Gene RPD_3581 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRPD_3581 
Symbol 
ID4024095 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRhodopseudomonas palustris BisB5 
KingdomBacteria 
Replicon accessionNC_007958 
Strand
Start bp3989044 
End bp3990747 
Gene Length1704 bp 
Protein Length567 aa 
Translation table11 
GC content66% 
IMG OID637963785 
Productmethyl-accepting chemotaxis sensory transducer 
Protein accessionYP_570705 
Protein GI91978046 
COG category[N] Cell motility
[T] Signal transduction mechanisms 
COG ID[COG0840] Methyl-accepting chemotaxis protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones10 
Plasmid unclonability p-value0.0981346 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones14 
Fosmid unclonability p-value0.985512 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGGGCGTT TGATCAAGAA CATCGGGCTA TCCTGGAAAG TTCAGCTCGC TCCAGCGCTG 
CTGGTCGTGG CGCTGCTCGG CATCGGCGCC TACGCGCTGG AGGTGCTGCG GATCAATCAG
CAGGGCGTTG ACGTGCTGGT GTCCGGGCCG GTGCGGCTGT CGGAACTCGC CGGCGATCTC
AACAATGCCG CCTGGACCGC GCACGCGAAG CTCTACCGGC TGGCGGCGAC CGCGGCCAAC
GAAACCGACC AGGCCAAGCT CACCAAGATT TCGACAGAAG CCAATGCGGC GATCGCCAAG
ATCCCGGAAG CGCTCGCCGA GGTCGACAAG ACCCTCGGCG CTGCCGCCTC GCGGCCGGAG
TTCCAGAAGC TGAAGGCCGC TGTGACCGGC TATCAGAAGC AGGCGAAGAA CGCGATCGAG
ATGGCCGATG GCGACGCCGG CTCGGCGATG CTGTTCATCA AGAGCGCAGA GAAGAGCTTC
ACCGATATCG ATGCTCTGGT CGGAGACCTC GCCGAATCCA GCAAAGACGG CCGCGATCGC
GCGATCGCGA ACGCCAAGAT CGCGATCGAT CGCCAACAGT GGACGTTGGG GGCGGTCCTG
CTCGCGGTGT CACTCGCCGG CATCGTGATG TCGTTCCTGA TCGGCCGCGG AATTTCCCGG
CCTGTGGTGG CGATGTCGGG CGCGATGCAT CAGCTCGCGC AAGGCAATTT CGCGGTGCAG
CTGCCGGGAC TCGATCGCGG CGACGAAGTC GGCCGGATGG CGCGTGCGGT CGAGGACTTC
AAGCGGCAGG CGATCGAGAA GGCGGAGCGG GATCACGTCG CCCGCGAACG GGAAGAGCAC
GCAGCCGCCG AGGCGCGCCG TGCCGAATTG CATCAACTCG CCGACGGTTT CGAAGCTGCG
GTCGGCCAGA TCGTCGAGGC GGTCGGCTCG GCCTCGCGCG AACTCGAACA CTCCGCCGAT
GCGCTGGCCA AGGGCAGCGC CACGACGCAG CAGCTCTCCA ACGTGGCCGC CTCGGTCTCG
ACCGAGACGT CGAACCACGT CCAGTCGGTA GCCTCCGCGA CCGAAGAGAT GACGGCGTCG
GTCGATGAAA TCGGCCGCCA GGTCCGCGAG TCGCGCGCCA TCGCCACTGA GGCTGTGTCT
CAGGCCGAGC AGACCGATGC GCGGATCAGC AAGCTGTTGC AGGCCGCCAA CCGGATCGGC
GACGTCACCG AGCTGATCAC CACCATCGCC GGGCAGACCA ATCTGCTGGC GCTCAACGCC
ACCATCGAAT CCGCCCGCGC CGGCGCGGCC GGCCGCGGCT TCGCCGTCGT GGCGCAGGAG
GTCAAGGCGC TGGCCGAGCA GACCTCCAAG GCGACCGAGG AAATCAGCTC GCAGATCTCC
GAGATCCAGT CCGCGACACG GGAATCGGCC GTCGCCATCA AGGAGATCGG CGGCACGATC
GGACGCATTG CGCATATCGC CTCGACCATC GCCGCCTCTG TCGACGAGCA GGGATCAGCG
ACCCAGGAGA TTGCCCGCAG CGTTCAGAAG GCGGCGATCG GCACCAGTCA GGTCGCGGGC
AGCATCGCCG AAGTCAACCG CGGCGCCGCC GACACCGGCA AGGCGTCGTC GCATGTGCTG
ACCTCCGCGC AATCATTGTC CAGTGAAAAC GGCCGTTTGC GCACCGAGGT GCAAAAATTT
CTCGCGACCG TCCGGGTCGC GTAA
 
Protein sequence
MGRLIKNIGL SWKVQLAPAL LVVALLGIGA YALEVLRINQ QGVDVLVSGP VRLSELAGDL 
NNAAWTAHAK LYRLAATAAN ETDQAKLTKI STEANAAIAK IPEALAEVDK TLGAAASRPE
FQKLKAAVTG YQKQAKNAIE MADGDAGSAM LFIKSAEKSF TDIDALVGDL AESSKDGRDR
AIANAKIAID RQQWTLGAVL LAVSLAGIVM SFLIGRGISR PVVAMSGAMH QLAQGNFAVQ
LPGLDRGDEV GRMARAVEDF KRQAIEKAER DHVAREREEH AAAEARRAEL HQLADGFEAA
VGQIVEAVGS ASRELEHSAD ALAKGSATTQ QLSNVAASVS TETSNHVQSV ASATEEMTAS
VDEIGRQVRE SRAIATEAVS QAEQTDARIS KLLQAANRIG DVTELITTIA GQTNLLALNA
TIESARAGAA GRGFAVVAQE VKALAEQTSK ATEEISSQIS EIQSATRESA VAIKEIGGTI
GRIAHIASTI AASVDEQGSA TQEIARSVQK AAIGTSQVAG SIAEVNRGAA DTGKASSHVL
TSAQSLSSEN GRLRTEVQKF LATVRVA