More than 300 homologs were found in PanDaTox collection
for query gene RPB_0489 on replicon NC_007778
Organism: Rhodopseudomonas palustris HaA2



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_009485  BBta_2368  putative methyl-accepting chemotaxis receptor/sensory transducer precursor  61.63 
 
 
561 aa  669    Bradyrhizobium sp. BTAi1  Bacteria  normal  normal  0.280114 
 
 
-
 
NC_011004  Rpal_1830  methyl-accepting chemotaxis sensory transducer  65.78 
 
 
563 aa  684    Rhodopseudomonas palustris TIE-1  Bacteria  normal  n/a   
 
 
-
 
NC_011004  Rpal_5119  methyl-accepting chemotaxis sensory transducer  67.73 
 
 
563 aa  697    Rhodopseudomonas palustris TIE-1  Bacteria  normal  n/a   
 
 
-
 
NC_007778  RPB_0489  methyl-accepting chemotaxis sensory transducer  100 
 
 
564 aa  1123    Rhodopseudomonas palustris HaA2  Bacteria  normal  0.301128  normal 
 
 
-
 
NC_007778  RPB_4286  methyl-accepting chemotaxis sensory transducer  62.77 
 
 
563 aa  661    Rhodopseudomonas palustris HaA2  Bacteria  normal  normal 
 
 
-
 
NC_007925  RPC_3377  methyl-accepting chemotaxis sensory transducer  63.83 
 
 
563 aa  682    Rhodopseudomonas palustris BisB18  Bacteria  normal  0.528008  normal 
 
 
-
 
NC_007925  RPC_3378  methyl-accepting chemotaxis sensory transducer  64.18 
 
 
563 aa  672    Rhodopseudomonas palustris BisB18  Bacteria  normal  0.104618  normal 
 
 
-
 
NC_007925  RPC_4809  methyl-accepting chemotaxis sensory transducer  67.38 
 
 
563 aa  666    Rhodopseudomonas palustris BisB18  Bacteria  normal  normal 
 
 
-
 
NC_007958  RPD_0336  chemotaxis sensory transducer  74.11 
 
 
563 aa  768    Rhodopseudomonas palustris BisB5  Bacteria  normal  normal 
 
 
-
 
NC_007958  RPD_0337  chemotaxis sensory transducer  74.82 
 
 
563 aa  800    Rhodopseudomonas palustris BisB5  Bacteria  normal  0.760858  normal  0.789667 
 
 
-
 
NC_007958  RPD_1857  chemotaxis sensory transducer  65.43 
 
 
563 aa  700    Rhodopseudomonas palustris BisB5  Bacteria  normal  normal 
 
 
-
 
NC_011004  Rpal_5120  methyl-accepting chemotaxis sensory transducer  70.04 
 
 
563 aa  715    Rhodopseudomonas palustris TIE-1  Bacteria  normal  n/a   
 
 
-
 
NC_007778  RPB_3610  methyl-accepting chemotaxis sensory transducer  62.94 
 
 
563 aa  633  1e-180  Rhodopseudomonas palustris HaA2  Bacteria  normal  0.735593  normal  0.400148 
 
 
-
 
NC_009485  BBta_2902  methyl-accepting chemotaxis sensory transducer  64.96 
 
 
563 aa  626  1e-178  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.32606  normal  0.0943242 
 
 
-
 
NC_007925  RPC_4580  methyl-accepting chemotaxis sensory transducer  60.64 
 
 
563 aa  612  9.999999999999999e-175  Rhodopseudomonas palustris BisB18  Bacteria  normal  0.174371  normal 
 
 
-
 
NC_009485  BBta_2367  putative methyl-accepting chemotaxis receptor/sensory transducer precursor  61.81 
 
 
562 aa  608  1e-173  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal  0.287749 
 
 
-
 
NC_007964  Nham_0772  methyl-accepting chemotaxis sensory transducer  54.79 
 
 
561 aa  526  1e-148  Nitrobacter hamburgensis X14  Bacteria  normal  n/a   
 
 
-
 
NC_009485  BBta_0969  methyl-accepting chemotaxis sensory transducer  52.84 
 
 
562 aa  504  1e-141  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.956339  normal  0.570918 
 
 
-
 
NC_007925  RPC_2742  methyl-accepting chemotaxis sensory transducer  53.62 
 
 
560 aa  499  1e-140  Rhodopseudomonas palustris BisB18  Bacteria  normal  normal  0.429688 
 
 
-
 
NC_007925  RPC_3380  methyl-accepting chemotaxis sensory transducer  70.78 
 
 
567 aa  466  9.999999999999999e-131  Rhodopseudomonas palustris BisB18  Bacteria  normal  normal  0.689596 
 
