Gene Rpal_2025 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRpal_2025 
Symbol 
ID6409685 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRhodopseudomonas palustris TIE-1 
KingdomBacteria 
Replicon accessionNC_011004 
Strand
Start bp2197148 
End bp2199214 
Gene Length2067 bp 
Protein Length688 aa 
Translation table11 
GC content65% 
IMG OID642711911 
Productmethyl-accepting chemotaxis sensory transducer 
Protein accessionYP_001991023 
Protein GI192290418 
COG category[N] Cell motility
[T] Signal transduction mechanisms 
COG ID[COG0840] Methyl-accepting chemotaxis protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.0110809 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCCTAGTG CTCAATCGTC GCCTGTCCCG CACAGTTCTG CGGGCCTGTT TTCGTTCTTC 
ACCAACCGCA AGATCGGGGT GAAAATCGCC ATCGGCTTCG CCGCCGTGCA GGTGCTGATG
GCCGTCCTGG CCGTCCTCAA TTATTCCAGC TTCGGCAAGG TCGGTGATGC GTTCGCCAAG
TTCGATCAGC GGGTCGGAGT CGTCGACGCC GTGCGCGACG TCGAACAGGA TTTCAATTCG
TTTCGCCGCA CCGTGCGCGA ATACAGCCTC ACCGGCGAAG ACTTCCTGAT CGCCGAAGCC
ACCAAACGCC GCACTGAGCT GCAGGATCAC ATCAAGCAGT CGCTGCAGCA GATTCACGGG
TCCAGCCGTC ACGCCGCGAT GGCCGACCTC AGCAACAAGG TCGATTCGTA TGTCGGCCAG
TTCGATAGCC TAACCAAGCT ACGCCAGGAT CAGAACCGTC TGTCGCTGAC CGTGCTGGGG
CCGGTCGGAC AGCGGATCGT CAGCAAGCTC GAGCAACTGC AGTCCTCCAC CATGAGCGGT
GACGGCAACA GCGATCAGGC GCTCCTGGTG GCGCAGTCGC TGAAGCAGTT CCTGCTGCTG
CGCCTCGGCG CCGCCAAGGT GCTGGGTATC CGCCTCGAAA AGGCCGCGCA GGCGAGTGCC
GAAAAGGCGC TGGCTGATTT CCGGACGTCG CTGTCGACGA TGAAGACCGC GCTGACCGGC
GACGCTGAGC GCAAGCAGTT GGCCGCGATC GAGGCGGATC TTGCCATCTA CGCGGACGGC
TTCCAGCAGT CGGTGCGCGA CGTCAACGAC ATCGACGCGA CCATCGGGTC GATGACCAAG
GTCGCCGAGT CGCTCGCGGG CGACGCTGCC GCGATCAAGC AGTCCGGCGT CGCTGAATCG
AAGCAGATCG GCCATCAGAC CGAAGCGCTG ATCGGCGAGA CCCAGAACCA GATCGTATTC
ATCACTCTCG GTGCGATGGC GATTGGTCTG GTGCTCGCCT GGCTGATCGG TCGTGCGGTG
TCCCGTCCGA TCGTGGCGAT GTCCGGAGTG ATGAAGGAGC TCGCCGCCGG CAACACCAAT
GTCGAGATCG TCGGCTCCGG CCGCTTGGAC GAAATCGGCC TGATGGCCTG CACGGTCGAA
GTGTTCCGCA ACCATTCGAT CGAATTCGAC CGGCTGAAGG CCGAGCAGGA GGAAGCCGAG
CGCCGTGTCG CTGCTGAGCA CAAGGCGGAG ATGCAGCGCC TCGCCGATCA CTTCGAAGGC
GCGGTCGGCG AGATCATCGA CACTGTGACC TCTGCTTCGA CCGAACTCGA AGCTTCGGCC
GGTACGCTGA CGACCACCGC CGAACACTCG CAGATGCTCG CCGGCTCTGT CGCCGCGGCT
TCCGAGCAGG CCTCCGCCAA TGTGCAGTCG GTGGCGTCGG CCACCGAAGA GATGGCGTCC
TCGATCACTG AGATCAGCCG TCAGGTGCAG GAAGCGGCCC GGATCGCCAA CGAAGCCGTG
GAGCAGGCGC GCAAGACCAA CGACCGGATC GGTACGCTCG CGCAGGCGGC GAACCGGATC
GGCGACGTGG TCGATCTGAT CAACACCATC GCCGGCCAGA CCAATCTGCT TGCGCTCAAC
GCCACGATCG AGGCGGCGCG CGCGGGCGAT GCCGGTCGCG GTTTCGCGGT GGTGGCACAG
GAAGTGAAGG CGCTCGCCGA ACAGACCGGA AAGGCGACCG GGGAGATCAG CTCCCAGATC
GGCAGCATGC AATCGGCGAC GCAGGAGTCG GTCGGTGCGA TCCGCGAGAT CGGCGGCACC
ATCGAGCGGA TGTCGGAGAT CGCCTCGACG ATCGCGTCCG CGGTCGAAGA GCAGGGCGCT
GCGACGCAGG AGATCTCGCG CAACGTACAG CAGGCTGCGC GCGGCACCCA CGAGGTCTCG
TCCAACATCG CCGACGTCCA GCGCGGTGCG ACCGAGACCG GCTCGGCCTC GTCGCAAGTG
CTGTCCGCCG CACAGTCGCT GTCGCGCGAC AGCACACGCC TGAAGGACGA GGTCGATCGC
TTCATGGAAA CGGTGCGGGC GGCGTAA
 
Protein sequence
MPSAQSSPVP HSSAGLFSFF TNRKIGVKIA IGFAAVQVLM AVLAVLNYSS FGKVGDAFAK 
FDQRVGVVDA VRDVEQDFNS FRRTVREYSL TGEDFLIAEA TKRRTELQDH IKQSLQQIHG
SSRHAAMADL SNKVDSYVGQ FDSLTKLRQD QNRLSLTVLG PVGQRIVSKL EQLQSSTMSG
DGNSDQALLV AQSLKQFLLL RLGAAKVLGI RLEKAAQASA EKALADFRTS LSTMKTALTG
DAERKQLAAI EADLAIYADG FQQSVRDVND IDATIGSMTK VAESLAGDAA AIKQSGVAES
KQIGHQTEAL IGETQNQIVF ITLGAMAIGL VLAWLIGRAV SRPIVAMSGV MKELAAGNTN
VEIVGSGRLD EIGLMACTVE VFRNHSIEFD RLKAEQEEAE RRVAAEHKAE MQRLADHFEG
AVGEIIDTVT SASTELEASA GTLTTTAEHS QMLAGSVAAA SEQASANVQS VASATEEMAS
SITEISRQVQ EAARIANEAV EQARKTNDRI GTLAQAANRI GDVVDLINTI AGQTNLLALN
ATIEAARAGD AGRGFAVVAQ EVKALAEQTG KATGEISSQI GSMQSATQES VGAIREIGGT
IERMSEIAST IASAVEEQGA ATQEISRNVQ QAARGTHEVS SNIADVQRGA TETGSASSQV
LSAAQSLSRD STRLKDEVDR FMETVRAA