Gene RPD_0497 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRPD_0497 
Symbol 
ID4020965 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRhodopseudomonas palustris BisB5 
KingdomBacteria 
Replicon accessionNC_007958 
Strand
Start bp571384 
End bp573117 
Gene Length1734 bp 
Protein Length577 aa 
Translation table11 
GC content65% 
IMG OID637960684 
Productchemotaxis sensory transducer 
Protein accessionYP_567636 
Protein GI91974977 
COG category[N] Cell motility
[T] Signal transduction mechanisms 
COG ID[COG0840] Methyl-accepting chemotaxis protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones19 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones15 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTGCGCGT CTTCTCACAG CGCACTGGAA CCGTCCTCGA TGAAAATCCG GATCACAATT 
TCGGCGATGA TCGTGCTTTT CGGCGTAATC ACCGCGATCG GCCTTGCCGC GATGCTGGCC
ACCAGCACGT TCGCACTCAA GCAATTGCGC GTCGGCGGGC CGCTGTATTC GCAGATCCAG
CTCGGCAACG ATCTCGTCGC CGATATTCTG CCGCCTCCGG CTTACGTCAT CGAAGCCTAT
CTGGAAGCGA CGCTGGCGCT ACGCAAACCG TCGGAACTGG CCGCCCACCA GGCGAGACTG
GCGCAGCTTC ACAAGAGCTA TTCGGAACGC AAGGACTATT GGTCGTCGAA ATCCGAACTC
GATCCGTCGG TCAAGAAGAG ACTGACGGTC GATTCCGACG CCGAGGTCCA GAAGTTCTGG
AAGGTCGCCG AGCAGGACAT GATCCCCGCT TTGAGCAAGG GCGACAAGGC CCGCGCCGAA
GCGGCGTATG CAGAGCTCGA AACGATCTAT CAGGCTCATC GCAGCATCAT CGACGACATC
GTCAAGAAGG CCAACAACGA GAATTCCGAG CTCGAAAAAG TCGCCGCAAC GCAGGTCGAC
TCCTATTCGA TGGTGACCTG GGTGGTTTCC GGCCTGGTGG TGACGCTGAT CGTTCTGGGT
GTTCTGGGAA TCGCAATCGG CCTGGTGCGT CCGGTCGTTC GCCTGACATC CGCGCTCGAG
GAGATGGCCG GCGGCAATCT CGACGTCGCG ATCCCGGGAG CCGGCCGCGG CGACGAGATC
GGCGGCATGG CGCGGGCGGT TTCGGCGATC AAAGCGAATG CCGAGCAGAA AGCGCGCGAC
GAGGCCGAGG CCAAGAACAG GCTCGACCGG CTCGCCGCCG AGCAGCGCAA GGCGGACATG
GCCCGTCTCG CCGACAGTTT CGAAGGGGCG GTCGGTGAGA TCATCGAGGT CGTGTCGTCG
GCCGCGACCG AACTCGAGGC GTCCGCGCGC TCGCTGTCGT CGACCGCGGA GCGTTCGATC
GATCTGGCGA CCGGCGTCGC GGCGGCGTCC GCGGAAGCCT CCTCAGGCGT GCAATCGGTC
GCCTCCGCCA GCGAGGAACT GACCGCTTCG GTCGCCGAGA TCAGCCGTCA GGTGCAAAGC
TCCGCCCGCG TCGCCAACGA GGCGGTGGAT CAGGCTCAGA AGACCAACAG CCGGGTCGGC
GAGCTGTCGA GTGCGGCAGC GCGTATCGGC GACGTCGTCG AGCTGATCAA CACCATCGCA
GGCCAGACCA ATCTGCTGGC GCTGAATGCG ACGATCGAGG CGGCACGCGC CGGCGAGGCC
GGCCGCGGGT TCGCGGTCGT GGCTTCGGAA GTGAAGGCGC TGGCCGAACA GACCGCGAAG
GCCACGGGCG AGATCGGCCA GCAGGTCGCC GGCATCCAGG CGGCGACCGA GGAATCGGTG
GTGGCGATCA AGCAGATCGG CAACATCATC GGCCAGATGT CCGAGATTTC CTCCACGATC
GCCTCGGCGG TGGAAGAGCA AGGCGCGGCG ACGAAGGAAA TCTCCGCCAA CATCCAGCAG
GCGGCCCACG GCACGTCACT GGTCAGCTCG GATATCGCCA ACGTCAAAGG CGGCGCGCAG
GAAACCGGCG CGGCCTCCGC GCAGGTGCTG TCGTCGGCGC AATCGCTGTC CAAAGAGAGC
AACCGCCTCC GGGTCGAGGT CGGTAATTTC CTCTCCTCGG TGCGGGCCGC CTGA
 
Protein sequence
MCASSHSALE PSSMKIRITI SAMIVLFGVI TAIGLAAMLA TSTFALKQLR VGGPLYSQIQ 
LGNDLVADIL PPPAYVIEAY LEATLALRKP SELAAHQARL AQLHKSYSER KDYWSSKSEL
DPSVKKRLTV DSDAEVQKFW KVAEQDMIPA LSKGDKARAE AAYAELETIY QAHRSIIDDI
VKKANNENSE LEKVAATQVD SYSMVTWVVS GLVVTLIVLG VLGIAIGLVR PVVRLTSALE
EMAGGNLDVA IPGAGRGDEI GGMARAVSAI KANAEQKARD EAEAKNRLDR LAAEQRKADM
ARLADSFEGA VGEIIEVVSS AATELEASAR SLSSTAERSI DLATGVAAAS AEASSGVQSV
ASASEELTAS VAEISRQVQS SARVANEAVD QAQKTNSRVG ELSSAAARIG DVVELINTIA
GQTNLLALNA TIEAARAGEA GRGFAVVASE VKALAEQTAK ATGEIGQQVA GIQAATEESV
VAIKQIGNII GQMSEISSTI ASAVEEQGAA TKEISANIQQ AAHGTSLVSS DIANVKGGAQ
ETGAASAQVL SSAQSLSKES NRLRVEVGNF LSSVRAA