More than 300 homologs were found in PanDaTox collection
for query gene RPC_4104 on replicon NC_007925
Organism: Rhodopseudomonas palustris BisB18



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_007958  RPD_3904  chemotaxis sensory transducer  72.19 
 
 
566 aa  791    Rhodopseudomonas palustris BisB5  Bacteria  normal  normal 
 
 
-
 
NC_009485  BBta_1840  methyl-accepting chemotaxis sensory transducer  69.41 
 
 
561 aa  771    Bradyrhizobium sp. BTAi1  Bacteria  normal  normal  0.745103 
 
 
-
 
NC_007778  RPB_1316  methyl-accepting chemotaxis sensory transducer  73.44 
 
 
561 aa  785    Rhodopseudomonas palustris HaA2  Bacteria  normal  normal  0.234166 
 
 
-
 
NC_007778  RPB_1317  methyl-accepting chemotaxis sensory transducer  70.77 
 
 
560 aa  724    Rhodopseudomonas palustris HaA2  Bacteria  normal  normal  0.14669 
 
 
-
 
NC_011004  Rpal_4787  methyl-accepting chemotaxis sensory transducer  70.94 
 
 
561 aa  756    Rhodopseudomonas palustris TIE-1  Bacteria  normal  0.708956  n/a   
 
 
-
 
NC_011004  Rpal_4788  methyl-accepting chemotaxis sensory transducer  72.55 
 
 
561 aa  750    Rhodopseudomonas palustris TIE-1  Bacteria  normal  n/a   
 
 
-
 
NC_007925  RPC_4104  methyl-accepting chemotaxis sensory transducer  100 
 
 
586 aa  1165    Rhodopseudomonas palustris BisB18  Bacteria  normal  0.783692  normal 
 
 
-
 
NC_007925  RPC_4105  methyl-accepting chemotaxis sensory transducer  78.79 
 
 
561 aa  791    Rhodopseudomonas palustris BisB18  Bacteria  normal  0.916882  normal 
 
 
-
 
NC_007925  RPC_2846  methyl-accepting chemotaxis sensory transducer  41.64 
 
 
565 aa  382  1e-105  Rhodopseudomonas palustris BisB18  Bacteria  normal  0.430745  normal 
 
 
-
 
NC_007925  RPC_3380  methyl-accepting chemotaxis sensory transducer  43.46 
 
 
567 aa  380  1e-104  Rhodopseudomonas palustris BisB18  Bacteria  normal  normal  0.689596 
 
 
-
 
NC_007778  RPB_4280  methyl-accepting chemotaxis sensory transducer  45.73 
 
 
563 aa  374  1e-102  Rhodopseudomonas palustris HaA2  Bacteria  normal  normal 
 
 
-
 
NC_009485  BBta_4464  methyl-accepting chemotaxis sensory transducer  45.38 
 
 
573 aa  374  1e-102  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.610641  normal  0.757777 
 
 
-
 
NC_007925  RPC_1253  methyl-accepting chemotaxis sensory transducer  44.7 
 
 
567 aa  361  2e-98  Rhodopseudomonas palustris BisB18  Bacteria  normal  normal  0.010155 
 
 
-
 
NC_007643  Rru_A0158  methyl-accepting chemotaxis sensory transducer  39.36 
 
 
561 aa  351  2e-95  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  n/a   
 
 
-
 
NC_010511  M446_2738  methyl-accepting chemotaxis sensory transducer  42.83 
 
 
562 aa  342  8e-93  Methylobacterium sp. 4-46  Bacteria  normal  0.809654  normal  0.020868 
 
 
-
 
NC_011004  Rpal_4941  methyl-accepting chemotaxis sensory transducer  42.45 
 
 
563 aa  341  2e-92  Rhodopseudomonas palustris TIE-1  Bacteria  normal  0.396774  n/a   
 
 
-
 
NC_010172  Mext_0820  chemotaxis sensory transducer  42.78 
 
 
608 aa  332  2e-89  Methylobacterium extorquens PA1  Bacteria  normal  0.254614  normal  0.216431 
 
 
-
 
NC_007958  RPD_1918  chemotaxis sensory transducer  50.39 
 
 
688 aa  328  1.0000000000000001e-88  Rhodopseudomonas palustris BisB5  Bacteria  normal  normal  0.537222 
 
 
-
 
NC_007958  RPD_0065  chemotaxis sensory transducer  50.9 
 
 
688 aa  327  4.0000000000000003e-88  Rhodopseudomonas palustris BisB5  Bacteria  normal  normal  0.0714339 
 
