Gene RPB_3545 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRPB_3545 
Symbol 
ID3911347 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRhodopseudomonas palustris HaA2 
KingdomBacteria 
Replicon accessionNC_007778 
Strand
Start bp4056085 
End bp4058154 
Gene Length2070 bp 
Protein Length689 aa 
Translation table11 
GC content67% 
IMG OID637885447 
Productmethyl-accepting chemotaxis sensory transducer 
Protein accessionYP_487151 
Protein GI86750655 
COG category[N] Cell motility
[T] Signal transduction mechanisms 
COG ID[COG0840] Methyl-accepting chemotaxis protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.457552 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones12 
Fosmid unclonability p-value0.598514 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACCCACA CCGCTTCGTC GATTGCAGTC GCACCGAAAT CCTCCATTCT CTTCGCGATG 
TTCACCAATC GCAAAATCGG CACCAAGATC GCCATCGGCT TCGCCGCTAT CCAGGTACTG
ATGGCGGTGC TCGCTGTGAT GAACTACTCC AGCTTCGGTA CGATCGGCAG CGCGTTCACC
TCGTTCGGAC AGCGCGTCGC GGTCGTCGGC ATCGCCCGGG AGATCGACCG CAGCTTCACC
GCCTTTCGCG GTATCGTGCG CGAGTTCGGC ATGACCGGCG ACGAAGCGCT GCTCGGCGAA
GCGGAGGAGC GCAAGCAGAA GCTCGCGGAC AGCATCGCGC AAGGCTCGCG CCAGCTCCAG
AGTCCCGAGA CGAGGCCGGT GATGGCCGAG ATCGACCGCG AGGTTACCGT CTACGGCAAG
GGGTTTGCGG ATGTCGTCAA GCTGCGTCAG GAGCAGAATC GACTGACGCT CGAGGTGCTC
GGACCGATCG GGCAGCGCGT GATGAGCCGA CTGGAGCAGT TGCAGAACTC GGCGATGACC
GGCGACGGCC GTAGCGGCGA CGCGCTGCTG GTCGGACAGG CCATGAAGCA ACTCCTGACG
CTGCGGCTCG CGGCCAGCAA GGTTCTGGGG ATGCGCCTGG AGCGTGAAGC CTCGGTGGCG
GCTGAAAAGG CGATTACTGA ACTCAAGACC ACGTTGTCGG CCCTGAAGAT CTCGCTCGAC
ACAGCCGGCG AGCAGAGCCA GCTCGTCGCG ATCGACGCCG ACCTCGCCAG CTACACCGAG
GCCTTCCGCA GGGCGTCAGC CGACGTCAAT GCGGTCGAGA CGAAGATCGG CGAGATGGCC
AAGGTGGCGG ATGCTCTGGC TGCATCGGCC GCGCGGATCA ATCAGATCGG CGCCGCCGAG
CAGAAGCAGA TCGGGCAGGA AACGCAGGCG CTGGTCGCCG ACACCAGGAG TCAGACGCTG
ATCATCACCA TCACGGCGCA GCTGATCGGC GTGGTTCTGG CCTGGCTGAT CGGCCGCGCG
GTGTCGCGCC CGATCATTCA GATGTCGGAT TCGATGCGGG AATTGGCGTC CGGCAATCTC
GACGTCGCCG TGCCCGGCTC GGGGCGGTTG GACGAGATCG GCCTGATGGC CTGCACGGTC
GAAGTGTTCA AGTCCCACGC GATCGAGGTG CAGCGGCTGA CGCAGGAGCA GGAGGAAGCC
GAGCGCCGCG TGGCCGAGGA GCACAAGGCC GAGATGCGGC GGCTGGCCGA CGATTTCGAA
GGCGCGGTCG GCCAGATCAT CCAGACCGTG ACCTCGGCCT CGACCGAACT CGAAGCTTCC
GCCGGCTCGC TGACTTCGAC CGCCGATCGC TCGCAGGAGC TTGCGACCTC GGTCGCGGCG
GCATCCGAGC AGGCCTCTGC GAATGTACAG TCGGTGGCGT CCGCGACCGA GCAGATGTCG
TCGTCGATCT CCGAAATCAG CCGTCAGGTG CAGCAGTCGG CGCGGATCGC CGGCGATGCC
GTCGATCAGG CGCGCAAGAC CAACGGCCGG ATCGGCGAGC TCGCGGATGC GGCGAGCCGG
ATCGGCGCCG TCGTCGATCT GATCAACACC ATCGCCGGGC AGACCAATCT GCTGGCGCTG
AACGCCACGA TCGAGGCGGC CCGCGCCGGC GACGCCGGCC GCGGCTTCGC CGTGGTGGCG
CAGGAGGTCA AGGCGCTGGC TGAACAGACC TCGAAGGCGA CCGGCGAGAT CAGCCAGCAG
ATCAGCGGCA TGCAGACGGC GACGCAGGAG TCGGTCGGCG CCATTCGCGA GATCGGCGGC
ACCATCGAGC GGATGTCGGA AATCGCCTCG ACCATCGCCT CCGCGGTGGA AGAGCAGGGT
GCTGCGACCC AGGAGATCGC CCGCAACGTG CAGCAGGCGG CGCAGGGCAC GCAGCAGGTC
TCGGCCAACA TCACCGACGT GCAGCGCGGC GCCACCGAGA CCGGCACCGC GTCGACGCAG
GTGTTGGCCG CGGCGCAGTC GCTGTCGCGC GACAGCAACC GTCTGCGCGA CGAAGTCAGC
CGCTTCGTCG AAACCGTGCG GGCGGCGTAG
 
Protein sequence
MTHTASSIAV APKSSILFAM FTNRKIGTKI AIGFAAIQVL MAVLAVMNYS SFGTIGSAFT 
SFGQRVAVVG IAREIDRSFT AFRGIVREFG MTGDEALLGE AEERKQKLAD SIAQGSRQLQ
SPETRPVMAE IDREVTVYGK GFADVVKLRQ EQNRLTLEVL GPIGQRVMSR LEQLQNSAMT
GDGRSGDALL VGQAMKQLLT LRLAASKVLG MRLEREASVA AEKAITELKT TLSALKISLD
TAGEQSQLVA IDADLASYTE AFRRASADVN AVETKIGEMA KVADALAASA ARINQIGAAE
QKQIGQETQA LVADTRSQTL IITITAQLIG VVLAWLIGRA VSRPIIQMSD SMRELASGNL
DVAVPGSGRL DEIGLMACTV EVFKSHAIEV QRLTQEQEEA ERRVAEEHKA EMRRLADDFE
GAVGQIIQTV TSASTELEAS AGSLTSTADR SQELATSVAA ASEQASANVQ SVASATEQMS
SSISEISRQV QQSARIAGDA VDQARKTNGR IGELADAASR IGAVVDLINT IAGQTNLLAL
NATIEAARAG DAGRGFAVVA QEVKALAEQT SKATGEISQQ ISGMQTATQE SVGAIREIGG
TIERMSEIAS TIASAVEEQG AATQEIARNV QQAAQGTQQV SANITDVQRG ATETGTASTQ
VLAAAQSLSR DSNRLRDEVS RFVETVRAA