Gene RPC_4580 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRPC_4580 
Symbol 
ID3971879 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRhodopseudomonas palustris BisB18 
KingdomBacteria 
Replicon accessionNC_007925 
Strand
Start bp5112093 
End bp5113784 
Gene Length1692 bp 
Protein Length563 aa 
Translation table11 
GC content65% 
IMG OID637927691 
Productmethyl-accepting chemotaxis sensory transducer 
Protein accessionYP_534421 
Protein GI90426051 
COG category[N] Cell motility
[T] Signal transduction mechanisms 
COG ID[COG0840] Methyl-accepting chemotaxis protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.174371 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones22 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCTGACAA ACCTATCCAT CCGCGCCAAG ATCACGATCG TGGTCTCGTT CTTGCTGATC 
ACCTCGACGG CGATGGGCAT TCTCGCCGTC ATGAAGATGA GTTCGATCAA CGCCAGCACC
GTGGAGATCC AGAGCGTCTG GCTGCCGAGC GTGCGCGCGC TCGGTGACCT GCGCGCCGCC
GCCGCCAGCT ATCGTGGCAT CGTGCGACTG CACGTCTTGA GCGAAACGAT TGAGACCAAG
GCCGCCGCGG CGAAGCGACT GGAGGCCGCC TCGAAGGCGA TGACGGACAT TCGCGAGAAT
TATCTGAAGT TGATCCAGGC GGAGGACGAG CGCACGCTGT TCAAGAACTG GACGCAACAA
TGGAATAACT ACGAAGACGC CGTGCAGCAG GTGCTGGTGC TGTCGCGCGA GGGCGCCGGC
CGGGTGCCGC ACGAGGCGTT CGAATTCAAC GAGACCAAAG CCTACCCGAT CGGCAAGACC
GCAGATCTGA CCCTGGATCG CGCGATCAAC ATCAACAAAG GCGCGGCGGA TGCCGCCGGG
GTCTCCAGCG CCGAACATTT CAACGCGGCG TTTTTGCTCA TCGCGGCGAT CTTGGCAGGC
TCGGCGGCGA TCGGGATCGG CCTGGCGATC TATCTGGTGC GCAGCGTGTC GAGCGGGATC
GGCTCGATCG TCTCGCCGAT GCAGGCGCTG GGCAAGGGTG ACCTCGGTGT GATGGTGCCG
CATCAGGGCG AGCGCACCGA GATCGGCGTG ATGGCCGACA CCTTGCAGGT GTTCAAGCAG
GCGCTGATCG ACAAGCAGGC AACCGACGAG GCGGCGGCGC GCGAGGCCGA AGCCAAGATT
CTGCGCGGCC AGCGGGTCGA CAGCATCACC CGGGATTTCG AGGCGATGAT CGGCGAGATC
GTCGAGACGG TGTCGTCGGC CTCCACCGAG CTGGAAGCCT CGGCGAGCAC GCTGACCTCG
GCGGCCGAGC GCGCGCATCA ACTGACCAAC ACCGTCGCGG CGGCGTCGGG CGAAGCGTCC
AGCAACGTGC AATCGGTGGC CTCGGCCACC GAGGAATTGA GCTCCTCGGT CAACGAGATC
GGCCGTCAGG TGCAGGACTC GGCACGGATC GCCAACGCCG CCGTTAACCA GGCGCAAAAG
ACCAATCATC GCGTCGGAGA GCTGGCCAAG GCCGCAGCCC GGATCGGCGA CGTTGTCGAA
CTGATCAACA CCATCGCCGG ACAGACCAAT CTGTTGGCGC TGAACGCCAC CATCGAAGCC
GCCCGCGCCG GCGACGCCGG CCGTGGCTTC GCGGTGGTGG CCTCGGAAGT GAAGGCTTTG
GCCGAACAGA CCGGCAAGGC GACCGGCGAG ATCAGCCAGC AGATCAACGG CATTCAGATC
GCCACCCAGG AGTCGGTCGA CGCCATCAAG GAGATCGGCG AAACCATCGG GCAGATGGCG
GAGATCGCAT CGACGATCGC CTCGGCGGTG GAGCAGCAGG GCGCGGCCAC CCAGGAAATC
TCCCGCAACG TTCAGCAGGC CGCGCGCGGC ACCGAGCAGG TGAGTGCCAA TATCGGGCAA
GTGCAGCGCG GCGCCAGCGA AACCGGTTCG GCCTCCTCAC AAGTGCTGTC GGCGGCGCAG
TCGCTGTCGC ACGACAGCAC CAGGCTGAAG GACGAGGTCG GCAAATTCCT GACCTCGGTG
CGGAGCGCCT GA
 
Protein sequence
MLTNLSIRAK ITIVVSFLLI TSTAMGILAV MKMSSINAST VEIQSVWLPS VRALGDLRAA 
AASYRGIVRL HVLSETIETK AAAAKRLEAA SKAMTDIREN YLKLIQAEDE RTLFKNWTQQ
WNNYEDAVQQ VLVLSREGAG RVPHEAFEFN ETKAYPIGKT ADLTLDRAIN INKGAADAAG
VSSAEHFNAA FLLIAAILAG SAAIGIGLAI YLVRSVSSGI GSIVSPMQAL GKGDLGVMVP
HQGERTEIGV MADTLQVFKQ ALIDKQATDE AAAREAEAKI LRGQRVDSIT RDFEAMIGEI
VETVSSASTE LEASASTLTS AAERAHQLTN TVAAASGEAS SNVQSVASAT EELSSSVNEI
GRQVQDSARI ANAAVNQAQK TNHRVGELAK AAARIGDVVE LINTIAGQTN LLALNATIEA
ARAGDAGRGF AVVASEVKAL AEQTGKATGE ISQQINGIQI ATQESVDAIK EIGETIGQMA
EIASTIASAV EQQGAATQEI SRNVQQAARG TEQVSANIGQ VQRGASETGS ASSQVLSAAQ
SLSHDSTRLK DEVGKFLTSV RSA