 
-
 
NC_009485  BBta_6635  methyl-accepting chemotaxis protein  51.61 
 
 
565 aa  325  2e-87  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.459746  normal  0.104137 
 
 
-
 
NC_007958  RPD_3547  chemotaxis sensory transducer  50.51 
 
 
566 aa  324  3e-87  Rhodopseudomonas palustris BisB5  Bacteria  normal  normal 
 
 
-
 
NC_009485  BBta_0969  methyl-accepting chemotaxis sensory transducer  50.53 
 
 
562 aa  324  3e-87  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.956339  normal  0.570918 
 
 
-
 
NC_010725  Mpop_0741  methyl-accepting chemotaxis sensory transducer  43.88 
 
 
558 aa  324  3e-87  Methylobacterium populi BJ001  Bacteria  normal  0.532986  normal 
 
 
-
 
NC_010172  Mext_3147  chemotaxis sensory transducer  52.83 
 
 
561 aa  323  5e-87  Methylobacterium extorquens PA1  Bacteria  normal  0.0908078  normal 
 
 
-
 
NC_011757  Mchl_3471  methyl-accepting chemotaxis sensory transducer  53.1 
 
 
561 aa  322  9.000000000000001e-87  Methylobacterium chloromethanicum CM4  Bacteria  normal  0.130295  normal 
 
 
-
 
NC_009485  BBta_6483  methyl-accepting chemotaxis protein  50 
 
 
565 aa  320  3.9999999999999996e-86  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.877741  normal 
 
 
-
 
NC_011757  Mchl_0779  methyl-accepting chemotaxis sensory transducer with Cache sensor  42.38 
 
 
558 aa  320  3.9999999999999996e-86  Methylobacterium chloromethanicum CM4  Bacteria  normal  0.0546434  normal  0.151916 
 
 
-
 
NC_007643  Rru_A1160  chemotaxis sensory transducer  40.89 
 
 
559 aa  319  9e-86  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  n/a   
 
 
-
 
NC_009485  BBta_0644  putative methyl-accepting chemotaxis receptor/sensory transducer  38.14 
 
 
565 aa  318  2e-85  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal 
 
 
-
 
NC_010505  Mrad2831_0957  methyl-accepting chemotaxis sensory transducer  40.75 
 
 
549 aa  316  6e-85  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal  0.482626 
 
 
-
 
NC_007925  RPC_4407  methyl-accepting chemotaxis sensory transducer  49.22 
 
 
566 aa  315  9.999999999999999e-85  Rhodopseudomonas palustris BisB18  Bacteria  normal  normal  0.365939 
 
 
-
 
NC_007643  Rru_A2366  methyl-accepting chemotaxis sensory transducer  38.81 
 
 
560 aa  314  3.9999999999999997e-84  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  0.196109  n/a   
 
 
-
 
NC_010505  Mrad2831_1766  methyl-accepting chemotaxis sensory transducer  41.53 
 
 
575 aa  313  3.9999999999999997e-84  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal 
 
 
-
 
NC_007925  RPC_4406  methyl-accepting chemotaxis sensory transducer  50.4 
 
 
566 aa  313  4.999999999999999e-84  Rhodopseudomonas palustris BisB18  Bacteria  normal  normal  0.341232 
 
 
-
 
NC_010725  Mpop_1048  methyl-accepting chemotaxis sensory transducer  39.02 
 
 
559 aa  313  7.999999999999999e-84  Methylobacterium populi BJ001  Bacteria  normal  normal  0.165383 
 
 
-
 
NC_007958  RPD_0994  chemotaxis sensory transducer  51.34 
 
 
656 aa  313  7.999999999999999e-84  Rhodopseudomonas palustris BisB5  Bacteria  normal  0.357708  normal 
 
 
-
 
NC_011004  Rpal_2025  methyl-accepting chemotaxis sensory transducer  49.6 
 
 
688 aa  312  1e-83  Rhodopseudomonas palustris TIE-1  Bacteria  normal  0.0110809  n/a   
 
 
-
 
NC_011004  Rpal_3598  methyl-accepting chemotaxis sensory transducer  50.39 
 
 
672 aa  311  2e-83  Rhodopseudomonas palustris TIE-1  Bacteria  normal  n/a   
 
 
-
 
NC_007778  RPB_0192  methyl-accepting chemotaxis sensory transducer  49.87 
 
 
688 aa  310  2.9999999999999997e-83  Rhodopseudomonas palustris HaA2  Bacteria  normal  normal 
 
