| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPD_1918 |
|---|
| Symbol | |
|---|
| ID | 4022400 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris BisB5 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007958 |
|---|
| Strand | + |
|---|
| Start bp | 2155174 |
|---|
| End bp | 2157240 |
|---|
| Gene Length | 2067 bp |
|---|
| Protein Length | 688 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 637962111 |
|---|
| Product | chemotaxis sensory transducer |
|---|
| Protein accession | YP_569054 |
|---|
| Protein GI | 91976395 |
|---|
| COG category | [N] Cell motility
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG0840] Methyl-accepting chemotaxis protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 12 |
|---|
| Fosmid unclonability p-value | 0.537222 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACCCGAA CAACCCAGTC GATTGCCGCA CCAGAGTCTT TCAGACTCCT CGCACTGTTT
ACCAATCTCA AGATCGGCAC CAAGATTTCG ATCGGCTTCG CCGCCCTTCA GGTGCTGATG
GCAGTGCTCG CCGTCATGAA CTACTCCAGC TTCGGTACGA TTGGGGCGGC GTTTACGTCG
TTCGGTCAAC GCGTCGAGGT CGTCGACGTC GCTCACGGGA TCGATCGCGG ATTCGGCTCC
TTCCGCAGCA TCGTGCAAGA ATACGGCCTG ACCGGAGACG ACGCCCTGCT CGGCGAAGCG
GAGCAGCGCA AGCAACAGCT CGCCGACAGC ATCGCGCAGG GCTCGCGGCA TATCCAGAGT
CCCGAGACCC AAGCTGTCAT GGCCGATATC GGCCGACAGT TCGGCACTTA CAGCATGCAG
TTCGCTGAGG TCATCAAGCT GCGGCAGAGT CAGAACCAGC TGACGCTCGA GGTGCTCGGT
CCGGTCGGCC AACGTATCAT GACCAAGCTC GAGCAATTGC AGAGCACGAC AATGGCCGGC
GATGGCAATA GCGGCAACGC GCTGCTGGTC GGGCAGGCGT TGAAGCAGGT CCTGTTGATG
CGGCTTGCCG TCGTCAAGGT GCTGGGGATC CGGATCGAGA AGGATGCGTC GACCGCTGCC
GAGAAGGCGC TGTCGGAGCT GAAGATCACG ATGTCGGCGC TGAAGACGTC GCTCCGCACC
GACGCGGAGC AGAAACAGAT CGGCGCGATC GAGACCGATC TCGCGCTGTA TTCCGACGGC
TTCCGTCGGG CGTCGCGGGA CGTCAGTGCG GTCGAGGCGA AGATCGGCGA GATGGCCCAG
ATCGCGCAGT CGCTGTCCGC TTCGGCCGTG CGAATCAATC AGACCGGCGT CGCCGAGCAG
AAGCAGATCG GAGATGAGAC CAGGGCGCTG GTCGCGGATA CAAGGTACCA AACGCTGATC
ATCACCATCG CGGCTCAGTT GCTCGGCTTC GTGCTCGGCT GGCTAATCGG TCGGGCGGTG
TCGCGCCCAA TCGTGAAGAT CTCCGACACG ATGCGGGAGC TTGCGTCCGG CAATCTCGAC
GTCGCCGTCG CCGGTTCGGG GCGGCAGGAC GAGATCGGCC TGATGGCCTG CACCGTCGAA
GTGTTCAAGA CCAATGCGCT CGACGTCCGG CGCTTGAAGG TCGAGCAGGA GGCGGCCGAG
CAGCGCGTCG CCGAGGAGCA CAAGGCGGAG ATGCGGCGGC TGGCCGATGA TTTCGAAGGT
GCGGTCGGCC AGATCATCCA GACCGTCACC TCGGCCTCGA CCGAACTGGA AGCCTCTGCC
GGCACGCTGA CGTCGACGGC TGATCGCTCG CAGGAGCTCG CGACCTCGGT TGCGGCGGCG
TCCGAGCAGG CGTCGGCCAA TGTGCAGTCG GTGGCCTCTG CGACCGAGCA GATGGCGTCG
TCGATCTCCG AGATCAGCCG CCAGGTTCAG GAATCGGCGC GGATCGCCGG AGAAGCGGTG
GATCAGGCGC GCAAGACCAA CCAGCGGATC GGCCACCTCT CCGAGGCGGC GAACCGGATC
GGCGATGTCG TCGACCTGAT CAACACCATC GCGGGACAGA CCAACCTGCT GGCGCTGAAC
GCCACAATCG AAGCGGCGCG CGCCGGCGAC GCTGGTCGCG GCTTTGCGGT GGTCGCCTCT
GAGGTCAAGG CGCTTGCCGA GCAAACTGCC AAGGCGACCG GAGAGATCAG CCAGCAGATC
AGCGGCATGC AGGCGGCGAC GCAGGACTCG GTCGGTGCCA TCCGTGAAAT CGGCGGCACC
ATCGAGCGGA TGTCGGAGAT TGCCTCGACG ATCGCTTCGG CGGTGGAGGA GCAGGGAGCT
GCGACCCAGG AGATCTCCCG CAACGTGCAG CAAGCGGCGC AGGGCACTCA CCTGGTCTCG
ACCAACATCA CCGACGTGCA GCGCGGCGCC ACCGAGACCG GTTCGGCTTC CTCTCAGGTC
CTCGCCGCCG CGCAATCGTT GTCGCGCGAC AGTGGCCTGC TGCGGCAGGA GGTCAGCCGC
TTTGTCGAGA CGGTGCGTGC GGCGTAG
|
|---|
| Protein sequence | MTRTTQSIAA PESFRLLALF TNLKIGTKIS IGFAALQVLM AVLAVMNYSS FGTIGAAFTS
FGQRVEVVDV AHGIDRGFGS FRSIVQEYGL TGDDALLGEA EQRKQQLADS IAQGSRHIQS
PETQAVMADI GRQFGTYSMQ FAEVIKLRQS QNQLTLEVLG PVGQRIMTKL EQLQSTTMAG
DGNSGNALLV GQALKQVLLM RLAVVKVLGI RIEKDASTAA EKALSELKIT MSALKTSLRT
DAEQKQIGAI ETDLALYSDG FRRASRDVSA VEAKIGEMAQ IAQSLSASAV RINQTGVAEQ
KQIGDETRAL VADTRYQTLI ITIAAQLLGF VLGWLIGRAV SRPIVKISDT MRELASGNLD
VAVAGSGRQD EIGLMACTVE VFKTNALDVR RLKVEQEAAE QRVAEEHKAE MRRLADDFEG
AVGQIIQTVT SASTELEASA GTLTSTADRS QELATSVAAA SEQASANVQS VASATEQMAS
SISEISRQVQ ESARIAGEAV DQARKTNQRI GHLSEAANRI GDVVDLINTI AGQTNLLALN
ATIEAARAGD AGRGFAVVAS EVKALAEQTA KATGEISQQI SGMQAATQDS VGAIREIGGT
IERMSEIAST IASAVEEQGA ATQEISRNVQ QAAQGTHLVS TNITDVQRGA TETGSASSQV
LAAAQSLSRD SGLLRQEVSR FVETVRAA
|
|---|
| |