 
-
 
NC_007925  RPC_4407  methyl-accepting chemotaxis sensory transducer  57.76 
 
 
566 aa  461  9.999999999999999e-129  Rhodopseudomonas palustris BisB18  Bacteria  normal  normal  0.365939 
 
 
-
 
NC_007958  RPD_3547  chemotaxis sensory transducer  59.21 
 
 
566 aa  449  1e-125  Rhodopseudomonas palustris BisB5  Bacteria  normal  normal 
 
 
-
 
NC_007778  RPB_4280  methyl-accepting chemotaxis sensory transducer  72.13 
 
 
563 aa  446  1.0000000000000001e-124  Rhodopseudomonas palustris HaA2  Bacteria  normal  normal 
 
 
-
 
NC_007925  RPC_4406  methyl-accepting chemotaxis sensory transducer  51.48 
 
 
566 aa  448  1.0000000000000001e-124  Rhodopseudomonas palustris BisB18  Bacteria  normal  normal  0.341232 
 
 
-
 
NC_009485  BBta_6635  methyl-accepting chemotaxis protein  67.2 
 
 
565 aa  442  1e-123  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.459746  normal  0.104137 
 
 
-
 
NC_007925  RPC_3161  methyl-accepting chemotaxis sensory transducer  67.77 
 
 
731 aa  443  1e-123  Rhodopseudomonas palustris BisB18  Bacteria  normal  0.072786  normal 
 
 
-
 
NC_007778  RPB_0192  methyl-accepting chemotaxis sensory transducer  66.84 
 
 
688 aa  439  9.999999999999999e-123  Rhodopseudomonas palustris HaA2  Bacteria  normal  normal 
 
 
-
 
NC_007778  RPB_2983  methyl-accepting chemotaxis sensory transducer  66.25 
 
 
561 aa  442  9.999999999999999e-123  Rhodopseudomonas palustris HaA2  Bacteria  normal  normal  0.0323515 
 
 
-
 
NC_007958  RPD_0065  chemotaxis sensory transducer  67.21 
 
 
688 aa  439  9.999999999999999e-123  Rhodopseudomonas palustris BisB5  Bacteria  normal  normal  0.0714339 
 
 
-
 
NC_009485  BBta_6483  methyl-accepting chemotaxis protein  49.91 
 
 
565 aa  436  1e-121  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.877741  normal 
 
 
-
 
NC_007778  RPB_2358  methyl-accepting chemotaxis sensory transducer  62.71 
 
 
673 aa  437  1e-121  Rhodopseudomonas palustris HaA2  Bacteria  normal  normal  0.207811 
 
 
-
 
NC_007925  RPC_1795  methyl-accepting chemotaxis sensory transducer  65.36 
 
 
561 aa  437  1e-121  Rhodopseudomonas palustris BisB18  Bacteria  normal  0.432423  normal  0.0230577 
 
 
-
 
NC_007958  RPD_2465  chemotaxis sensory transducer  64.34 
 
 
561 aa  435  1e-121  Rhodopseudomonas palustris BisB5  Bacteria  normal  0.5909  normal  0.697276 
 
 
-
 
NC_011004  Rpal_3598  methyl-accepting chemotaxis sensory transducer  67.28 
 
 
672 aa  433  1e-120  Rhodopseudomonas palustris TIE-1  Bacteria  normal  n/a   
 
 
-
 
NC_009485  BBta_0885  putative methyl-accepting chemotaxis protein  67.01 
 
 
691 aa  434  1e-120  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.493714  normal 
 
 
-
 
NC_009485  BBta_4269  putative methyl-accepting chemotaxis receptor/sensory transducer protein  71.15 
 
 
691 aa  429  1e-119  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal  0.35374 
 
 
-
 
NC_007778  RPB_3545  methyl-accepting chemotaxis sensory transducer  64.04 
 
 
689 aa  431  1e-119  Rhodopseudomonas palustris HaA2  Bacteria  normal  0.457552  normal  0.598514 
 
 
-
 
NC_007958  RPD_1918  chemotaxis sensory transducer  67.12 
 
 
688 aa  431  1e-119  Rhodopseudomonas palustris BisB5  Bacteria  normal  normal  0.537222 
 
 
-
 
NC_009485  BBta_2799  putative receptor/sensory transducer  73.35 
 
 
707 aa  426  1e-118  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.0655652  normal 
 
 
-
 
NC_007925  RPC_3804  methyl-accepting chemotaxis sensory transducer  68.36 
 
 
655 aa  427  1e-118  Rhodopseudomonas palustris BisB18  Bacteria  normal  0.772812  normal 
 
