Gene BBta_1536 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagBBta_1536 
Symbol 
ID5152711 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameBradyrhizobium sp. BTAi1 
KingdomBacteria 
Replicon accessionNC_009485 
Strand
Start bp1617203 
End bp1619353 
Gene Length2151 bp 
Protein Length716 aa 
Translation table11 
GC content59% 
IMG OID640556500 
Productmethyl-accepting chemotaxis protein 
Protein accessionYP_001237658 
Protein GI148253073 
COG category[N] Cell motility
[T] Signal transduction mechanisms 
COG ID[COG0840] Methyl-accepting chemotaxis protein 
TIGRFAM ID[TIGR00229] PAS domain S-box 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.566253 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones27 
Fosmid unclonability p-value0.284447 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCGCACCA ATCTTCCTGT GACGACCGTC GAATATCCGA TCTCCGATGA AACCATCATC 
GTCTCCAAGA CGGATCTGAA AGGGAAACTG ACCTATTTCA ACGCGGCGTT TGTCGCTGCG
TCGGGCTTTA CCGAGGCGGA GCTGATAGGG CAGCCACACA ACATCGTCCG CCACCCCGAC
ATGCCGCCGG AAGCGTTCGC TAATCTCTGG GAGACACTAA AGGGCGGCAA TCCCTGGGTT
GGCGCGGTGA AGAACCGCCG CAAGAACGGG GATTTCTATT GGGTTCTGGC TACCGCCTCG
CCGGTGCGTG AGAACGGCCA GATCGTCGGC TATACCTCAA TTCGAACCAG GCTTTCCGCC
GACCAGCGTG AGGAGGCTGA AAAGGTCTAC AAGCTGCTGC GCGACAGGAA GGCGCAGGAC
TACAGGATTA GCGCAGGTGT GATCCGGCGC CGGTCGGTCG TCGATCGGCT GTCGTTCTTC
ACCGGCACAT TGAAGGCGCG CTTGACGATG CTCGTTTCCG TACTCGCTGT GTTCATGGTC
GTTGCGGCGC TGACCGGCAT CCTGTCGACG CGCGCCAGCA ATATCCGAAT GAAATCGATT
TACGAAGACC GAACGGTGCC GCTGTCTCAA TTGCTTGAGA TCAATGATCG CATGCTGCAA
AACGCGACGC TGCAATACGA AGCAGCTGCC AACGGCCGTG CCGAGAGGCC GGTTGGCGAC
GTCGCGTCTA AGGTCAGCGC GAACATCGAA CGAATTACCA AGGTCTGGGG TGACTATCTG
ACGACTTATT TCACGCCAGA GGAAAAAGCC CTTGCAGAAA GCTTCTCCTC GAAGCGCAAG
AATTATGCGG ACAACGCCGT TAAGCCTGCG CTTGCTCTGC TTGGCGAACG CAAGTTCGAC
GAAGCCAATC TGCTGCTGGC GGGCAAGGCG GGCGAATTCT TTGCGGCCGC CAAGCAGGAT
CTCGACAAGC TCGTGGAGAT CCAGGTCAAG GAAGCCCAGC GGGAGTACGA TACGGCCATC
CATGAATATA TTGTCGCGAT CGTGATAGCT TCCATCATTC TCCTGGTCGG CCTGTTGTTG
GGTGGATGTA TTGGAACGCA AACCATTCGC AGCGTGCTGC GGCCATTGAA AGTCCTGAAC
GAAACGATGC TCAATATAGC GATGGACAAG CTCGACAACC GCATTCCAGT CGAGCACGAC
GACGAACTCG GCGAGGCGCT GCGCAACATG CAGAACGTCC AGGCCATCGT CCGGTTCAAT
GCCGCAGAGG TGAAGGCCGT CGAACAGCAG GCGGCCGCGC AACGCAAATT CGATATGGCG
CGGCTCGCCA GCGAGTTCGA GGGGGCCGTC GGAAACATCA TCGAGACCGT GTCCTCTGCC
TCAAATGATC TGGAATCATC AGCCTCCACG CTGTCTTCGA CCGCAACTCG TTCCCAGCAG
CTTGCGACCG CGGTGGCGGC CGCCTCCGAG GAAGCCTCGA CCAACGTCCA ATCGGTTGCT
TCCGCCGCCG AAGAGCTGAC CTCTTCCGTC CACGAGATCA GCCGTCAGGT TCAGGAGTCG
GCCCGGATTG CCAGCGGGGC CGTCGAACAA GCCCGCACGA CGAATGAGCG GGTCAATGAA
TTGTCAAAAG CCGCTGCACG CATCGGTGAC GTCGTTGAGC TGATCAACAC CATTGCCGGA
CAAACCAATC TTCTCGCCTT GAATGCCACC ATTGAGGCGG CCCGCGCCGG CGAGGCCGGA
CGAGGTTTTG CAGTGGTTGC GTCCGAGGTA AAGGCCCTCG CCGAGCAGAC CGCCAAAGCC
ACTGGCGAAA TCGGCCAGCA AGTATCCGGC ATTCAGGCAG CAACCCAGGA TTCGGTGATG
GCGATCAAGG AGATCAGCTC GACGATCGAG CGCCTGTCGG AGATCTCTTC GGCGATCGCA
GCGGCCGTGG AAGAGCAAGG CGCCGCCACT CAGGAGATTT CTCGAAACAT CCAGCAGGCC
TCACGGGGCA CGGAGGAGGT CTCCTCGAAT ATCGTTGATG TTCAGCGCGG GGCCAGCGAA
ACCGGGGCCG CCTCATCTCA TGTCCTGTCG GCTGCGCAGT CGCTGTCAAA CGAGAGTACC
TATCTGAGAA CGGAGGTAGG CAAGTTTCTC GACGTCGTGC GGGCGGCTTG A
 
Protein sequence
MRTNLPVTTV EYPISDETII VSKTDLKGKL TYFNAAFVAA SGFTEAELIG QPHNIVRHPD 
MPPEAFANLW ETLKGGNPWV GAVKNRRKNG DFYWVLATAS PVRENGQIVG YTSIRTRLSA
DQREEAEKVY KLLRDRKAQD YRISAGVIRR RSVVDRLSFF TGTLKARLTM LVSVLAVFMV
VAALTGILST RASNIRMKSI YEDRTVPLSQ LLEINDRMLQ NATLQYEAAA NGRAERPVGD
VASKVSANIE RITKVWGDYL TTYFTPEEKA LAESFSSKRK NYADNAVKPA LALLGERKFD
EANLLLAGKA GEFFAAAKQD LDKLVEIQVK EAQREYDTAI HEYIVAIVIA SIILLVGLLL
GGCIGTQTIR SVLRPLKVLN ETMLNIAMDK LDNRIPVEHD DELGEALRNM QNVQAIVRFN
AAEVKAVEQQ AAAQRKFDMA RLASEFEGAV GNIIETVSSA SNDLESSAST LSSTATRSQQ
LATAVAAASE EASTNVQSVA SAAEELTSSV HEISRQVQES ARIASGAVEQ ARTTNERVNE
LSKAAARIGD VVELINTIAG QTNLLALNAT IEAARAGEAG RGFAVVASEV KALAEQTAKA
TGEIGQQVSG IQAATQDSVM AIKEISSTIE RLSEISSAIA AAVEEQGAAT QEISRNIQQA
SRGTEEVSSN IVDVQRGASE TGAASSHVLS AAQSLSNEST YLRTEVGKFL DVVRAA