Gene RPC_3161 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRPC_3161 
Symbol 
ID3972597 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRhodopseudomonas palustris BisB18 
KingdomBacteria 
Replicon accessionNC_007925 
Strand
Start bp3504946 
End bp3507141 
Gene Length2196 bp 
Protein Length731 aa 
Translation table11 
GC content65% 
IMG OID637926271 
Productmethyl-accepting chemotaxis sensory transducer 
Protein accessionYP_533022 
Protein GI90424652 
COG category[N] Cell motility
[T] Signal transduction mechanisms 
COG ID[COG0840] Methyl-accepting chemotaxis protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.072786 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones19 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGATGGCGT CCTTCTCTTT CAAGACTATG CGATCAGTCC AGCTGAAGAT CGCATTGATC 
TCGGGCGCCT GCCTGGTGGG AACGAGCGTC GCCCTGATCG GCTACAGCGT ATTCTCCGCC
CGCAGCACCA TGCAATACGT CGAAACCGAG GTGTCGCAGC TGGTCGATCG GCAGACCAAG
GAGAACCTGC TCAGCAGGGC CGCCAGCGAG GCCAACGCGA TCAAGGCGGA GCTGGAACTC
GGACTGGACG CGGCGCGCAC CATGGCGCAG TCATTCGCCG TGCTCGCCGG CAAGGCCGCC
GCGACGCCCA CCGAGGCGCG CCGCGCCCAA TTGAACGCCG TGCTGCGCAA CGTCGTCGAT
CTCAATCCCT CCTTCAACGG CACCTACTCG GCCTGGGAGC CGGACGGCCT CGACGGCAAC
GACGCCGCAT TCAAGGGCCG CAAGGAGCTC GGCTCCGACG GCACCGGCCG CTTTCTGCCG
TACTGGACCC GCGACTCCAA AGGCTCGATC GCGGTGCAGC CGCTGGTCGA ATACGACAGC
GCCGAACGGC ACCCCAATGG CCTGGTGAAG GGCGCCTGGT ACATCAACCC GCTTACCACT
GGCAAAGAGA ATATTCTCGG GCCGCTGCCC TATATCGTTC AGGGCCAGCA GGTGTTCCTC
GCCACCATGT CGGTCCCGGT GATGATCGAC GGCAAATTCC ACGGCGTCGC CGGAGCTGAC
TACAATCTGG ATTTCGTGCA AAAACTGGCC CTGCAGATCA ATGGATCGAT CTTCGAAGGC
AAGGGCAAGG TCACCATCAT CAACGATACC GGCCTCACCG TCGCCAACAG CGCCGGCGCG
GAATTCATCG GCAAGAGCGC AAGCACATCG GATGCGCGTT GGAATGACGG CATCGCCAGC
ATCCGCGCCG GCAAGGCGCT GGTGCAGGAC GATCCGCAAT CAGCCAATAT CGATATCTAT
TCGCCGATCA AGGTCGGCAA CACTGGCTCC GCCTGGGCCG TGGTGATCTC GATCCCGCGC
GCCGTGGTGC TGGCCGGCGT GCGCCAGCTC GACGACTCGC TGGCGTCACG TGCGGCGGCC
ACCACCTACT GGCAGCTCGG CGTTGGTTTG GTCATCATCG CGATCGCGAT CTTCCTGATC
TCGTTGGCCT CCTCCAGCAT CGCGCGTCCC ACCAAGCGCT GCGCCGAATT CGCCCATGGC
ATCTCGAAGG GCGACTTCGA GCAGAAGCTG GATATCGAGC AGGCCGACGA GGTCGGCGTC
CTCGCGGCTG CCCTGCGCGG CATGCAGGAC GACCTCAAGC GCAGAATCGC GCAGCGGATC
GAGGATCAGG CCGCCGCCGA TACGCAGCGA CGCGAAACCA TGCACAGACT GGCCAATGCC
TTCGAAGCCT CGGTCGGCGA GATCGTCGAA ACCGTGTCGT CCTCGTCGAC CCAGCTGGAA
GCCTCCGCCA ACACCCTGAC TGCCACCGCG GAGCGCTCAC AGGAACTGGC CACCACCGTC
GCCGCCGCCT CCGAAGAAGC CTCGACCAAC GTGCAATCGG TGGCGTCCGC CACCGAGCAG
ATGGCGTCCT CGGTCAACGA GATCAGCCGC CAGGTGCAGG AATCCGCGCG GATCGCCGGC
GAGGCGGTCG ACCAGGCCAA GAACACCAAC GACCGGGTCG GCGAACTGTC GCAGGCGGCC
AGCCGGATCG GCGACGTGGT CGAACTGATC AACACCATCG CCGGGCAGAC CAATCTGTTG
GCGCTGAACG CCACCATCGA AGCGGCGCGG GCCGGCGAGG CCGGGCGTGG TTTTGCGGTG
GTCGCCTCGG AGGTGAAGGC GCTCGCCGAG CAGACCGCCA AGGCGACCGG CGAGATCAGC
CAGCAGATCA GCGGCATTCA GACCGCGACG CAGGGCTCGG TGGCGGCGAT CAAGCAGATC
GGCACCACGA TCGGCCGAAT GTCGGAAATC GCCTCGACCA TCGCCGCGGC GGTGGAGCAG
CAGGGCGCCG CCACGCAGGA AATCTCCCGC AACGTGCAGC AAGCGGCGCA AGGCACCATG
CAGGTGTCGT CGAACATCAC CGACGTCGAG CGCGGCGCCT CGGAGACCGG ATCGGCGTCT
TCGCAGGTGC TGTCCGCGGC GCAGTCGCTG TCGCGCGACA GCAACCGGCT GAAGTTGGAA
GTCAGCAAGT TTTTGGACTC GGTGCGGGCG GCGTAA
 
Protein sequence
MMASFSFKTM RSVQLKIALI SGACLVGTSV ALIGYSVFSA RSTMQYVETE VSQLVDRQTK 
ENLLSRAASE ANAIKAELEL GLDAARTMAQ SFAVLAGKAA ATPTEARRAQ LNAVLRNVVD
LNPSFNGTYS AWEPDGLDGN DAAFKGRKEL GSDGTGRFLP YWTRDSKGSI AVQPLVEYDS
AERHPNGLVK GAWYINPLTT GKENILGPLP YIVQGQQVFL ATMSVPVMID GKFHGVAGAD
YNLDFVQKLA LQINGSIFEG KGKVTIINDT GLTVANSAGA EFIGKSASTS DARWNDGIAS
IRAGKALVQD DPQSANIDIY SPIKVGNTGS AWAVVISIPR AVVLAGVRQL DDSLASRAAA
TTYWQLGVGL VIIAIAIFLI SLASSSIARP TKRCAEFAHG ISKGDFEQKL DIEQADEVGV
LAAALRGMQD DLKRRIAQRI EDQAAADTQR RETMHRLANA FEASVGEIVE TVSSSSTQLE
ASANTLTATA ERSQELATTV AAASEEASTN VQSVASATEQ MASSVNEISR QVQESARIAG
EAVDQAKNTN DRVGELSQAA SRIGDVVELI NTIAGQTNLL ALNATIEAAR AGEAGRGFAV
VASEVKALAE QTAKATGEIS QQISGIQTAT QGSVAAIKQI GTTIGRMSEI ASTIAAAVEQ
QGAATQEISR NVQQAAQGTM QVSSNITDVE RGASETGSAS SQVLSAAQSL SRDSNRLKLE
VSKFLDSVRA A