 
561 aa  290  6e-77  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  n/a   
 
 
-
 
NC_010511  M446_2738  methyl-accepting chemotaxis sensory transducer  37.16 
 
 
562 aa  288  2.9999999999999996e-76  Methylobacterium sp. 4-46  Bacteria  normal  0.809654  normal  0.020868 
 
 
-
 
NC_010725  Mpop_1048  methyl-accepting chemotaxis sensory transducer  36.66 
 
 
559 aa  278  2e-73  Methylobacterium populi BJ001  Bacteria  normal  normal  0.165383 
 
 
-
 
NC_007643  Rru_A1160  chemotaxis sensory transducer  34.64 
 
 
559 aa  278  3e-73  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  n/a   
 
 
-
 
NC_013174  Jden_0673  methyl-accepting chemotaxis sensory transducer with Cache sensor  36.2 
 
 
533 aa  276  1.0000000000000001e-72  Jonesia denitrificans DSM 20603  Bacteria  normal  normal  0.349323 
 
 
-
 
NC_011369  Rleg2_2181  methyl-accepting chemotaxis sensory transducer  31.09 
 
 
606 aa  273  8.000000000000001e-72  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  0.440189  normal  0.953277 
 
 
-
 
NC_012850  Rleg_2464  methyl-accepting chemotaxis sensory transducer with Cache sensor  33.39 
 
 
605 aa  272  1e-71  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal 
 
 
-
 
NC_009485  BBta_0644  putative methyl-accepting chemotaxis receptor/sensory transducer  34.59 
 
 
565 aa  270  8e-71  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal 
 
 
-
 
NC_007778  RPB_1317  methyl-accepting chemotaxis sensory transducer  34.86 
 
 
560 aa  270  8.999999999999999e-71  Rhodopseudomonas palustris HaA2  Bacteria  normal  normal  0.14669 
 
 
-
 
NC_009486  Tpet_1365  methyl-accepting chemotaxis sensory transducer  31.42 
 
 
566 aa  269  1e-70  Thermotoga petrophila RKU-1  Bacteria  normal  n/a   
 
 
-
 
NC_010483  TRQ2_1321  methyl-accepting chemotaxis sensory transducer  31.84 
 
 
566 aa  268  2.9999999999999995e-70  Thermotoga sp. RQ2  Bacteria  decreased coverage  0.00082247  n/a   
 
 
-
 
NC_011004  Rpal_4787  methyl-accepting chemotaxis sensory transducer  34.26 
 
 
561 aa  265  2e-69  Rhodopseudomonas palustris TIE-1  Bacteria  normal  0.708956  n/a   
 
 
-
 
NC_009636  Smed_1613  methyl-accepting chemotaxis sensory transducer  33.1 
 
 
603 aa  265  2e-69  Sinorhizobium medicae WSM419  Bacteria  normal  0.183078  normal  0.160096 
 
 
-
 
NC_009457  VC0395_A2659  methyl-accepting chemotaxis protein  34.99 
 
 
556 aa  262  1e-68  Vibrio cholerae O395  Bacteria  normal  n/a   
 
 
-
 
NC_011757  Mchl_0779  methyl-accepting chemotaxis sensory transducer with Cache sensor  36.02 
 
 
558 aa  262  2e-68  Methylobacterium chloromethanicum CM4  Bacteria  normal  0.0546434  normal  0.151916 
 
 
-
 
NC_010725  Mpop_0741  methyl-accepting chemotaxis sensory transducer  36.83 
 
 
558 aa  261  3e-68  Methylobacterium populi BJ001  Bacteria  normal  0.532986  normal 
 
 
-
 
NC_007925  RPC_2846  methyl-accepting chemotaxis sensory transducer  35.15 
 
 
565 aa  261  3e-68  Rhodopseudomonas palustris BisB18  Bacteria  normal  0.430745  normal 
 
 
-
 
NC_010172  Mext_0820  chemotaxis sensory transducer  35.42 
 
 
608 aa  261  4e-68  Methylobacterium extorquens PA1  Bacteria  normal  0.254614  normal  0.216431 
 
