Gene RPB_0489 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRPB_0489 
Symbol 
ID3909834 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRhodopseudomonas palustris HaA2 
KingdomBacteria 
Replicon accessionNC_007778 
Strand
Start bp547666 
End bp549360 
Gene Length1695 bp 
Protein Length564 aa 
Translation table11 
GC content65% 
IMG OID637882376 
Productmethyl-accepting chemotaxis sensory transducer 
Protein accessionYP_484111 
Protein GI86747615 
COG category[N] Cell motility
[T] Signal transduction mechanisms 
COG ID[COG0840] Methyl-accepting chemotaxis protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones10 
Plasmid unclonability p-value0.301128 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones16 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCTCGCAA AATTCTCAAT TCGTACCAAG ATCACGACGC TCGTCGCGGC TCTGTTGATC 
GCCATGTCGG GCCTGGGCGC GATCGGGCTG CTGAAAATGC AGGGGATCAA CGCCGCCACG
GTCGAGATCA CCAGCAACTG GCTGCCGACC GTCATGACCC TCGGCGATAT GCGGGCCGAA
GTCATCAGCT ATCGGATGAA GCTGCGAAAT CACCTGCTGG AGACGAACGC CGGCCGCATG
GCCGACATCG AAAAGCAGTT GGCCGACAAC GAAGACAGGA TCAAGAAGGC CCAGAATGGC
TATGAGCCGC TGATCTCGTC TCCGGAGGAG CGGCAGATCT ACGAAACATG GGTCAGCGAA
TGGGCGAAAT ACCGGGCCGT GGTCCCGAAG CTGCTGGAGC TGTCGCGCAA CAGCCCTGAA
GGACGGATCT CGGTCGAGGG TGTGGAGATG CTGTCGCGCA CCTTCAATCC GATCGGTGAG
CGTATGGACG AGGCGATGAA CAAGGACCTC GCGTTCAACA ACAAGGGCGC CCACCATGCG
AGCGAAACCG CCGCATCGAC CTACAGCTCG GCCTTCTTCA TCGTGGTGTC GATCCTCGGC
GTGGCGATCG TGGTCGGCGT CATCGCCAGC GTGATGGTGG TCCGCGACAT CACATCGGGC
ATCGCCGCGA TCATCAAGCC GATGCAGACG TTCGGCCAGG GCGATCTCTC CGCCGACGTG
CCCTATCGCG GCGCGAGTAC CGAAATCGGC GCGATGGCCG ATGCGCTGCA GGTCTTCAAG
GAAGCGCTGA TCGCCAAGAA GGCGGCCGAC GAAGCCGCGG CACATGAAGC CGAGGCGAAG
ATCGCCCGCG CCCAGCGCGT CGATACGGCG ACCCGCAAAT TCGAATCCGC GATCGGCCAG
ATCGTCGAGA CGGTGTCGTC GGCGTCGACC GAGCTCGAAG CCTCGGCCAG CACGCTCACG
GCCACTGCCG GCCACGCCCA GGAACTGACC ACCGCGGTTG CGGCGGCGTC GGAGGAAGCC
TCGACCAATG TGCAGTCGGT GGCCTCGGCG ACCGAAGAGA TGGCGTCGTC GGTCAACGAG
ATCAGCCGTC AGGTTCAGGA ATCGGCGCGG ATCGCCAATG ATGCGGTCGA TCAGGCGCGC
AAGACCAACG ACAGCGTCGG CATGCTGTCG GCGGCCGCGT CGCGGATCGG CGACGTCGTC
GAACTGATCA ACACCATCGC CGGCCAGACC AATCTGCTGG CGCTCAACGC CACGATCGAG
GCGGCGCGTG CCGGCGAGGC GGGCCGCGGC TTCGCGGTGG TCGCGAGCGA AGTCAAGGCG
CTCGCCGAGC AGACCGCCAA GGCGACCGGC GAGATCGGTC AGCAGATCTC CGGGATCCAG
GCCGCGACCG ATCAATCGGT GTCGGCCATC AAGGAGATCG GCATGACCAT CGGCCGGATG
TCGGAAATCG CCTCGACCAT CGCCTCGGCG GTGGAAGAGC AGGGCGCCGC GACCCAGGAA
ATCTCGCGCA ACGTGCAGCA GGCCGCGCAG GGCACGCAGC AGGTCTCCGC CAACATCACC
GACGTGCAGC GCGGCGCCAG CGAGACCGGT TCTGCGTCGT CGCAGGTCCT GTCCGCGGCG
AAATCGCTGT CGCAGGACAG CAACCGGCTC AAGGAAGAAG TCGCCACCTT CCTGGAGACG
GTGCGCGCGG CCTGA
 
Protein sequence
MLAKFSIRTK ITTLVAALLI AMSGLGAIGL LKMQGINAAT VEITSNWLPT VMTLGDMRAE 
VISYRMKLRN HLLETNAGRM ADIEKQLADN EDRIKKAQNG YEPLISSPEE RQIYETWVSE
WAKYRAVVPK LLELSRNSPE GRISVEGVEM LSRTFNPIGE RMDEAMNKDL AFNNKGAHHA
SETAASTYSS AFFIVVSILG VAIVVGVIAS VMVVRDITSG IAAIIKPMQT FGQGDLSADV
PYRGASTEIG AMADALQVFK EALIAKKAAD EAAAHEAEAK IARAQRVDTA TRKFESAIGQ
IVETVSSAST ELEASASTLT ATAGHAQELT TAVAAASEEA STNVQSVASA TEEMASSVNE
ISRQVQESAR IANDAVDQAR KTNDSVGMLS AAASRIGDVV ELINTIAGQT NLLALNATIE
AARAGEAGRG FAVVASEVKA LAEQTAKATG EIGQQISGIQ AATDQSVSAI KEIGMTIGRM
SEIASTIASA VEEQGAATQE ISRNVQQAAQ GTQQVSANIT DVQRGASETG SASSQVLSAA
KSLSQDSNRL KEEVATFLET VRAA