Gene Rpal_5120 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRpal_5120 
Symbol 
ID6412814 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRhodopseudomonas palustris TIE-1 
KingdomBacteria 
Replicon accessionNC_011004 
Strand
Start bp5503504 
End bp5505195 
Gene Length1692 bp 
Protein Length563 aa 
Translation table11 
GC content65% 
IMG OID642715005 
Productmethyl-accepting chemotaxis sensory transducer 
Protein accessionYP_001994084 
Protein GI192293479 
COG category[N] Cell motility
[T] Signal transduction mechanisms 
COG ID[COG0840] Methyl-accepting chemotaxis protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones31 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGTTCGCCA AGATCACCAT ACGTACCAAG ATTACTGCGC TGGTCGCTGC GCTGCTGATT 
GCCCTGTCGG GTCTCGGTGC ACTGGCGGTG GTCGAAATGC GGTCGTTGAA CGCCGCATCG
ACCGACATCG CCACCAACTG GCTGCCGAGC GTCCGGATTC TTGGCGAAAT GCGCGCCTAT
CTGCTCGGTT ATCGCGGCGC ATTGCGCGAT CACATCCTGG ATCTGAGCGC CGAGGGTAAG
GATGCTGCTG ACAAGCGGAT GGCCACGACC CAGGCATCGC TGGATAAGGC GCTCAAGGAC
TACGACAAGC TGGTGTCCTC TTCAGAGGAG CGGGCTTTAT ACGAGGACTT TGCCAAGGGA
TGGACCGACT ACAAGGCCGC CGTCGGAAAG GCACTCGAGA TCTCGCGCGG CAGCGTGGGC
CAATTTCCAG CGTCGGCATG GGACTACGTG AAGAAGAACC TGGTCCCGAT CGCGACTCGG
ATGGATGAAA CGCTGCAGAA GGATATCGAC CTCAACAACA AGGGAGCGCA GACGTCGACA
GAGACGGCTG ACACCACCTA CAGCTTCGGC TTTGGCCTGG TCGTCACGAT CCTCGCGCTT
GCCTTTGCGC TCGGCATTGC CATGAGCGTG CTGGTGATCC GCGACATCAC CCTCGCCATC
GCCTCGATCA TCTCGCCGAT GCAGGAGCTC GGGAAGGGCA ATCTCGCCGC CGACGTGCCG
CATCGCGGCG AGTCGACAGA AATCGGCCGG ATGGCGGACG CGCTGCAGGT CTTCAAGGAA
GCGCTGGTCG CCAAGCGTGA TGCCGATGCG GCGGCCGCCA AGGAAGCCGA GGAGAAGATC
GCCCGCGCCC AGCGCGTCGA CAGCGCAACC CGCCAGTTCG AGCACGCCAT CGGCGAGATC
GTCGACACCG TGTCGTCGGC CTCCACCGAG CTCGAAGCGT CCGCCAGCAC GCTGACCTCG
ACCGCCGAGC GCGCCCAGGA ACTGGCGACG TCGGTGGCCG CGGCCTCTGA AGAAGCCTCG
ACCAACGTGC AGTCGGTGGC GTCGGCGACC GAGGAGATGA CCTCGTCGAT CACCGAGATC
AGCCGTCAGG TGCAGGAATC GGCACGCATC GCCAACGATG CGGTCGATCA GGCGCGTCGG
ACCAACGAGA GCGTCAGCGA TCTGTCGCAC GCCGCGGCGC GGATCGGCGA TGTGGTCGAG
CTGATCAACA CCATCGCCGG CCAGACCAAC CTGCTGGCAC TCAATGCCAC CATCGAGGCG
GCACGTGCCG GCGAGGCCGG TCGCGGCTTC GCGGTGGTGG CGGCCGAGGT GAAAGCGCTG
GCGGAGCAGA CCGCCAAGGC CACCGGCGAG ATCAGCCAGC ACATTACCGG CATTCAGACT
GCGACCGGCC AATCGGTCGA TGCCATCAAG GAGATCGGTC AGACCATCGG CCGGATGTCG
GAGATCGCCT CGACCATCGC CTCGGCGGTG GAAGAACAGG GCGCCGCCAC GCAGGAAATC
TCCCGCAACG TGCAGCAGGC CGCGCACGGC ACCCAGCAGG TGTCGTCGAA CATCACCGAC
GTGCAGCGCG GCGCCACCGA GACCGGCTCG GCCTCGTCGC AAGTGCTCTC CGCCGCACAG
TCACTGTCGC AGGACAGCAA CCGGCTGAAG GTTGAGGTCA CCAAATTCCT CGAAACCGTG
CGGGCGGCGT AA
 
Protein sequence
MFAKITIRTK ITALVAALLI ALSGLGALAV VEMRSLNAAS TDIATNWLPS VRILGEMRAY 
LLGYRGALRD HILDLSAEGK DAADKRMATT QASLDKALKD YDKLVSSSEE RALYEDFAKG
WTDYKAAVGK ALEISRGSVG QFPASAWDYV KKNLVPIATR MDETLQKDID LNNKGAQTST
ETADTTYSFG FGLVVTILAL AFALGIAMSV LVIRDITLAI ASIISPMQEL GKGNLAADVP
HRGESTEIGR MADALQVFKE ALVAKRDADA AAAKEAEEKI ARAQRVDSAT RQFEHAIGEI
VDTVSSASTE LEASASTLTS TAERAQELAT SVAAASEEAS TNVQSVASAT EEMTSSITEI
SRQVQESARI ANDAVDQARR TNESVSDLSH AAARIGDVVE LINTIAGQTN LLALNATIEA
ARAGEAGRGF AVVAAEVKAL AEQTAKATGE ISQHITGIQT ATGQSVDAIK EIGQTIGRMS
EIASTIASAV EEQGAATQEI SRNVQQAAHG TQQVSSNITD VQRGATETGS ASSQVLSAAQ
SLSQDSNRLK VEVTKFLETV RAA