 
-
 
NC_012791  Vapar_4188  methyl-accepting chemotaxis sensory transducer with Cache sensor  33.27 
 
 
566 aa  260  5.0000000000000005e-68  Variovorax paradoxus S110  Bacteria  normal  0.210427  n/a   
 
 
-
 
NC_009485  BBta_0869  putative methyl-accepting chemotaxis receptor/sensory transducer  38.85 
 
 
662 aa  258  2e-67  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal  0.0914748 
 
 
-
 
NC_002939  GSU0400  methyl-accepting chemotaxis protein  34.56 
 
 
549 aa  258  3e-67  Geobacter sulfurreducens PCA  Bacteria  normal  0.431065  n/a   
 
 
-
 
NC_007925  RPC_4104  methyl-accepting chemotaxis sensory transducer  33.65 
 
 
586 aa  258  3e-67  Rhodopseudomonas palustris BisB18  Bacteria  normal  0.783692  normal 
 
 
-
 
NC_008752  Aave_2643  methyl-accepting chemotaxis sensory transducer  36.59 
 
 
541 aa  257  4e-67  Acidovorax citrulli AAC00-1  Bacteria  normal  0.0238907  normal  0.0164957 
 
 
-
 
NC_007005  Psyr_1776  histidine kinase, HAMP region: chemotaxis sensory transducer  33.52 
 
 
543 aa  255  2.0000000000000002e-66  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  normal  0.363817 
 
 
-
 
NC_007643  Rru_A1583  chemotaxis sensory transducer  33.58 
 
 
583 aa  253  5.000000000000001e-66  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  0.105257  n/a   
 
 
-
 
NC_007643  Rru_A1584  chemotaxis sensory transducer  33.71 
 
 
556 aa  253  7e-66  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  0.596272  n/a   
 
 
-
 
NC_007958  RPD_3904  chemotaxis sensory transducer  32.85 
 
 
566 aa  253  9.000000000000001e-66  Rhodopseudomonas palustris BisB5  Bacteria  normal  normal 
 
 
-
 
NC_007492  Pfl01_2601  chemotaxis sensory transducer  32.49 
 
 
569 aa  252  1e-65  Pseudomonas fluorescens Pf0-1  Bacteria  normal  0.441915  normal  0.36116 
 
 
-
 
NC_009485  BBta_1840  methyl-accepting chemotaxis sensory transducer  32.74 
 
 
561 aa  252  1e-65  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal  0.745103 
 
 
-
 
NC_007778  RPB_1316  methyl-accepting chemotaxis sensory transducer  34.08 
 
 
561 aa  248  2e-64  Rhodopseudomonas palustris HaA2  Bacteria  normal  normal  0.234166 
 
 
-
 
NC_011004  Rpal_4271  methyl-accepting chemotaxis sensory transducer  42.82 
 
 
567 aa  246  8e-64  Rhodopseudomonas palustris TIE-1  Bacteria  normal  n/a   
 
 
-
 
NC_009675  Anae109_2874  methyl-accepting chemotaxis sensory transducer  33.8 
 
 
563 aa  245  1.9999999999999999e-63  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  0.872696  normal  0.485865 
 
 
-
 
NC_007643  Rru_A2460  chemotaxis sensory transducer  32.28 
 
 
565 aa  244  5e-63  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  n/a   
 
 
-
 
NC_010814  Glov_0461  methyl-accepting chemotaxis sensory transducer  32.91 
 
 
569 aa  243  6e-63  Geobacter lovleyi SZ  Bacteria  normal  n/a   
 
 
-
 
NC_007958  RPD_0995  chemotaxis sensory transducer  42.35 
 
 
656 aa  243  6e-63  Rhodopseudomonas palustris BisB5  Bacteria  normal  0.880627  normal 
 
 
-
 
NC_007517  Gmet_2825  methyl-accepting chemotaxis sensory transducer  32.42 
 
 
570 aa  242  1e-62  Geobacter metallireducens GS-15  Bacteria  normal  hitchhiker  0.000443347 
 
 
-
 
NC_007925  RPC_4105  methyl-accepting chemotaxis sensory transducer  34.06 
 
 
561 aa  242  1e-62  Rhodopseudomonas palustris BisB18  Bacteria  normal  0.916882  normal 
 
