Gene RPD_0153 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRPD_0153 
Symbol 
ID4020609 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRhodopseudomonas palustris BisB5 
KingdomBacteria 
Replicon accessionNC_007958 
Strand
Start bp171562 
End bp173370 
Gene Length1809 bp 
Protein Length602 aa 
Translation table11 
GC content64% 
IMG OID637960330 
Productchemotaxis sensory transducer 
Protein accessionYP_567294 
Protein GI91974635 
COG category[N] Cell motility
[T] Signal transduction mechanisms 
COG ID[COG0840] Methyl-accepting chemotaxis protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones18 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones20 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGCCCGGG TTTCAATCAG AGCGCTGTCG GTTGCGGTTT TCCTCGGGCT GGCGTTGATC 
GTCTTCCTCA ATTTGTCGTC GTTCTTTCTC TATCAGGGGG CGCAGGGCGA AATCTCCGAA
GCGCAAACGT CGCGCTATCA ATCCTATCTG CTGGCCGACG AACTTCGGCA GAGTTCCGAT
GACCTGACGC GCCTGGTGCG CACTTATGTC GTGACCGGCG ACGCCAAATT CGAACAGCAG
TATTGGGACG TGCTCGCCAT CCGCAATGGC GAGAAGCCGC GGCCCGATCA ATATCAGCGC
ATCTATTGGG ATTTCATGGC GGCCGACGGC CGCAAACCGC GCCCCGATGG CGTGAACGCC
TCGCTGCAGC AACTGATGGA ACGGGGCGGC TTCTCCGCGG AGGAGTTCGG CAAGCTGAAA
CAGGCCCAGA ACAACTCCAA TGAACTGATC AAGCTCGAGA CCATCGCAAT GAACGCGGTG
AAAGGCAGGT TCGAGGACCG TGACGGCAAG TTCACAAAGA CCGGCGCGCC GGACACCGCA
CTGGCGCGCG AGCTGGTGCA TTCAGCCGAC TACCACAAGT ACAAGGCGCA GATCATGGCG
CCGATCGACG AATTCTTCGT GCTGCTCGAC CGCCGTACCG GCGCCAATGT GGCGATCGCA
GAGGCCAAGG CTGCGCTCTA TCGCACCGTG TCGATCGTCT TCCTGGGGCT GTTGCTGGTC
AGCGCGCTGG TGATCGGCTG GGTCATGCTG CGCGGCATCG CCCGGCCATT GCGCTCGCTC
AGCGTCTCCA TGAACAAGCT GGCCGAAGGC GACTTCAACG TGGCGCTGCC GGGCCTCGAC
GCCCGCAACG AACTCGGCGA AGTGGCGCGC GCGGTCGAGC GCTTCAAGGT CAAGGCGGAG
GAAAAGGGCC AAGCCGAGGC GGAGGCGCTG CTGAAGCAGG ACCAGATCGC TGCGTCGCAG
CGTCGGAAAG ACACCCACAA GCTCGCCGAC GATTTCGAAG GCGCCGTCGG CCGCATCATC
GATACCGTCT CGTCGGCCTC GAGCGAACTG GAGTCGTCGG CCGGCAAACT GACGTCGACG
GCCACGAGGG CTCAGCAACT CGCCACATTG GTCGCGGGGG CATCGGAGGA GGCCTCGACC
AACGTGCAGT CGGTGGCGTC GGCGACGGAG GAACTGAGCG CTTCAGTCAA CGAGATCAGC
CGGCAGGTGC AAGATTCGGC GCGGATGGCG AGCGAGGCAG TCGATCAGGC GCGCAGGACC
AACGACCGGG TCGGCGAATT GTCGAAGGCG GCCGCCCGCA TCGGCGACGT GGTCGAGCTC
ATCAACACCA TCGCCGGGCA GACCAACCTG CTGGCGCTCA ACGCCACCAT CGAGGCCGCG
CGCGCCGGAG AGGCCGGACG GGGTTTCGCC GTGGTCGCTT CCGAGGTGAA GGCGCTCGCG
GAGCAGACCG CGAAGGCGAC CGGCGATATC GGCCAGCAGA TCAGCGGCAT CCAGGCCGCG
ACCCAGGAAT CGGTCGGAGC CATCAAGGAG ATCAGCGGCA CCATCGAGAG ACTGTCGGAA
ATCTCGGCGA CGATCGCCTC CGCCGTGGAA GAACAGGGCG CCGCGACGCT GGAAATCTCC
CGCAATGTTC AGCAGGCCGC GCAAGGCACC CAGCGGGTCA GCTCCAATAT CGCCGATGTT
CAGAACGGCG CCAGCGAAAC GGGATCGGCC TCGTCACATG TGCTCTCGGC GGCGCAGTCG
CTGTCGAACG ACAGCAATCG GCTGAAGCAG GAAGTCGGCA GGTTCCTCGA TTCAGTGCGC
GCCGCATAG
 
Protein sequence
MARVSIRALS VAVFLGLALI VFLNLSSFFL YQGAQGEISE AQTSRYQSYL LADELRQSSD 
DLTRLVRTYV VTGDAKFEQQ YWDVLAIRNG EKPRPDQYQR IYWDFMAADG RKPRPDGVNA
SLQQLMERGG FSAEEFGKLK QAQNNSNELI KLETIAMNAV KGRFEDRDGK FTKTGAPDTA
LARELVHSAD YHKYKAQIMA PIDEFFVLLD RRTGANVAIA EAKAALYRTV SIVFLGLLLV
SALVIGWVML RGIARPLRSL SVSMNKLAEG DFNVALPGLD ARNELGEVAR AVERFKVKAE
EKGQAEAEAL LKQDQIAASQ RRKDTHKLAD DFEGAVGRII DTVSSASSEL ESSAGKLTST
ATRAQQLATL VAGASEEAST NVQSVASATE ELSASVNEIS RQVQDSARMA SEAVDQARRT
NDRVGELSKA AARIGDVVEL INTIAGQTNL LALNATIEAA RAGEAGRGFA VVASEVKALA
EQTAKATGDI GQQISGIQAA TQESVGAIKE ISGTIERLSE ISATIASAVE EQGAATLEIS
RNVQQAAQGT QRVSSNIADV QNGASETGSA SSHVLSAAQS LSNDSNRLKQ EVGRFLDSVR
AA