 
-
 
NC_007778  RPB_3545  methyl-accepting chemotaxis sensory transducer  51.89 
 
 
689 aa  310  2.9999999999999997e-83  Rhodopseudomonas palustris HaA2  Bacteria  normal  0.457552  normal  0.598514 
 
 
-
 
NC_011004  Rpal_4118  methyl-accepting chemotaxis sensory transducer  49.87 
 
 
567 aa  310  5e-83  Rhodopseudomonas palustris TIE-1  Bacteria  normal  n/a   
 
 
-
 
NC_007778  RPB_4561  methyl-accepting chemotaxis sensory transducer  51.08 
 
 
711 aa  310  6.999999999999999e-83  Rhodopseudomonas palustris HaA2  Bacteria  normal  normal 
 
 
-
 
NC_007925  RPC_2744  methyl-accepting chemotaxis sensory transducer  48.95 
 
 
572 aa  310  6.999999999999999e-83  Rhodopseudomonas palustris BisB18  Bacteria  normal  0.696609  normal  0.585687 
 
 
-
 
NC_007958  RPD_0840  chemotaxis sensory transducer  51.21 
 
 
712 aa  308  1.0000000000000001e-82  Rhodopseudomonas palustris BisB5  Bacteria  normal  normal  0.174635 
 
 
-
 
NC_009485  BBta_0330  putative methyl-accepting chemotaxis receptor/sensory transducer  51.22 
 
 
676 aa  308  2.0000000000000002e-82  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal  0.0869057 
 
 
-
 
NC_007958  RPD_0995  chemotaxis sensory transducer  51.21 
 
 
656 aa  308  2.0000000000000002e-82  Rhodopseudomonas palustris BisB5  Bacteria  normal  0.880627  normal 
 
 
-
 
NC_011004  Rpal_4271  methyl-accepting chemotaxis sensory transducer  49.33 
 
 
567 aa  307  3e-82  Rhodopseudomonas palustris TIE-1  Bacteria  normal  n/a   
 
 
-
 
NC_010725  Mpop_1216  methyl-accepting chemotaxis sensory transducer  52.01 
 
 
562 aa  306  6e-82  Methylobacterium populi BJ001  Bacteria  normal  0.743011  normal  0.567814 
 
 
-
 
NC_007925  RPC_2149  methyl-accepting chemotaxis sensory transducer  52.27 
 
 
675 aa  306  1.0000000000000001e-81  Rhodopseudomonas palustris BisB18  Bacteria  normal  normal  0.0391093 
 
 
-
 
NC_007643  Rru_A0632  chemotaxis sensory transducer  38.01 
 
 
736 aa  304  2.0000000000000002e-81  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  0.180969  n/a   
 
 
-
 
NC_007778  RPB_2358  methyl-accepting chemotaxis sensory transducer  51.06 
 
 
673 aa  304  2.0000000000000002e-81  Rhodopseudomonas palustris HaA2  Bacteria  normal  normal  0.207811 
 
 
-
 
NC_010725  Mpop_3344  methyl-accepting chemotaxis sensory transducer  53.52 
 
 
561 aa  303  5.000000000000001e-81  Methylobacterium populi BJ001  Bacteria  normal  0.828703  normal 
 
 
-
 
NC_007958  RPD_3107  chemotaxis sensory transducer  49.73 
 
 
674 aa  303  5.000000000000001e-81  Rhodopseudomonas palustris BisB5  Bacteria  normal  normal  0.0664997 
 
 
-
 
NC_009485  BBta_2905  putative methyl-accepting chemotaxis protein  51.92 
 
 
542 aa  303  7.000000000000001e-81  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.234112  normal  0.211145 
 
 
-
 
NC_011757  Mchl_1427  methyl-accepting chemotaxis sensory transducer  51.74 
 
 
562 aa  302  9e-81  Methylobacterium chloromethanicum CM4  Bacteria  normal  0.309452  normal 
 
 
-
 
NC_010172  Mext_1266  chemotaxis sensory transducer  51.47 
 
 
562 aa  302  1e-80  Methylobacterium extorquens PA1  Bacteria  normal  normal 
 
 
-
 
NC_009485  BBta_2901  methyl-accepting chemotaxis sensory transducer  52.86 
 
 
674 aa  301  2e-80  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.14772  normal  0.22504 
 
 
-
 
NC_007643  Rru_A1584  chemotaxis sensory transducer  38.11 
 
 
556 aa  301  2e-80  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  0.596272  n/a   
 
