Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rpal_5172 |
Symbol | |
ID | 6412872 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Rhodopseudomonas palustris TIE-1 |
Kingdom | Bacteria |
Replicon accession | NC_011004 |
Strand | + |
Start bp | 5575300 |
End bp | 5577270 |
Gene Length | 1971 bp |
Protein Length | 656 aa |
Translation table | 11 |
GC content | 65% |
IMG OID | 642715062 |
Product | methyl-accepting chemotaxis sensory transducer |
Protein accession | YP_001994135 |
Protein GI | 192293530 |
COG category | [N] Cell motility [T] Signal transduction mechanisms |
COG ID | [COG0840] Methyl-accepting chemotaxis protein |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 23 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGTCTCTTC GTCTCGGCCT CACGTCCAAG ATCAATTCCA TCGCTCTGGT CGGCATCATC GGCGTTCTCG CCTTTGGCGC GCTGTACTTG ATCGGGACAT CTTCACAGGA TGCAGCGAGG CTGATCGACG ACCGTGCCCG CGCACTCGGC GATAGCAACG CGAAATTGCA GATCGCAATG CTCGAGCAAC GCCGCGCCGA GAAGAACTTC ATGCTGCGTA AGGACGAGCA GTATCTCGGC ATGTTTCAGC AGAGCGGCCG GGTCGCAACC GAGATGCTCG CCGATATGAT CCGGCAGACC GAGGCGACCG GTCAGACTGA CCTCACGCGC AGTTTGAAGT CGGTGCAAGA TGGCTTCGAG AACTACCAAA GCCAATTCGG CAGGTTCGCC GAGGCCACCG TGAAGCTCGG GCTCAAGGAG GACCTTGGAC TCGAAGGCAG CCTGCGAGCT TCGGTACACG GTGTCGAAAA ATCGATCAGC AGCTTCGACG CGCCGGCCCT GATGGTCCAG ATGCTGATGA TGCGCCGGCA CGAGAAGGAC TTCATGCTCC GCCGTCATCC GAAATACGGC GAGGCGATGA AGAAGCAATC CGCCGAATTC GCCAAGCTGC TCGCCGCATC GGATCTGCCG CAGACGGCCA AGACCGAGAT CACGCAAAAG CTCGACGCCT ATCAGCGCGA TTTCTCAGCC TGGATGGAGA ATGCGCTGGC GCTTGATCGT GCCGAGAAAG ACATGGTGAC GACGTATCGG GCGCTGCAGC CCGCGCTCGA CGAGCTCTCC AGCACGGTGC GGCAGCAGGC GGACCTCGCA AAGACGATGG CCGCTACCGC GCGGCAGGCC ACCGAGCAGC GCATGCAGAT CGCGATCATC GCCATCATCC TGACCGTGAT GGTGCTCGGC ATCTCGATCG CGCGGTCGAT CACCAGGCCG CTCAGCGGGC TGAACGCCGG CATCCGCCGC CTCGGCGACG GCGAACTCGA CCTGGTGCTC CCGGGTCTGC AACGAACCGA CGAGATCGGC GACATGGCGC GCGCGGTGGA GTCCTGCAAG CTGAAGGCCG AGGAGCGCGC CGCAGCAGAA GCCGCCGCCA AGGCGGATCA GGACCGGCTG GCCGCGCAGC AGCGCAAGGG CGAGATGATC GCGCTCGCCG CCAAATTCGA AGACGCGGTC GGCGAGATCG TCGAGACCGT GTCATCGGCC TCGACCGAGC TGGAAGCGTC GGCAACCACC CTGACCTCGA CCGCCGATCA CGCCCAGCAG TTCACCACCC TGGTCGCGGC CGCCTCCGAG GAGGCGTCCA CCAATGTGCA GTCGGTGGCA TCGGCCAGCG AAGAGATGGC ATCCTCGGTC AACGAGATCA GCCGCCAGGT CCAGGAGTCG GCGCGGATCG CCAGCGAAGC GGTCACGCAA GCACAGGTCA CCAACGAGCG CGTCAGCCAC CTGTCCGAAG CCGCATCGCG GATCGGCGAC GTGGTCGAAC TGATCAACAC CATCGCGGCG CAAACCAACC TGCTGGCGCT GAACGCCACG ATCGAAGCAG CGCGCGCTGG CGAAGCCGGC CGCGGCTTCG CCGTGGTGGC GGCGGAGGTG AAGCAGCTCG CCGAACAGAC CGCCAAAGCC ACCGACCAGA TCAGCCAGCA GGTCGGCGGC ATCCAGAGCG CCACCGACCA GTCGGTGAGC GCGATCCGGC AGATCGGCGA AACCATCGCG CGGATGTCGG AGATCGCCGC GACCATCGCG TCCGCGGTGG AAGAACAGGG CGCCGCGACC CAGGAGATCT CACGCAACGT CCACCATGCC GCCGAAGGTG CGCACCAGGT CTCGGTGAAC ATTGTCGAGG TCCAGCGCGG CGCCTCGGCG ACCGGCTCGG CATCGGCGCA GGTGCTGTCC GCGGCGCAGT CGCTGGCGCA CGACAGCACC CGGCTGAAGG ACGAAGTCGG CCGCTTCCTC CGAACAGTGC GGGCAGCGTA G
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Protein sequence | MSLRLGLTSK INSIALVGII GVLAFGALYL IGTSSQDAAR LIDDRARALG DSNAKLQIAM LEQRRAEKNF MLRKDEQYLG MFQQSGRVAT EMLADMIRQT EATGQTDLTR SLKSVQDGFE NYQSQFGRFA EATVKLGLKE DLGLEGSLRA SVHGVEKSIS SFDAPALMVQ MLMMRRHEKD FMLRRHPKYG EAMKKQSAEF AKLLAASDLP QTAKTEITQK LDAYQRDFSA WMENALALDR AEKDMVTTYR ALQPALDELS STVRQQADLA KTMAATARQA TEQRMQIAII AIILTVMVLG ISIARSITRP LSGLNAGIRR LGDGELDLVL PGLQRTDEIG DMARAVESCK LKAEERAAAE AAAKADQDRL AAQQRKGEMI ALAAKFEDAV GEIVETVSSA STELEASATT LTSTADHAQQ FTTLVAAASE EASTNVQSVA SASEEMASSV NEISRQVQES ARIASEAVTQ AQVTNERVSH LSEAASRIGD VVELINTIAA QTNLLALNAT IEAARAGEAG RGFAVVAAEV KQLAEQTAKA TDQISQQVGG IQSATDQSVS AIRQIGETIA RMSEIAATIA SAVEEQGAAT QEISRNVHHA AEGAHQVSVN IVEVQRGASA TGSASAQVLS AAQSLAHDST RLKDEVGRFL RTVRAA
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