 
-
 
NC_010505  Mrad2831_1828  methyl-accepting chemotaxis sensory transducer  35.52 
 
 
579 aa  242  2e-62  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal  0.0132835 
 
 
-
 
NC_009485  BBta_6483  methyl-accepting chemotaxis protein  36.91 
 
 
565 aa  242  2e-62  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.877741  normal 
 
 
-
 
NC_012034  Athe_1130  methyl-accepting chemotaxis sensory transducer with Cache sensor  30.39 
 
 
571 aa  241  2.9999999999999997e-62  Anaerocellum thermophilum DSM 6725  Bacteria  normal  n/a   
 
 
-
 
NC_011891  A2cp1_3858  methyl-accepting chemotaxis sensory transducer with Cache sensor  33.21 
 
 
526 aa  241  2.9999999999999997e-62  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  normal  n/a   
 
 
-
 
NC_009439  Pmen_2174  methyl-accepting chemotaxis sensory transducer  34.91 
 
 
544 aa  239  9e-62  Pseudomonas mendocina ymp  Bacteria  normal  decreased coverage  0.00506259 
 
 
-
 
NC_011145  AnaeK_3775  methyl-accepting chemotaxis sensory transducer  32.84 
 
 
526 aa  239  1e-61  Anaeromyxobacter sp. K  Bacteria  normal  0.268134  n/a   
 
 
-
 
NC_007498  Pcar_1985  methyl-accepting chemotaxis protein (MCP)  32.42 
 
 
715 aa  239  2e-61  Pelobacter carbinolicus DSM 2380  Bacteria  normal  n/a   
 
 
-
 
NC_007952  Bxe_B2628  methyl-accepting chemotaxis sensory transducer  31.62 
 
 
515 aa  238  2e-61  Burkholderia xenovorans LB400  Bacteria  hitchhiker  0.0020256  hitchhiker  0.000579335 
 
 
-
 
NC_007958  RPD_0994  chemotaxis sensory transducer  39.68 
 
 
656 aa  238  2e-61  Rhodopseudomonas palustris BisB5  Bacteria  normal  0.357708  normal 
 
 
-
 
NC_007760  Adeh_3718  methyl-accepting chemotaxis sensory transducer  34.5 
 
 
526 aa  237  4e-61  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  normal  0.734846  n/a   
 
 
-
 
NC_010501  PputW619_2757  methyl-accepting chemotaxis sensory transducer  31.26 
 
 
544 aa  236  8e-61  Pseudomonas putida W619  Bacteria  normal  normal 
 
 
-
 
NC_008576  Mmc1_2492  methyl-accepting chemotaxis sensory transducer  28.11 
 
 
787 aa  235  2.0000000000000002e-60  Magnetococcus sp. MC-1  Bacteria  decreased coverage  0.0000288595  normal  0.31948 
 
 
-
 
NC_009485  BBta_1388  methyl-accepting chemotaxis sensory transducer  42.82 
 
 
656 aa  235  2.0000000000000002e-60  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.0527529  normal  0.207734 
 
 
-
 
NC_007958  RPD_1025  methyl-accepting chemotaxis sensory transducer  44.67 
 
 
681 aa  235  2.0000000000000002e-60  Rhodopseudomonas palustris BisB5  Bacteria  normal  normal 
 
 
-
 
NC_009512  Pput_2828  methyl-accepting chemotaxis sensory transducer  33 
 
 
544 aa  235  3e-60  Pseudomonas putida F1  Bacteria  normal  normal 
 
 
-
 
NC_008576  Mmc1_2392  methyl-accepting chemotaxis sensory transducer  28.24 
 
 
787 aa  234  4.0000000000000004e-60  Magnetococcus sp. MC-1  Bacteria  normal  0.467356  normal  0.0918963 
 
 
-
 
NC_007912  Sde_2316  putative methyl-accepting chemotaxis sensory transducer  30.43 
 
 
548 aa  233  7.000000000000001e-60  Saccharophagus degradans 2-40  Bacteria  normal  normal  0.0208981 
 
