Gene Nham_1080 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagNham_1080 
Symbol 
ID4031608 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameNitrobacter hamburgensis X14 
KingdomBacteria 
Replicon accessionNC_007964 
Strand
Start bp1214300 
End bp1216396 
Gene Length2097 bp 
Protein Length698 aa 
Translation table11 
GC content61% 
IMG OID637969578 
Productmethyl-accepting chemotaxis sensory transducer 
Protein accessionYP_576388 
Protein GI92116659 
COG category[N] Cell motility
[T] Signal transduction mechanisms 
COG ID[COG0840] Methyl-accepting chemotaxis protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.0139762 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAAGGCGA AGATCAGCGT TACTCTGCCT GCTATCATCT CCGCGCTCGT CCTGATAGGC 
GCCCTTGCCG CCGGAATGGC GGCGTACCAA GCGTACGAAC TGCGACAGAA ATCCGAAGCA
TTTCTCGAAG TGAACCATAT CTCGCAGTTG CTGTTACGAA GCGCCGGGCA ATGGGCGGTC
GAGCGCGGGC TCACGAACGC GCCGCTGAAG TCGCCCGATG CCCTGCCTAC CGAACTCCGT
CCCCAGATCG TCAACACTCG GCAAACCGCC GATCGCGCAT TTTCGGAGGC CGCTCAACTG
TTGCACGGGA TTCCGGCGAT GAAATCCGCA CAGACGCAAC TTTCGGAGGC CGAGAGCACG
TTCCAGTCGT TCGTCGGTTT TCGCACGAGG CTCGATGAGA ATCTTCCCAA ACGGGGATCG
GAACGGAGCC CGGAGGTCGT CGAGGGCTTC TCACCGGCAA TCACCAAGCT GATCGACGTC
TCCGGCAACA GGCTGCGACT GACATTGGAA ACGCTGACCC GTCCGCCTAC CGCGGCTCTG
ACGCAATTGG TCAGCGTACG TAATTTGACT GCGCAGATGG CCGAGAACGC CGGGAGAGAA
CGTGCGTTGG TCGGAGGGAT CGTCGGCTCC CGCGCCAAGA TCTCCACGAG CAGCTTCCGG
ACCATCGCTC GTTTCCGCGG AAATGTAGAG TTGGCATGGG AAACGATCTC ACCGCTGCGG
ATGCGCACCG ACTTGCCGAA AAAAGTCACG GATGCGATCT CGGGCGTCGA GAAGGACTAT
TTCCAGACCT ATGGCCAGAC ACGCGACGGC GTGTTCGCGA CAGCCGAGAC GGGTGAGTAC
ACGATCAGCG GCAACGACTA TGTTGCGCGG GCGACCACCG CGATCAATTC GATCCTTCGG
CTGGCCGATG CGGTCGGTGA AGCGGCCGAT CAAGAAGCTA CAAACGAAGC CGCAAACAGC
ACGTCCAAAC TGCTCATTGC CGGATTGATA TTGCTCGGCT GTATCGCTCT CGCGCTGATC
AGCTTCTGGA TTGCGTTCTC GCGGATCCTG CGACCGCTGT CTGCGCTGAC CGGAGCGATG
GGTGAACTCG CGAAAGGCAA TTTTGCCGTG GTCCTGCCTG GACTCGACCG CAAGGACGAG
ATGGGCGACA TGGCGCGTGC GGTCGAGACC TTCAAAGTCA AGGCCGAGCA GAAAGCGCGC
GACGAAGCGG AAGCCAAGAT GCAGCAGGAT CAACTTGCCG CCCAACAGCG CAAGGCGGAC
ATGCACAGGC TAGCCGACAG TTTCGAGGCG GCGGTCGGCG AAGTGATCCA GACGGTATCC
TCGGCAGCAA CCCAACTCGA AGGCTCGGCG ACCTCGCTGA CCCGGACAGC CGAACAGACC
CATCAGCTTT CATCCGCTGT GGCCGCGGCC TCCGAGGAAG CAACGGTCAA TGTTCAGTCC
GTGGCCTCGG CCAGCGAGGA GATGGCCGCG TCCGTCACCG AAATCAGCCG GCAGGTCCAG
GAAGCGTCGA GGATCGCGAG CGACGCGGCG CAAAAGGCGC ATAGCGCCGA CCAGCGGATC
ACTTCGCTGT CGCAGGCATC CACCAAGATC GGAGACGTGG TTGAACTCAT CAACACGATT
GCCAGCCAGA CGAACCTCCT GGCGCTCAAC GCAACCATCG AGGCCGCTCG CGCCGGCGAG
GCCGGCCGCG GCTTCGCCGT CGTGGCGTCC GAGGTGAAGG CTCTGGCCGA GCAGACCGCC
AAGGCGACCG CCGAAATCGG CCAGCAGATC ACGAACATCC AGGCGGCGAC GGATGACTCC
GTCGTTAACG TGAAAGAAAT CGGCGTTGTC ATCGGCAGGA TTGCGGAGAT CTCCGCGACG
ATCGCCTCGG CAGTCGAAGA GCAAGCGTCT GCAACTCAGG AAATATCCCG CAACGTTCAG
CAGGCAGCGG CCGGAACCTC GGAAGTTTCC TCCAATATTA TCGAGGTCAG CAACGGAGCG
TCCGAAACCG GTGGCGCCTC TACACAAGCC CTGGCAGCGG CAAAGACTCT GGCCGGCAAT
ACCGATCGCC TCAAGCTGGA GGTCGAAAAG TTCCTCGCAA CGGTCAGAGC CGCCTAA
 
Protein sequence
MKAKISVTLP AIISALVLIG ALAAGMAAYQ AYELRQKSEA FLEVNHISQL LLRSAGQWAV 
ERGLTNAPLK SPDALPTELR PQIVNTRQTA DRAFSEAAQL LHGIPAMKSA QTQLSEAEST
FQSFVGFRTR LDENLPKRGS ERSPEVVEGF SPAITKLIDV SGNRLRLTLE TLTRPPTAAL
TQLVSVRNLT AQMAENAGRE RALVGGIVGS RAKISTSSFR TIARFRGNVE LAWETISPLR
MRTDLPKKVT DAISGVEKDY FQTYGQTRDG VFATAETGEY TISGNDYVAR ATTAINSILR
LADAVGEAAD QEATNEAANS TSKLLIAGLI LLGCIALALI SFWIAFSRIL RPLSALTGAM
GELAKGNFAV VLPGLDRKDE MGDMARAVET FKVKAEQKAR DEAEAKMQQD QLAAQQRKAD
MHRLADSFEA AVGEVIQTVS SAATQLEGSA TSLTRTAEQT HQLSSAVAAA SEEATVNVQS
VASASEEMAA SVTEISRQVQ EASRIASDAA QKAHSADQRI TSLSQASTKI GDVVELINTI
ASQTNLLALN ATIEAARAGE AGRGFAVVAS EVKALAEQTA KATAEIGQQI TNIQAATDDS
VVNVKEIGVV IGRIAEISAT IASAVEEQAS ATQEISRNVQ QAAAGTSEVS SNIIEVSNGA
SETGGASTQA LAAAKTLAGN TDRLKLEVEK FLATVRAA