Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | RPC_4407 |
Symbol | |
ID | 3970422 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Rhodopseudomonas palustris BisB18 |
Kingdom | Bacteria |
Replicon accession | NC_007925 |
Strand | - |
Start bp | 4913239 |
End bp | 4914939 |
Gene Length | 1701 bp |
Protein Length | 566 aa |
Translation table | 11 |
GC content | 64% |
IMG OID | 637927516 |
Product | methyl-accepting chemotaxis sensory transducer |
Protein accession | YP_534249 |
Protein GI | 90425879 |
COG category | [N] Cell motility [T] Signal transduction mechanisms |
COG ID | [COG0840] Methyl-accepting chemotaxis protein |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 15 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 14 |
Fosmid unclonability p-value | 0.365939 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGTCGCTGC TGAACAATTT CAAGATTACA TTCAAGATCG TGCTGATCGT TACGTTGATG GCGATGCTGA CGATCGGCGT GGCGAGTTTC GCGTCCGTCC GCTTGAAAGC CGTCGATGAA AATTACACGG ATCTGGTGGA TCGGGTCGGC AAGTTCACCT CGATGACCCT GCTTGCCTCC AGCCAGGCCA ACGCCTATAT CGCCGCGACG TTTCAATTGG CGGTGGAAAC CACCGACGCC GGCAATACCA AGTACCTCGG CGCGCTTGGC GACAGCCGCA AGGCTTACGA GACGATGATC GCCCAGGTGC AGCGCGGCCT GCCGGAGCGG GCCGCGCTGA TCGAGCCGGT CGCCGCGAAA TTTTACAGCG CCTTCGGTGC TTGCGCCCCG GTAATCGATT TTGCGTCGAA GACCACTTCG CCGGAGGGCG CCCTGAAGGC CGCGGCTCGG CTGCAGGCCG AATGCGTCCC CTTGATCGAA TCCGCGATCG CGGCGCAGAC CAAGCTGGTC GAGGCGCTGC TGCTGGCTGC CGCGAAAGGG TCCGACCAAT TGACCGTGGA TACCAACTCC GCGGTGATGA CGGTGCTGGC CGCCAGTGCG GTTGGTTTGC TGGTGATCTT TGCGCTGGCG ATGTGGATCG GCATTAAGGG AATGGCGCAA CCGATCGGCC AGTTGAAGGT CGTGATGGAA GCCTTCGCCC GCAACGATCT CACCGCCGAC GTTCCCAGCA AGGAGCGCCG CGACGAGATC GGCGAGATGG CCCGCACCGT CGAGGTGTTC AAGACCAACG GCCTCGAAGT CGAACGGTTG AAGCAGGAGC AGATCGTGGC CGAACAGAGC GCGATCACGG TGCGCAAGAC CGAGATGAAC AAGCTGGCCC ATGATTTCGA AAGCGCGGTC GGCGAGATCA TTCAGACCGT GTCGTCGGCG GCGACCGAGT TGGAAGCCTC CGCCACCACT TTGTCGGCGA CGTCCGAGCG CGCCGAGCAA CTCACCACGG TGGTCGCCGC GGCTTCGGAA GAAGCCTCCA CCAATGTGCA GTCGGTGGCT TCGGCCACCG AGGAGATGAG CTCGTCGGTC AACGAGATCA GCCGCCAGGT GCAGGAATCC TCGCGCATTG CCAACGAGGC GGTGCAGCAG GCGCAGAAGA CCAACGACCG GGTCGGCGAA CTGGCCAAGG CGGCGGCGCG GATCGGCGAC GTCGTCGAAC TGATCAACAC CATCGCCGGG CAGACCAACC TGTTGGCGTT AAACGCCACG ATCGAGGCGG CCCGCGCCGG CGAGGCCGGT CGCGGTTTCG CGGTGGTCGC CTCCGAGGTG AAAGCGCTCG CCGAGCAGAC CGCGAAGGCG ACCGGCGAGA TCGGCCAGCA GATCACCGGC ATTCAGGCCG CCACCCAGGA ATCGGTCGGT GCGATCCGGG AAATCGGCGA CACTATCGGC AAGATGTCGG AGATCGCCGC CACCATTGCC TCCGCGGTGG AAGAGCAGGG CGCCGCCACC CAGGAAATCT CCCGCAACGT GCAGCAGGCG GCGCTGGGCA CCCAGCAGGT CAGTTCCAAC ATCACCGACG TGCAGCGCGG CGCCTCCGAG ACCGGTTCGG CCTCCTCGCA GGTACTGTCG GCGGCACAGA CGTTGTCGCG CGACAGCAGC CGGCTGAGGC AGGAAGTCAG CAAGTTCATG GACACCGTGC GCGCCGCTTA A
|
Protein sequence | MSLLNNFKIT FKIVLIVTLM AMLTIGVASF ASVRLKAVDE NYTDLVDRVG KFTSMTLLAS SQANAYIAAT FQLAVETTDA GNTKYLGALG DSRKAYETMI AQVQRGLPER AALIEPVAAK FYSAFGACAP VIDFASKTTS PEGALKAAAR LQAECVPLIE SAIAAQTKLV EALLLAAAKG SDQLTVDTNS AVMTVLAASA VGLLVIFALA MWIGIKGMAQ PIGQLKVVME AFARNDLTAD VPSKERRDEI GEMARTVEVF KTNGLEVERL KQEQIVAEQS AITVRKTEMN KLAHDFESAV GEIIQTVSSA ATELEASATT LSATSERAEQ LTTVVAAASE EASTNVQSVA SATEEMSSSV NEISRQVQES SRIANEAVQQ AQKTNDRVGE LAKAAARIGD VVELINTIAG QTNLLALNAT IEAARAGEAG RGFAVVASEV KALAEQTAKA TGEIGQQITG IQAATQESVG AIREIGDTIG KMSEIAATIA SAVEEQGAAT QEISRNVQQA ALGTQQVSSN ITDVQRGASE TGSASSQVLS AAQTLSRDSS RLRQEVSKFM DTVRAA
|
| |