 
-
 
NC_002939  GSU1030  methyl-accepting chemotaxis protein  33.99 
 
 
549 aa  232  1e-59  Geobacter sulfurreducens PCA  Bacteria  normal  n/a   
 
 
-
 
NC_011004  Rpal_4788  methyl-accepting chemotaxis sensory transducer  32.64 
 
 
561 aa  232  1e-59  Rhodopseudomonas palustris TIE-1  Bacteria  normal  n/a   
 
 
-
 
NC_007925  RPC_3804  methyl-accepting chemotaxis sensory transducer  40.92 
 
 
655 aa  233  1e-59  Rhodopseudomonas palustris BisB18  Bacteria  normal  0.772812  normal 
 
 
-
 
NC_002947  PP_2861  methyl-accepting chemotaxis sensory transducer  32.18 
 
 
544 aa  232  2e-59  Pseudomonas putida KT2440  Bacteria  normal  normal  0.445183 
 
 
-
 
NC_010338  Caul_1387  methyl-accepting chemotaxis sensory transducer  32.57 
 
 
615 aa  232  2e-59  Caulobacter sp. K31  Bacteria  normal  normal 
 
 
-
 
NC_011004  Rpal_5172  methyl-accepting chemotaxis sensory transducer  41.08 
 
 
656 aa  232  2e-59  Rhodopseudomonas palustris TIE-1  Bacteria  normal  n/a   
 
 
-
 
NC_007958  RPD_0153  chemotaxis sensory transducer  41.46 
 
 
602 aa  231  2e-59  Rhodopseudomonas palustris BisB5  Bacteria  normal  normal 
 
 
-
 
NC_008576  Mmc1_3547  methyl-accepting chemotaxis sensory transducer  28.39 
 
 
676 aa  231  4e-59  Magnetococcus sp. MC-1  Bacteria  normal  0.126617  normal 
 
 
-
 
NC_007778  RPB_1716  methyl-accepting chemotaxis sensory transducer  44.77 
 
 
564 aa  229  9e-59  Rhodopseudomonas palustris HaA2  Bacteria  normal  0.0822312  normal  0.62395 
 
 
-
 
NC_007925  RPC_1709  methyl-accepting chemotaxis sensory transducer  40.49 
 
 
568 aa  228  3e-58  Rhodopseudomonas palustris BisB18  Bacteria  normal  0.55655  normal  0.12205 
 
 
-
 
NC_007925  RPC_3379  methyl-accepting chemotaxis sensory transducer  41.98 
 
 
587 aa  228  3e-58  Rhodopseudomonas palustris BisB18  Bacteria  normal  0.787169  normal 
 
 
-
 
NC_009485  BBta_6635  methyl-accepting chemotaxis protein  44.05 
 
 
565 aa  227  4e-58  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.459746  normal  0.104137 
 
 
-
 
NC_011146  Gbem_1044  methyl-accepting chemotaxis sensory transducer  32.31 
 
 
584 aa  227  6e-58  Geobacter bemidjiensis Bem  Bacteria  normal  n/a   
 
 
-
 
NC_003910  CPS_4964  methyl-accepting chemotaxis protein  29.16 
 
 
545 aa  227  7e-58  Colwellia psychrerythraea 34H  Bacteria  normal  n/a   
 
 
-
 
NC_008751  Dvul_2947  methyl-accepting chemotaxis sensory transducer  34.48 
 
 
749 aa  227  7e-58  Desulfovibrio vulgaris DP4  Bacteria  normal  0.732257  normal 
 
 
-
 
NC_009485  BBta_0969  methyl-accepting chemotaxis sensory transducer  37.47 
 
 
562 aa  226  9e-58  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.956339  normal  0.570918 
 
 
-
 
NC_007519  Dde_2734  methyl-accepting chemotaxis sensory transducer  33.8 
 
 
751 aa  226  1e-57  Desulfovibrio desulfuricans subsp. desulfuricans str. G20  Bacteria  normal  n/a   
 