 
-
 
NC_011004  Rpal_2757  methyl-accepting chemotaxis sensory transducer  64.29 
 
 
561 aa  424  1e-117  Rhodopseudomonas palustris TIE-1  Bacteria  normal  0.0630329  n/a   
 
 
-
 
NC_007778  RPB_2250  methyl-accepting chemotaxis sensory transducer  67.82 
 
 
670 aa  423  1e-117  Rhodopseudomonas palustris HaA2  Bacteria  normal  normal 
 
 
-
 
NC_011004  Rpal_2025  methyl-accepting chemotaxis sensory transducer  64.34 
 
 
688 aa  420  1e-116  Rhodopseudomonas palustris TIE-1  Bacteria  normal  0.0110809  n/a   
 
 
-
 
NC_009485  BBta_2904  putative methyl-accepting chemotaxis protein  56.36 
 
 
568 aa  422  1e-116  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.481458  normal  0.283558 
 
 
-
 
NC_007778  RPB_2653  methyl-accepting chemotaxis sensory transducer  63.93 
 
 
691 aa  417  9.999999999999999e-116  Rhodopseudomonas palustris HaA2  Bacteria  decreased coverage  0.00184965  normal  0.0777916 
 
 
-
 
NC_011004  Rpal_5172  methyl-accepting chemotaxis sensory transducer  66.4 
 
 
656 aa  418  9.999999999999999e-116  Rhodopseudomonas palustris TIE-1  Bacteria  normal  n/a   
 
 
-
 
NC_007958  RPD_3107  chemotaxis sensory transducer  65.45 
 
 
674 aa  418  9.999999999999999e-116  Rhodopseudomonas palustris BisB5  Bacteria  normal  normal  0.0664997 
 
 
-
 
NC_009485  BBta_4464  methyl-accepting chemotaxis sensory transducer  63.85 
 
 
573 aa  412  1e-114  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.610641  normal  0.757777 
 
 
-
 
NC_009485  BBta_2905  putative methyl-accepting chemotaxis protein  65.03 
 
 
542 aa  414  1e-114  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.234112  normal  0.211145 
 
 
-
 
NC_011004  Rpal_1871  methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor  46.62 
 
 
716 aa  413  1e-114  Rhodopseudomonas palustris TIE-1  Bacteria  normal  n/a   
 
 
-
 
NC_007925  RPC_3379  methyl-accepting chemotaxis sensory transducer  61.56 
 
 
587 aa  415  1e-114  Rhodopseudomonas palustris BisB18  Bacteria  normal  0.787169  normal 
 
 
-
 
NC_007958  RPD_0153  chemotaxis sensory transducer  64.68 
 
 
602 aa  414  1e-114  Rhodopseudomonas palustris BisB5  Bacteria  normal  normal 
 
 
-
 
NC_007925  RPC_1843  methyl-accepting chemotaxis sensory transducer  66.95 
 
 
568 aa  409  1e-113  Rhodopseudomonas palustris BisB18  Bacteria  normal  normal  0.618754 
 
 
-
 
NC_007925  RPC_2744  methyl-accepting chemotaxis sensory transducer  63.76 
 
 
572 aa  409  1e-113  Rhodopseudomonas palustris BisB18  Bacteria  normal  0.696609  normal  0.585687 
 
 
-
 
NC_009485  BBta_1388  methyl-accepting chemotaxis sensory transducer  63.78 
 
 
656 aa  406  1.0000000000000001e-112  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.0527529  normal  0.207734 
 
 
-
 
NC_007925  RPC_2149  methyl-accepting chemotaxis sensory transducer  58.99 
 
 
675 aa  405  1.0000000000000001e-112  Rhodopseudomonas palustris BisB18  Bacteria  normal  normal  0.0391093 
 
 
-
 
NC_009485  BBta_2901  methyl-accepting chemotaxis sensory transducer  67.71 
 
 
674 aa  408  1.0000000000000001e-112  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.14772  normal  0.22504 
 
 
-
 
NC_007958  RPD_0995  chemotaxis sensory transducer  62.31 
 
 
656 aa  406  1.0000000000000001e-112  Rhodopseudomonas palustris BisB5  Bacteria  normal  0.880627  normal 
 
 
-
 
NC_009485  BBta_2903  methyl-accepting chemotaxis sensory transducer  49.32 
 
 
568 aa  404  1e-111  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.335645  normal  0.0996392 
 
