Gene RPB_2653 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRPB_2653 
Symbol 
ID3910446 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRhodopseudomonas palustris HaA2 
KingdomBacteria 
Replicon accessionNC_007778 
Strand
Start bp3032049 
End bp3034124 
Gene Length2076 bp 
Protein Length691 aa 
Translation table11 
GC content66% 
IMG OID637884553 
Productmethyl-accepting chemotaxis sensory transducer 
Protein accessionYP_486266 
Protein GI86749770 
COG category[N] Cell motility
[T] Signal transduction mechanisms 
COG ID[COG0840] Methyl-accepting chemotaxis protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.00184965 
Plasmid hitchhikingNo 
Plasmid clonabilitydecreased coverage 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.0777916 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAGATCG GCCGCCTCTT TGCAATTTCG ATGCTTTCGG TGACGGCTCT GGCCATCCTC 
CCTGCTGCAC AGGTCGTGAT TGAGCAGGTC AGGGCTGTCA ACGACAAGGC CGATGCGATC
AAGACAGTGG AGGCATTCGG CGCCGTGCTG CTGTTCGCGC AGGAGGTCGT GAGCCACCGC
GCCCCCTACA TCGGGCCGCT GTTCCAGGAG CCGGTCGCGA CACCCGCGCA GCTCGAGGCG
GTGCGCAAGA TCAAGCAGTC GTCCGAAGCC GCCTTCGCCA AGGCGCGCGC GCAGGTCGCG
AACGTCTCCG AGACCGAAGC CATCCGCCGC AGCCTGGAGC AGGCCGCAGC CAAGCTGGCT
GACCTTCAAA CGTTGGTGGA ACCCAGCCTT TCCGCGCCGC TGAGCGGACG TGATCAAGCC
GCGATCAAGA GTTTCCTGCC CGGTATCGCG CAGACCGCCG TGGCGATCGA GCCGATCCTG
AATCGGCTTC AGAACCATGT TGCCAATGCG GATGCATCGC TGACGACCCT GCTCGACGTA
GCCCGCACCG CGCAGGATCT GCGCGTGACG GCGGGCGGAC GTGCGGCGTC GCTGTCGCCT
GCGCTCAACA CCCGGCGCGC GTTGACCGCG GCAGAGAAGG CAGCGATGGA CCGTGCCCAG
GGCCGTACCG AGATTGATCG TGACCGTCTG GAGGCCAGCA TCGACCAGAT CGGCAATCCG
GAGCGTCTGT TGGCCGCATT CAACGACGCC AGGGACACCT ACTTTGCGCG CGCGCTTCCG
ATCGTCGACA AGGAGATCGC GGCCGGATTG AGCGACCTCA ACTATGCGCT CACGGCGGAT
AAGCTGGCCG ACACGGTGGT GCCTGCGGTG CAGAAATTCT ACTTAGTACG AGATTCGGCC
ATCGCCGAGG CGCGCAACCG TGCGATCGCC GCGCGTGACC AAGCCTATCT GATGCTATCG
CTGGCGACGG TCGTCGTCGT GGCCTTGTTC GGCATTCTCG TGTTCGTCAC CATGCTGCTG
CGCCGCCGCG TCATCAACCC GATCGTGCAC CTGACCGGCC TGATCGGCCA GATGGCGGCC
GGCAATGACG ACGTGGCGAT CCCGACCTGC GACCGCGACG ACGAGATCGC CGCGATGACC
GGCTCGCTGC AGACCTTCAA GGAAGCGCTG TTGGAGAAGA AGCGTGCAGA GCAGGCGGCT
GCGGCGGACG CGCAGTCTAA GATCGAGCGG GGCCAGCGGG TGGAGAGGTT CACGCGCGAT
TTTGAGATGG TGATTGGCGA GGTCGTTGGC GTCGTTTCAT CCGCGTCGGG CGATCTCGAG
CGCTCCGCCG CATCCCTGAC GACGACGGCG GCCCGCTCGC TGGAGCTCGC CACCGTGGTG
ACATCGGCGT CCGAGGAAGC TTCGACCAAC GTGCATTCGG TCGCCGCGGC GGCAGAGGAG
ATGAGCTCGT CGGTCAACGA GATAAGCCGT CAGGTGCAGG ACTCCGCGCG CATCGCCAGC
GAGGCGCTGG CGCAGGCCCG CAAGACCAAC GACAATGTCG CCGAGCTCGC AAAGGCGGCG
GCGCGGATCG GCGACGTCGT CGAGCTGATC AATGCGATCG CGGGGCAAAC CAATCTGCTC
GCGCTTAACG CCACCATCGA GGCCGCCCGC GCCGGCGAGG CCGGCCGCGG CTTCGCGGTG
GTCGCCTCGG AGGTCAAGGC GCTGGCCGAG CAGACCGCTA AGGCGACCGG AGAGATTGGC
CAGCAGATCG GCGGCATCCA GGCTGCGACC AATGAATCGG TTGGTTCGAT CAAGGACATC
GGCGAGACCA TCGCCCGGAT GTCGGAGATC GCCTCCGCCA TCGCCTCTGC CGTCGAGGAG
CAGAGCTCGG CCACGCGCGA AATCTCGAGC AACGTCCAGC AGGCCGCCCA CGGCACCCAA
CAGGTCTCGG CGAACATTGC CAGTGTCCGG CAGGGCGCCG ACGAGACCGG CTCGGCCTCC
TCACAGGTAC TGGCGGCCGC GAAGGCCCTG TCCGGCCAGA GCAGCCGCCT CCGCGACGAG
GTCAGCCGCT TCCTGAATTC CGTTCGCGCG GCGTGA
 
Protein sequence
MKIGRLFAIS MLSVTALAIL PAAQVVIEQV RAVNDKADAI KTVEAFGAVL LFAQEVVSHR 
APYIGPLFQE PVATPAQLEA VRKIKQSSEA AFAKARAQVA NVSETEAIRR SLEQAAAKLA
DLQTLVEPSL SAPLSGRDQA AIKSFLPGIA QTAVAIEPIL NRLQNHVANA DASLTTLLDV
ARTAQDLRVT AGGRAASLSP ALNTRRALTA AEKAAMDRAQ GRTEIDRDRL EASIDQIGNP
ERLLAAFNDA RDTYFARALP IVDKEIAAGL SDLNYALTAD KLADTVVPAV QKFYLVRDSA
IAEARNRAIA ARDQAYLMLS LATVVVVALF GILVFVTMLL RRRVINPIVH LTGLIGQMAA
GNDDVAIPTC DRDDEIAAMT GSLQTFKEAL LEKKRAEQAA AADAQSKIER GQRVERFTRD
FEMVIGEVVG VVSSASGDLE RSAASLTTTA ARSLELATVV TSASEEASTN VHSVAAAAEE
MSSSVNEISR QVQDSARIAS EALAQARKTN DNVAELAKAA ARIGDVVELI NAIAGQTNLL
ALNATIEAAR AGEAGRGFAV VASEVKALAE QTAKATGEIG QQIGGIQAAT NESVGSIKDI
GETIARMSEI ASAIASAVEE QSSATREISS NVQQAAHGTQ QVSANIASVR QGADETGSAS
SQVLAAAKAL SGQSSRLRDE VSRFLNSVRA A