 
-
 
NC_007778  RPB_2250  methyl-accepting chemotaxis sensory transducer  50 
 
 
670 aa  301  2e-80  Rhodopseudomonas palustris HaA2  Bacteria  normal  normal 
 
 
-
 
NC_010172  Mext_2072  chemotaxis sensory transducer  50.67 
 
 
556 aa  301  2e-80  Methylobacterium extorquens PA1  Bacteria  normal  0.68132  normal  0.341201 
 
 
-
 
NC_011757  Mchl_2346  methyl-accepting chemotaxis sensory transducer  50.67 
 
 
556 aa  301  3e-80  Methylobacterium chloromethanicum CM4  Bacteria  normal  normal  0.395485 
 
 
-
 
NC_007925  RPC_3804  methyl-accepting chemotaxis sensory transducer  51.77 
 
 
655 aa  300  4e-80  Rhodopseudomonas palustris BisB18  Bacteria  normal  0.772812  normal 
 
 
-
 
NC_010505  Mrad2831_1828  methyl-accepting chemotaxis sensory transducer  40.77 
 
 
579 aa  300  6e-80  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal  0.0132835 
 
 
-
 
NC_010517  Mrad2831_6434  methyl-accepting chemotaxis sensory transducer  52.78 
 
 
557 aa  299  8e-80  Methylobacterium radiotolerans JCM 2831  Bacteria  n/a    normal 
 
 
-
 
NC_009485  BBta_7508  putative methyl-accepting chemotaxis protein (with a HAMP region)  52.27 
 
 
552 aa  298  1e-79  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.692825  normal 
 
 
-
 
NC_011004  Rpal_5172  methyl-accepting chemotaxis sensory transducer  50.81 
 
 
656 aa  298  2e-79  Rhodopseudomonas palustris TIE-1  Bacteria  normal  n/a   
 
 
-
 
NC_007925  RPC_1795  methyl-accepting chemotaxis sensory transducer  49.74 
 
 
561 aa  298  2e-79  Rhodopseudomonas palustris BisB18  Bacteria  normal  0.432423  normal  0.0230577 
 
 
-
 
NC_009485  BBta_2904  putative methyl-accepting chemotaxis protein  51.37 
 
 
568 aa  295  1e-78  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.481458  normal  0.283558 
 
 
-
 
NC_007643  Rru_A1293  methyl-accepting chemotaxis sensory transducer  48.84 
 
 
562 aa  295  1e-78  Rhodospirillum rubrum ATCC 11170  Bacteria  decreased coverage  0.00511002  n/a   
 
 
-
 
NC_009485  BBta_1388  methyl-accepting chemotaxis sensory transducer  48 
 
 
656 aa  296  1e-78  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.0527529  normal  0.207734 
 
 
-
 
NC_007778  RPB_0914  methyl-accepting chemotaxis sensory transducer  49.3 
 
 
689 aa  294  2e-78  Rhodopseudomonas palustris HaA2  Bacteria  normal  normal  0.497103 
 
 
-
 
NC_007925  RPC_4147  methyl-accepting chemotaxis sensory transducer  49.35 
 
 
694 aa  295  2e-78  Rhodopseudomonas palustris BisB18  Bacteria  normal  normal 
 
 
-
 
NC_007643  Rru_A2484  chemotaxis sensory transducer  48.45 
 
 
563 aa  294  3e-78  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  0.1562  n/a   
 
 
-
 
NC_007643  Rru_A1583  chemotaxis sensory transducer  35.7 
 
 
583 aa  293  4e-78  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  0.105257  n/a   
 
 
-
 
NC_010172  Mext_0191  chemotaxis sensory transducer  53.16 
 
 
565 aa  293  5e-78  Methylobacterium extorquens PA1  Bacteria  normal  normal  0.731843 
 
 
-
 
NC_009485  BBta_0575  methyl-accepting chemotaxis sensory transducer  50 
 
 
681 aa  293  8e-78  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal 
 
 
-
 
NC_010511  M446_2091  methyl-accepting chemotaxis sensory transducer  51.46 
 
 
562 aa  293  8e-78  Methylobacterium sp. 4-46  Bacteria  normal  normal  0.0245477 
 
 
-
 
NC_011757  Mchl_3907  methyl-accepting chemotaxis sensory transducer  50.93 
 
 
565 aa  292  9e-78  Methylobacterium chloromethanicum CM4  Bacteria  normal  normal 
 
 
-
 
NC_011004  Rpal_0924  methyl-accepting chemotaxis sensory transducer  50.13 
 
 
712 aa  291  3e-77  Rhodopseudomonas palustris TIE-1  Bacteria  normal  0.991242  n/a   
 