 
-
 
NC_007778  RPB_1321  methyl-accepting chemotaxis sensory transducer  65.44 
 
 
730 aa  405  1e-111  Rhodopseudomonas palustris HaA2  Bacteria  normal  0.0177086  normal  0.260794 
 
 
-
 
NC_011004  Rpal_4783  methyl-accepting chemotaxis sensory transducer  63.44 
 
 
730 aa  404  1e-111  Rhodopseudomonas palustris TIE-1  Bacteria  normal  n/a   
 
 
-
 
NC_009485  BBta_6717  methyl-accepting chemotaxis sensory transducer  63.98 
 
 
741 aa  402  1e-111  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.447835  normal  0.587139 
 
 
-
 
NC_007925  RPC_4101  methyl-accepting chemotaxis sensory transducer  69.52 
 
 
698 aa  404  1e-111  Rhodopseudomonas palustris BisB18  Bacteria  normal  normal 
 
 
-
 
NC_007958  RPD_0994  chemotaxis sensory transducer  62.67 
 
 
656 aa  403  1e-111  Rhodopseudomonas palustris BisB5  Bacteria  normal  0.357708  normal 
 
 
-
 
NC_011004  Rpal_4941  methyl-accepting chemotaxis sensory transducer  69.86 
 
 
563 aa  404  1e-111  Rhodopseudomonas palustris TIE-1  Bacteria  normal  0.396774  n/a   
 
 
-
 
NC_007778  RPB_2961  methyl-accepting chemotaxis sensory transducer  64.99 
 
 
563 aa  399  9.999999999999999e-111  Rhodopseudomonas palustris HaA2  Bacteria  normal  normal 
 
 
-
 
NC_011004  Rpal_4118  methyl-accepting chemotaxis sensory transducer  62.67 
 
 
567 aa  398  1e-109  Rhodopseudomonas palustris TIE-1  Bacteria  normal  n/a   
 
 
-
 
NC_007958  RPD_1867  chemotaxis sensory transducer  47.21 
 
 
714 aa  396  1e-109  Rhodopseudomonas palustris BisB5  Bacteria  normal  normal  0.133032 
 
 
-
 
NC_009485  BBta_7508  putative methyl-accepting chemotaxis protein (with a HAMP region)  47.22 
 
 
552 aa  395  1e-108  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.692825  normal 
 
 
-
 
NC_009485  BBta_2906  putative methyl-accepting chemotaxis protein  47.86 
 
 
564 aa  395  1e-108  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.430156  normal  0.106702 
 
 
-
 
NC_007925  RPC_1253  methyl-accepting chemotaxis sensory transducer  67.49 
 
 
567 aa  391  1e-107  Rhodopseudomonas palustris BisB18  Bacteria  normal  normal  0.010155 
 
 
-
 
NC_010725  Mpop_0581  methyl-accepting chemotaxis sensory transducer  43.09 
 
 
562 aa  388  1e-106  Methylobacterium populi BJ001  Bacteria  normal  0.0281709  decreased coverage  0.00474558 
 
 
-
 
NC_007958  RPD_0497  chemotaxis sensory transducer  60.62 
 
 
577 aa  386  1e-106  Rhodopseudomonas palustris BisB5  Bacteria  normal  normal 
 
 
-
 
NC_009485  BBta_2907  putative methyl-accepting chemotaxis protein  65.83 
 
 
556 aa  387  1e-106  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.835875  normal  0.0729634 
 
 
-
 
NC_009485  BBta_2908  methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor  65.12 
 
 
561 aa  389  1e-106  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal  0.07018 
 
 
-
 
NC_009485  BBta_2900  putative methyl-accepting chemotaxis receptor/sensory transducer (chemoreceptor)  58.16 
 
 
675 aa  384  1e-105  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.142675  normal  0.173139 
 
 
-
 
NC_011757  Mchl_3471  methyl-accepting chemotaxis sensory transducer  42.36 
 
 
561 aa  369  1e-101  Methylobacterium chloromethanicum CM4  Bacteria  normal  0.130295  normal 
 
 
-
 
NC_007643  Rru_A1293  methyl-accepting chemotaxis sensory transducer  41.12 
 
 
562 aa  366  1e-100  Rhodospirillum rubrum ATCC 11170  Bacteria  decreased coverage  0.00511002  n/a   
 
 
-
 
NC_009485  BBta_1536  methyl-accepting chemotaxis protein  48.78 
 
 
716 aa  368  1e-100  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.566253  normal  0.284447 
 
 
-
 
NC_010172  Mext_3147  chemotaxis sensory transducer  42 
 
 
561 aa  365  2e-99  Methylobacterium extorquens PA1  Bacteria  normal  0.0908078  normal 
 
