Gene RPB_1030 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRPB_1030 
Symbol 
ID3909154 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRhodopseudomonas palustris HaA2 
KingdomBacteria 
Replicon accessionNC_007778 
Strand
Start bp1182159 
End bp1184120 
Gene Length1962 bp 
Protein Length653 aa 
Translation table11 
GC content69% 
IMG OID637882923 
Productmethyl-accepting chemotaxis sensory transducer 
Protein accessionYP_484651 
Protein GI86748155 
COG category[N] Cell motility
[T] Signal transduction mechanisms 
COG ID[COG0840] Methyl-accepting chemotaxis protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones12 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones24 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAGTCTTC GTACGCGCAT CACGCTCGCT TTGATCGCCG CTTCGGTGCT GACCGCGGCC 
GTCCTGCTGA TCGGATCGAT CACCACCATC AGCGACATCA TCCGCCGCGC CGACGACCGC
GAACTACGCG GCCACTACGA TGCGGTGATC TCACAGCTCG CGCAGGAGGC CCGGCAGGCG
GCGGCGATGA GCGCCGTCGT CGCCGCGATG CCGGCTGCGC AGCAGGCTCT GGCGCGTCGC
GACCGCCAGG GGTTGTTCGA CCTCTTCCTG GCGGGCTTTC CGTTTCTCAA GTCGCAATAC
GGCGTCGATC AGTTCCAGTT CCACGTTCCG CCGGCGACGT CGTTCGCCCG CATCCACCAG
GCCCAGAAAT TCGGCGACGA CCTGTCGGGC TTCCGCAAGA CGGTGGTCGA GGCCAATCGC
GACCGCAAGG CGATCGTCGG TCTGGAGTCG GGCGTCGCCG GACTCGGCAT CCGCGGCGTG
GTGCCGGTGG CGCACGACGG CAAACATGCC GGCACGGTCG AATTCGGCCT GACCTTCGGC
CAGGGCTTCT TCGACAAGTT CAAGCAGGAG CGGGGCGTCG ATGTCGCCCT GCATCTGAGC
AAGCCCGACG GCTCGGTCGC CGCGCCAGTC GGCACGATCC GCGGCCCGAG CTTCTTCACC
CCCGCCGAGA TCCGGAAGTC CGCGGGCGGC GCGGTGACGA CCCGTCAGGC CGACGACGCC
AGCGGCAAGC CGATGGCGAT GCTGCTCGGC CCGGTCAAGG ACTTCTCCGG CCATCCGATC
GGCGCGCTCG AAATCGCGAT GGACAACAGC GAATATGCCG CCGCCACCAG CAACGCCTAT
CTGCTCGCCA TCCTCGCCTC GGTGGGAGCC CTGGTGCTGG CCGCGATCAC CGGCTTCATC
ATCGCCGGCG GCATCTCGCG GCCGATCCTG TCGCTGTGCG AGGCGATGCG CGGCCTCGCC
GGCGGCGATC TGTCGATTGC GCTGCCGCCG CTGAAACGAA AGGACGAGGT CGGCCAGATG
ATCGACGCGG TCGGCGTCTT CCGCGAGAGC ATGATCGAAA CCGAGCGGCT GCGCGCCGAT
CAGGCCGAAG CGGCGCGGCG GCAGGCGGCA CAGCGCCGCG ACGAGATGCA CGGCCTCGCC
GAGTCGTTCG AGGCGGCGGT CGGCCGCATC GTCGAGACGG TGTCGTCGGC CTCGACCGAA
CTCGAAGCCT CCGCCGGCGC GCTGACCGCC ACCGCCGACC GCTCGCTCGA CATCGCCACC
GCGGTCGCGG CGGCGTCGGA GGAAGCGTCC ACCAACGTCC AATCGGTCGC CTCCGCCACC
GAGGAGATGA CCTCGTCGGT CGGCGAGATC GGCCGCCAGG TCCGGGAATC GGCGCAGATC
GCCCGCGACG CGGTGAGCCA GGCCGAGACC ACCAACGCCC ACGTCGCCGA ACTGTCGCGC
GCCGCCGCAC AGATCGAATC CGTCGTCGAG CTGATCAACA AGATCGCCGG CCAGACCAAT
CTGCTGGCGC TCAACGCCAC CATCGAGGCG GCGCGCGCCG GCGAGGCCGG CCGCGGCTTC
GCCGTGGTCG CCGCCGAGGT CAAGGCGCTG GCCGAGCAGA CCGCGACCGC CACCAGCGAC
ATCGCCCGCT ACGTCGGCAG CATCCAGAGC GCGACCGGCG AGTCGGTGGC GTCGATCGGT
TCGATCGGCC AGACCATCAA CCGGCTGTCG GAGATCGCGG CCGCGATCGC GTCGGCGGTC
GAACAGCAGG GCGTCGCCAC CAGGGAAATC TCGCGCAATG TCCACCACGC CGCCGAGGGC
ACCCATCAGG TCACCGTCAA CATCGCCGAG GTTCAGCGCG GCGCCACCGA GACCGAACTC
GCCTCCACCA GCGTGCTGGC GGCGGCGCAT TCGCTGTCGG AAGAGAGCAA CGCCCTGAAA
AAGGAAGTCG AGCACTTCCT GCATTCGATC CGCGCCGCCT GA
 
Protein sequence
MSLRTRITLA LIAASVLTAA VLLIGSITTI SDIIRRADDR ELRGHYDAVI SQLAQEARQA 
AAMSAVVAAM PAAQQALARR DRQGLFDLFL AGFPFLKSQY GVDQFQFHVP PATSFARIHQ
AQKFGDDLSG FRKTVVEANR DRKAIVGLES GVAGLGIRGV VPVAHDGKHA GTVEFGLTFG
QGFFDKFKQE RGVDVALHLS KPDGSVAAPV GTIRGPSFFT PAEIRKSAGG AVTTRQADDA
SGKPMAMLLG PVKDFSGHPI GALEIAMDNS EYAAATSNAY LLAILASVGA LVLAAITGFI
IAGGISRPIL SLCEAMRGLA GGDLSIALPP LKRKDEVGQM IDAVGVFRES MIETERLRAD
QAEAARRQAA QRRDEMHGLA ESFEAAVGRI VETVSSASTE LEASAGALTA TADRSLDIAT
AVAAASEEAS TNVQSVASAT EEMTSSVGEI GRQVRESAQI ARDAVSQAET TNAHVAELSR
AAAQIESVVE LINKIAGQTN LLALNATIEA ARAGEAGRGF AVVAAEVKAL AEQTATATSD
IARYVGSIQS ATGESVASIG SIGQTINRLS EIAAAIASAV EQQGVATREI SRNVHHAAEG
THQVTVNIAE VQRGATETEL ASTSVLAAAH SLSEESNALK KEVEHFLHSI RAA