Gene Nham_1045 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagNham_1045 
Symbol 
ID4031651 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameNitrobacter hamburgensis X14 
KingdomBacteria 
Replicon accessionNC_007964 
Strand
Start bp1169121 
End bp1170815 
Gene Length1695 bp 
Protein Length564 aa 
Translation table11 
GC content63% 
IMG OID637969543 
Productmethyl-accepting chemotaxis sensory transducer with Pas/Pac sensor 
Protein accessionYP_576353 
Protein GI92116624 
COG category[N] Cell motility
[T] Signal transduction mechanisms 
COG ID[COG0840] Methyl-accepting chemotaxis protein 
TIGRFAM ID[TIGR00229] PAS domain S-box 


Plasmid Coverage information

Num covering plasmid clones18 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
GTGCGCAAAA ATTTTCCGGT TACCGATGAC GAATACCCCG TCTCCGACGA AACGCTGATC 
GTTTCCAGGA CCGATCTCAA AGGCCGTCTC TCCTATGTCA ACGAAGACTT CATCGACGCA
GCGGAATTCA CATCCGAGGA GTTGATCGGC AAGGCGCACA ACATCGTCCG CCACCCGGAC
ATGCCGGCGG AAGCGTTCGA GGATCTCTGG GACACCCTGA AGGCCGAGAA GCCCTGGGTC
GGAGCGATCA AGAACCGCCG CAAGAACGGC GGCTTCTACT GGGTGCTGGC GAGCGCCTCG
CCGCTCCGGC AGAACGGGCA GGTCACCGGC TATACCTCGA TCCGCACCAA GCTTGCCGCC
GACCAGCGCG CGCTGGCGGA AGACGTTTAT GCAGCCATTC GCGAAAAGCG GCCGCATCAA
TACCGGATCG ATGCCGGCAT CATCCGGAAA CGGTCGTTCT TCGATCGTTT CGGGCTGTTC
ACCCGCACCA TACGGGCGCG AATGACGACG CTGATCGCGC TGCAGGCTGC TTTTCTGCTC
ACCTGTGGTG TGCTGGGGGC AACCGTGGCT GGCGGGACGT GGGGCCTCGT CCTCGGCCTT
CTTGCCATTG CCGGGGTCGC CGTCGGGGGG ATCGTGGGAC GCCAGACGCT TCGTGCGTTT
GAGGGGCCGA TGCAGCACCT GAACGAGACG ATGCTGAACC TCGTCTACGA CAAGTTCGAC
AATCGCATCG AGATCAAGCG CGACGACGAG ATCGGCGAAG CACTCCGCAA CCTTCAGACC
GTTCAGACGC TGATTCGCTT CAGCCGGGAA GAGGTCAATT CCACGCAACG CCGGGCCGAG
GCCCAGCGCA AGACGGACAT GACGAGAATC GCCGATTCCT TCGAAGCGGC GATCGGCGAG
ATCGTTGGGG CTGTCGCGAC CTCAGCGACC GAACTGGAGG CTTCCGCAAC CACGCTCGCG
TCGAATGCCG ACCATGCAAA GGATTTTGCT GCACGCGTCG CCAACGGCTC GACCGAAGCC
TCCTCGAACG TCAATTCGGT GGCCTCGGCT ACGGAGCAGA TGACCGCCTC GGTTCGCGAA
ATCAGCCAGC GGGTGCAGGA ATCGGCGCGC ATGGCGGGCG ATGCCGTCGA TCAGGTGCAT
TCGGCGACGG AGCGCGTCAG CGCGCTGTCG AGCGCGGCGT CGCGCATCGG CGACATCGTC
GAGATGATCA ACAATATCGC GGGTCAGACC AACCTCCTCG CCCTGAACGC CACCATCGAG
GCGGCGCGCG CCGGGGAAGC CGGCCGGGGG TTTTCGGTCG TTGCCTCCGA AGTGAAGGCG
CTCGCCGAGC AAACCGGCAA GGCGACCGGC GAAATCGGCC AGCAGATCAG CGGCATCCAG
TCTGCCACGC AGGAATCCGT CGCCGCGATC AACGAGATCC GCAATTCCAT CGAAAAACTC
TCGGGAATCT CCTCCACGAT CGCGTCCGCC ATCGAGGAAC AGGGCGCGAC CACCCAGGAA
GTCTCCCGCA ATGTGCAGCA CGCCGCCCAG GGGGCGCAGG AAGTCTCCTC GAATGTCGGC
AATCTCCAGC GCGGAGCGGC GGAAACCGGA ACTGCATCGT CCCAGGTATT GTCCGCTGCG
CAAACGCTGT CGCGCGACAG CGCCCGGCTC AAGGCAGAGG TCAACAACTT CCTGAACTCC
GTTCGGGTTG CATAA
 
Protein sequence
MRKNFPVTDD EYPVSDETLI VSRTDLKGRL SYVNEDFIDA AEFTSEELIG KAHNIVRHPD 
MPAEAFEDLW DTLKAEKPWV GAIKNRRKNG GFYWVLASAS PLRQNGQVTG YTSIRTKLAA
DQRALAEDVY AAIREKRPHQ YRIDAGIIRK RSFFDRFGLF TRTIRARMTT LIALQAAFLL
TCGVLGATVA GGTWGLVLGL LAIAGVAVGG IVGRQTLRAF EGPMQHLNET MLNLVYDKFD
NRIEIKRDDE IGEALRNLQT VQTLIRFSRE EVNSTQRRAE AQRKTDMTRI ADSFEAAIGE
IVGAVATSAT ELEASATTLA SNADHAKDFA ARVANGSTEA SSNVNSVASA TEQMTASVRE
ISQRVQESAR MAGDAVDQVH SATERVSALS SAASRIGDIV EMINNIAGQT NLLALNATIE
AARAGEAGRG FSVVASEVKA LAEQTGKATG EIGQQISGIQ SATQESVAAI NEIRNSIEKL
SGISSTIASA IEEQGATTQE VSRNVQHAAQ GAQEVSSNVG NLQRGAAETG TASSQVLSAA
QTLSRDSARL KAEVNNFLNS VRVA