 
-
 
NC_010511  M446_2544  methyl-accepting chemotaxis sensory transducer  44.27 
 
 
566 aa  363  3e-99  Methylobacterium sp. 4-46  Bacteria  normal  0.476321  normal 
 
 
-
 
NC_010505  Mrad2831_0252  methyl-accepting chemotaxis sensory transducer  45.01 
 
 
562 aa  361  2e-98  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal 
 
 
-
 
NC_011004  Rpal_2142  methyl-accepting chemotaxis sensory transducer  72.69 
 
 
428 aa  359  8e-98  Rhodopseudomonas palustris TIE-1  Bacteria  normal  0.293169  n/a   
 
 
-
 
NC_007406  Nwi_2996  methyl-accepting chemotaxis protein  57.94 
 
 
698 aa  359  9e-98  Nitrobacter winogradskyi Nb-255  Bacteria  normal  normal 
 
 
-
 
NC_007964  Nham_1080  methyl-accepting chemotaxis sensory transducer  58.47 
 
 
698 aa  353  5e-96  Nitrobacter hamburgensis X14  Bacteria  normal  0.0139762  n/a   
 
 
-
 
NC_007964  Nham_1045  methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor  67.83 
 
 
564 aa  352  1e-95  Nitrobacter hamburgensis X14  Bacteria  normal  n/a   
 
 
-
 
NC_011894  Mnod_5243  methyl-accepting chemotaxis sensory transducer  44.97 
 
 
562 aa  350  3e-95  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_007925  RPC_2457  methyl-accepting chemotaxis sensory transducer  57.68 
 
 
665 aa  349  6e-95  Rhodopseudomonas palustris BisB18  Bacteria  normal  0.0375918  normal  0.509707 
 
 
-
 
NC_007643  Rru_A3563  chemotaxis sensory transducer  40.74 
 
 
563 aa  345  8.999999999999999e-94  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  n/a   
 
 
-
 
NC_010725  Mpop_3344  methyl-accepting chemotaxis sensory transducer  42.78 
 
 
561 aa  345  1e-93  Methylobacterium populi BJ001  Bacteria  normal  0.828703  normal 
 
 
-
 
NC_007406  Nwi_0530  methyl-accepting chemotaxis protein  68.63 
 
 
569 aa  344  2e-93  Nitrobacter winogradskyi Nb-255  Bacteria  normal  0.667624  normal 
 
 
-
 
NC_009485  BBta_0330  putative methyl-accepting chemotaxis receptor/sensory transducer  54.86 
 
 
676 aa  343  2.9999999999999997e-93  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal  0.0869057 
 
 
-
 
NC_011004  Rpal_4271  methyl-accepting chemotaxis sensory transducer  54.01 
 
 
567 aa  340  2.9999999999999998e-92  Rhodopseudomonas palustris TIE-1  Bacteria  normal  n/a   
 
 
-
 
NC_010725  Mpop_2047  methyl-accepting chemotaxis sensory transducer  43.96 
 
 
562 aa  337  3.9999999999999995e-91  Methylobacterium populi BJ001  Bacteria  normal  normal  0.759486 
 
 
-
 
NC_007925  RPC_1709  methyl-accepting chemotaxis sensory transducer  45.94 
 
 
568 aa  331  2e-89  Rhodopseudomonas palustris BisB18  Bacteria  normal  0.55655  normal  0.12205 
 
 
-
 
NC_011004  Rpal_0233  methyl-accepting chemotaxis sensory transducer  58.12 
 
 
563 aa  328  1.0000000000000001e-88  Rhodopseudomonas palustris TIE-1  Bacteria  normal  n/a   
 
 
-
 
NC_007778  RPB_1030  methyl-accepting chemotaxis sensory transducer  56.88 
 
 
653 aa  326  6e-88  Rhodopseudomonas palustris HaA2  Bacteria  normal  normal 
 
 
-
 
NC_007958  RPD_3581  methyl-accepting chemotaxis sensory transducer  47.68 
 
 
567 aa  325  2e-87  Rhodopseudomonas palustris BisB5  Bacteria  normal  0.0981346  normal  0.985512 
 
 
-
 
NC_007925  RPC_4527  methyl-accepting chemotaxis sensory transducer  54.9 
 
 
667 aa  323  5e-87  Rhodopseudomonas palustris BisB18  Bacteria  normal  normal  0.527831 
 
 
-
 
NC_009485  BBta_0575  methyl-accepting chemotaxis sensory transducer  54.7 
 
 
681 aa  322  9.999999999999999e-87  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal 
 
 
-
 
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