Gene RPD_1857 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRPD_1857 
Symbol 
ID4022339 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRhodopseudomonas palustris BisB5 
KingdomBacteria 
Replicon accessionNC_007958 
Strand
Start bp2076248 
End bp2077939 
Gene Length1692 bp 
Protein Length563 aa 
Translation table11 
GC content63% 
IMG OID637962050 
Productchemotaxis sensory transducer 
Protein accessionYP_568993 
Protein GI91976334 
COG category[N] Cell motility
[T] Signal transduction mechanisms 
COG ID[COG0840] Methyl-accepting chemotaxis protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones17 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones14 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTTCGATC GCCTTTCGAT CCGCAGTAAG ATCACGATTG TTCTCACCGT ACTGCTCGTC 
ACGATGAGCA GCCTTGGCGG TCTCGCTCTG CTGAAAATGC AGGCTATCAA CACGACTTCG
GTGGATCTCG CGAGCAATTG GCTTCCGAGC GTTCGAGCCC TCGGCGAATT GCGGGCGGCG
GGCATCACCT ATCGCAACGT CATCCGACAG CACATGCTGT CATTCACTGT CGAAGACAAG
CAGGCGATGG AAAAGTCGCT CGAGACCGTC AAGGTCGGCC TCGCCAAGGC GCGTGCGACC
TACGAAGCGA TGATCGTGTT GCCCGAAGAG CGCGCGTTGT ACAACCAGTG GTCGCAGATT
TGGGATGAAT ATGTCCGGGG AGCTGAACAG GTGATCGCGA AGTCCCGTGT CGACATCGGC
AAGGTCTCGC AGGAAGCTGC TGACTTCAAC GCCAAAACCG TCAATCCGAT CGCGGTGAGG
GCCGACGAAG TGCTGCAGAA GGACATCGAC CTCAACAACA AGGGCGGCGA CGACGCCAGC
AAAACCGCAG CCGACACATT CCGATCTGCG CTGTACCTTG TGGTCGGCAT TCTCGCGTTC
GCTGCCATTG CTGGGCTCGG CCTCGGCGTC ATGTTGGTCC GCGACGTCTC CCGCAACATC
GCGTCGATCA TCGAGACGAT GCAGGCGCTG GGGCGCGGCG ACCTGACGGC GACGGTGCCG
CACCGGGGCG AGAAGACCGA GATCGGTTCG ATGGCCGACG TGCTGCAGGT GTTCAAGGAG
GCGCTGATCG ACAAGAAGGC GGCCGACGAG GCGGCATCTC TCGAAGCTGA AGCCAAGATC
GCGCGCGGCC AGCGGGTCGA CTCTATTACC CGCCAATTCG AATCCATGAT CGGCGAGATC
GTGCAGACGG TGTCGTCGGC CTCCACCCAA CTCGAAGCCT CTGCCGGCTC GCTGTCCTCG
ACGGCAGAGC ACTCGCAGGA GATCACCACG CTCGTCGCCT CTGCTTCCGA GGAAGCATCC
AACAACGTTC AGTCGGTGGC GTCAGCGACC GAGGAGATGG CTTCTTCCGT CAACGAGATC
AGCCGTCAGG TGCAGGATTC TGCTCGGATC GCCAACGAGG CGGTGGAGCA GGCCCGGCGC
ACCAACGATC GCGTCGGCGA GCTCGCCCAG GCCGCGACGC GGATCGGGGA CGTGGTCGAG
CTGATCAACA CCATCGCCGG TCAGACCAAT CTGCTGGCGC TGAATGCCAC CATTGAGGCG
GCGCGCGCCG GCGAGGCGGG CCGCGGCTTC GCGGTCGTCG CCAGCGAGGT CAAGGCGCTG
GCCGAACAAA CCGCGAAGGC GACCGGTGAG ATCAGCCAGC AGATCACCGG CATTCAGGCG
GCCACCCAGG ACTCGGTCGG CGCGATCAAG GACATCGGCG ATATCATCGG CCGGATGTCG
GAGATTGCCT CGACCATCGC GTCCGCGGTT GAAGAGCAGG GCGCTGCCAC TCAGGAGATC
GCTCGCAACG TTCAGCAGGC AGCTCTGGGC ACGCAGCAAG TGTCCGCCAA CATCGTCGAC
GTTCAACGCG GCGCGAGCGA ATCCACCGCT GCGTCGACTC AGGTGTTGTC GGCCGCGAAG
TCGCTCTCGA CCGAGAGCAA CCGGTTGAAA CTCGAAGTCG GCCAGTTCCT GGATTCAGTG
CGCGCCGCCT GA
 
Protein sequence
MFDRLSIRSK ITIVLTVLLV TMSSLGGLAL LKMQAINTTS VDLASNWLPS VRALGELRAA 
GITYRNVIRQ HMLSFTVEDK QAMEKSLETV KVGLAKARAT YEAMIVLPEE RALYNQWSQI
WDEYVRGAEQ VIAKSRVDIG KVSQEAADFN AKTVNPIAVR ADEVLQKDID LNNKGGDDAS
KTAADTFRSA LYLVVGILAF AAIAGLGLGV MLVRDVSRNI ASIIETMQAL GRGDLTATVP
HRGEKTEIGS MADVLQVFKE ALIDKKAADE AASLEAEAKI ARGQRVDSIT RQFESMIGEI
VQTVSSASTQ LEASAGSLSS TAEHSQEITT LVASASEEAS NNVQSVASAT EEMASSVNEI
SRQVQDSARI ANEAVEQARR TNDRVGELAQ AATRIGDVVE LINTIAGQTN LLALNATIEA
ARAGEAGRGF AVVASEVKAL AEQTAKATGE ISQQITGIQA ATQDSVGAIK DIGDIIGRMS
EIASTIASAV EEQGAATQEI ARNVQQAALG TQQVSANIVD VQRGASESTA ASTQVLSAAK
SLSTESNRLK LEVGQFLDSV RAA