 
-
 
NC_010322  PputGB1_2920  methyl-accepting chemotaxis sensory transducer  34.29 
 
 
544 aa  226  1e-57  Pseudomonas putida GB-1  Bacteria  normal  normal 
 
 
-
 
NC_007778  RPB_0914  methyl-accepting chemotaxis sensory transducer  43.3 
 
 
689 aa  225  2e-57  Rhodopseudomonas palustris HaA2  Bacteria  normal  normal  0.497103 
 
 
-
 
NC_007925  RPC_4527  methyl-accepting chemotaxis sensory transducer  42.13 
 
 
667 aa  225  2e-57  Rhodopseudomonas palustris BisB18  Bacteria  normal  normal  0.527831 
 
 
-
 
NC_007958  RPD_3581  methyl-accepting chemotaxis sensory transducer  42.15 
 
 
567 aa  225  2e-57  Rhodopseudomonas palustris BisB5  Bacteria  normal  0.0981346  normal  0.985512 
 
 
-
 
NC_012918  GM21_3217  methyl-accepting chemotaxis sensory transducer with Cache sensor  31.86 
 
 
584 aa  224  3e-57  Geobacter sp. M21  Bacteria  n/a    normal  0.480757 
 
 
-
 
NC_007517  Gmet_1078  methyl-accepting chemotaxis sensory transducer  32.68 
 
 
587 aa  224  3e-57  Geobacter metallireducens GS-15  Bacteria  normal  hitchhiker  0.00101669 
 
 
-
 
NC_009485  BBta_0575  methyl-accepting chemotaxis sensory transducer  43.03 
 
 
681 aa  224  3e-57  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal 
 
 
-
 
NC_007643  Rru_A0755  chemotaxis sensory transducer  45.64 
 
 
567 aa  224  4.9999999999999996e-57  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  n/a   
 
 
-
 
NC_007958  RPD_0065  chemotaxis sensory transducer  40.65 
 
 
688 aa  223  6e-57  Rhodopseudomonas palustris BisB5  Bacteria  normal  normal  0.0714339 
 
 
-
 
NC_009438  Sputcn32_0672  methyl-accepting chemotaxis sensory transducer  30.55 
 
 
568 aa  223  7e-57  Shewanella putrefaciens CN-32  Bacteria  normal  n/a   
 
 
-
 
NC_007406  Nwi_2996  methyl-accepting chemotaxis protein  40.44 
 
 
698 aa  223  9e-57  Nitrobacter winogradskyi Nb-255  Bacteria  normal  normal 
 
 
-
 
NC_007964  Nham_1080  methyl-accepting chemotaxis sensory transducer  41.76 
 
 
698 aa  223  9e-57  Nitrobacter hamburgensis X14  Bacteria  normal  0.0139762  n/a   
 
 
-
 
NC_011004  Rpal_3598  methyl-accepting chemotaxis sensory transducer  36.14 
 
 
672 aa  222  9.999999999999999e-57  Rhodopseudomonas palustris TIE-1  Bacteria  normal  n/a   
 
 
-
 
NC_011769  DvMF_1057  methyl-accepting chemotaxis sensory transducer with Cache sensor  32.98 
 
 
634 aa  222  1.9999999999999999e-56  Desulfovibrio vulgaris str. 'Miyazaki F'  Bacteria  n/a    normal 
 
 
-
 
NC_007778  RPB_2358  methyl-accepting chemotaxis sensory transducer  39.24 
 
 
673 aa  221  1.9999999999999999e-56  Rhodopseudomonas palustris HaA2  Bacteria  normal  normal  0.207811 
 
 
-
 
NC_008751  Dvul_0662  methyl-accepting chemotaxis sensory transducer  34.35 
 
 
626 aa  221  3e-56  Desulfovibrio vulgaris DP4  Bacteria  normal  0.436733  normal 
 
 
-
 
NC_007298  Daro_2728  chemotaxis sensory transducer  31.33 
 
 
544 aa  221  3.9999999999999997e-56  Dechloromonas aromatica RCB  Bacteria  hitchhiker  0.00837045  normal  0.306222 
 
 
-
 
NC_011004  Rpal_5144  methyl-accepting chemotaxis sensory transducer  43.55 
 
 
686 aa  221  5e-56  Rhodopseudomonas palustris TIE-1  Bacteria  normal  n/a   
 
 
-
 
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