Gene RPC_4406 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRPC_4406 
Symbol 
ID3970421 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRhodopseudomonas palustris BisB18 
KingdomBacteria 
Replicon accessionNC_007925 
Strand
Start bp4911035 
End bp4912735 
Gene Length1701 bp 
Protein Length566 aa 
Translation table11 
GC content65% 
IMG OID637927515 
Productmethyl-accepting chemotaxis sensory transducer 
Protein accessionYP_534248 
Protein GI90425878 
COG category[N] Cell motility
[T] Signal transduction mechanisms 
COG ID[COG0840] Methyl-accepting chemotaxis protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones18 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones14 
Fosmid unclonability p-value0.341232 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTCCTGGC TCAATAATTT CAAGATCATC TACAAGATCA TCCTGATCGT CGGCCTGATG 
GCGATAGTGA CGCTCGGGAT CGTCGGCTTT GCGGCCGGCC AGATGCAAGA GATGGATGAT
GCCAACACCG ATATGGTGAC CCGGATCGAC AAGTCGTCGA CGCTGGCGGT GCGCGCCGCC
AGGCGTGCCG AGAACTACGT CTCGACCGCG TTCCATCTGC TGGCGGAAAC CTCCGGCGCC
GGTAACGCCA GGTTGCTGGC GCAGGCCAAG GAGAGCCGGC AATCGTTCGA GAAGGGCATG
GCATCGGTGC TGCAAGCCAT GCCGGAGCAG GCCACGCTGA TCAAGCCGGT GATCGCCCAA
TTCCAGACCG CGTTCGCTGC GTGCGACCCG GTCATTGAAT TTGCCTCCAC CACGTCCTCG
ACCGAGGACA ATCTGATCGC CGCGACGCGC CTCAAGACGG AATGTGTCCC GGTGGTCGAG
GCCGGCATCA AGGCCCATAT CGCGATGGTC GATACCATGC TCGCCGATGC AGGCAAGGCG
TCCGATTTGA TGTCGGCGCG CGCCGCCAGC TCGATCCGTA CGGTGTGGGC GGCGGGAATT
GTCGGTCTGC TGTTAGCGTT CGCTATCGCG ATGTGGATCG GCAGCAAGGG ATTGGCGCAG
CCGATCGGCT CGCTCAAAAG CGTGATGGAA GTGTTCGCGC ACGGCGATTT CAAAGCCAGC
GTACCCAGCA TCGAGCGCCG CGACGAGATC GGCGAGATGG CCCGCACCGT CGAGGTGTTC
AAGACCAACG GCCTTGCGGT CGAACGAATG AAAGAAGAGC AGGCCACGGC CGAACGCACC
GCCATCACCC AGCGCAAGAC CGAGATGAGC AAATTGGCCG CCGATTTCGA AAGCGCGGTC
GGCGAGATCA TCCAGACCGT GTCGTCGGCG GCGACCGAGT TGGAAGCCTC CGCCGGCACC
TTGTCGGCGA CCTCGGAGCG CGCCGAGCAG CTCACCACGG TGGTTGCGGC GGCTTCGGAA
GAGGCCTCCA CCAATGTGCA GTCGGTGGCC TCGGCGACCG AGGAGATGAG CTCGTCGGTC
AACGAGATCA GCCGCCAGGT GCAGGAATCC TCGCGCATCG CCAGCGAGGC GGTGCAGCAG
GCGCAGAACA CCAACGACCG GGTCGGCGAA CTGGCCAAGG CGGCGGCGCG AATCGGCGCC
GTGGTCGAAC TGATCAACAC CATCGCCGGG CAGACCAACC TGTTGGCGCT GAACGCGACG
ATCGAAGCCG CGCGCGCCGG CGAGGCCGGT CGCGGCTTCG CGGTGGTGGC CTCCGAGGTG
AAAGCCCTCG CCGAGCAGAC CGCCAAGGCC ACCGGCGAGA TCGGTCAGCA AATCGCCGGG
ATTCAAGCTG CCACCCAGGA GTCGGTCGGC GCGATCAAGG AGATCGGCGA TACTATCGGC
AAGATGTCGG AGATCGCCGC CACCATTGCC TCCGCGGTGG AAGAGCAGGG GGCGGCCACG
CAGGAAATCT CCCGCAACGT GCAGCAGGCG GCGCTGGGCA CCCAGCAGGT CAGTTCCAAC
ATCACCGATG TGCAGCGCGG CGCCTCCGAG ACCGGCTCGG CCTCCTCGCA GGTGTTGTCG
GCGGCACAGA CGTTGTCGCG CGACAGCAGC CGGCTGAGGC AGGAAGTCAG CAAGTTCATG
GACACGGTGC GCGCCGCTTA A
 
Protein sequence
MSWLNNFKII YKIILIVGLM AIVTLGIVGF AAGQMQEMDD ANTDMVTRID KSSTLAVRAA 
RRAENYVSTA FHLLAETSGA GNARLLAQAK ESRQSFEKGM ASVLQAMPEQ ATLIKPVIAQ
FQTAFAACDP VIEFASTTSS TEDNLIAATR LKTECVPVVE AGIKAHIAMV DTMLADAGKA
SDLMSARAAS SIRTVWAAGI VGLLLAFAIA MWIGSKGLAQ PIGSLKSVME VFAHGDFKAS
VPSIERRDEI GEMARTVEVF KTNGLAVERM KEEQATAERT AITQRKTEMS KLAADFESAV
GEIIQTVSSA ATELEASAGT LSATSERAEQ LTTVVAAASE EASTNVQSVA SATEEMSSSV
NEISRQVQES SRIASEAVQQ AQNTNDRVGE LAKAAARIGA VVELINTIAG QTNLLALNAT
IEAARAGEAG RGFAVVASEV KALAEQTAKA TGEIGQQIAG IQAATQESVG AIKEIGDTIG
KMSEIAATIA SAVEEQGAAT QEISRNVQQA ALGTQQVSSN ITDVQRGASE TGSASSQVLS
AAQTLSRDSS RLRQEVSKFM DTVRAA