 
-
 
NC_007958  RPD_0153  chemotaxis sensory transducer  51.74 
 
 
602 aa  291  3e-77  Rhodopseudomonas palustris BisB5  Bacteria  normal  normal 
 
 
-
 
NC_011004  Rpal_5119  methyl-accepting chemotaxis sensory transducer  48.52 
 
 
563 aa  290  4e-77  Rhodopseudomonas palustris TIE-1  Bacteria  normal  n/a   
 
 
-
 
NC_011757  Mchl_0134  methyl-accepting chemotaxis sensory transducer  52.87 
 
 
565 aa  290  5.0000000000000004e-77  Methylobacterium chloromethanicum CM4  Bacteria  normal  normal  0.150747 
 
 
-
 
NC_007925  RPC_1843  methyl-accepting chemotaxis sensory transducer  49.71 
 
 
568 aa  290  6e-77  Rhodopseudomonas palustris BisB18  Bacteria  normal  normal  0.618754 
 
 
-
 
NC_007925  RPC_3476  methyl-accepting chemotaxis sensory transducer  53.5 
 
 
641 aa  290  6e-77  Rhodopseudomonas palustris BisB18  Bacteria  normal  0.640734  normal 
 
 
-
 
NC_009485  BBta_4269  putative methyl-accepting chemotaxis receptor/sensory transducer protein  50.28 
 
 
691 aa  288  1e-76  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal  0.35374 
 
 
-
 
NC_010725  Mpop_0223  methyl-accepting chemotaxis sensory transducer  52.35 
 
 
565 aa  288  1e-76  Methylobacterium populi BJ001  Bacteria  normal  normal 
 
 
-
 
NC_009485  BBta_7375  methyl-accepting chemotaxis sensory transducer  48.91 
 
 
655 aa  288  2e-76  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal 
 
 
-
 
NC_007643  Rru_A2460  chemotaxis sensory transducer  37.37 
 
 
565 aa  288  2e-76  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  n/a   
 
 
-
 
NC_007925  RPC_2742  methyl-accepting chemotaxis sensory transducer  50 
 
 
560 aa  288  2e-76  Rhodopseudomonas palustris BisB18  Bacteria  normal  normal  0.429688 
 
 
-
 
NC_007958  RPD_2465  chemotaxis sensory transducer  47.41 
 
 
561 aa  288  2e-76  Rhodopseudomonas palustris BisB5  Bacteria  normal  0.5909  normal  0.697276 
 
 
-
 
NC_007958  RPD_1025  methyl-accepting chemotaxis sensory transducer  49.3 
 
 
681 aa  287  2.9999999999999996e-76  Rhodopseudomonas palustris BisB5  Bacteria  normal  normal 
 
 
-
 
NC_009485  BBta_2903  methyl-accepting chemotaxis sensory transducer  51.21 
 
 
568 aa  286  5e-76  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.335645  normal  0.0996392 
 
 
-
 
NC_007778  RPB_2961  methyl-accepting chemotaxis sensory transducer  51.34 
 
 
563 aa  287  5e-76  Rhodopseudomonas palustris HaA2  Bacteria  normal  normal 
 
 
-
 
NC_010725  Mpop_5403  methyl-accepting chemotaxis sensory transducer  49.61 
 
 
538 aa  286  7e-76  Methylobacterium populi BJ001  Bacteria  normal  normal 
 
 
-
 
NC_011004  Rpal_2757  methyl-accepting chemotaxis sensory transducer  47.04 
 
 
561 aa  285  1.0000000000000001e-75  Rhodopseudomonas palustris TIE-1  Bacteria  normal  0.0630329  n/a   
 
 
-
 
NC_010725  Mpop_0581  methyl-accepting chemotaxis sensory transducer  49.34 
 
 
562 aa  284  2.0000000000000002e-75  Methylobacterium populi BJ001  Bacteria  normal  0.0281709  decreased coverage  0.00474558 
 
 
-
 
NC_007925  RPC_3379  methyl-accepting chemotaxis sensory transducer  47.49 
 
 
587 aa  284  3.0000000000000004e-75  Rhodopseudomonas palustris BisB18  Bacteria  normal  0.787169  normal 
 
 
-
 
NC_007778  RPB_2983  methyl-accepting chemotaxis sensory transducer  43.71 
 
 
561 aa  284  4.0000000000000003e-75  Rhodopseudomonas palustris HaA2  Bacteria  normal  normal  0.0323515 
 
 
-
 
NC_011004  Rpal_1871  methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor  47.2 
 
 
716 aa  284  4.0000000000000003e-75  Rhodopseudomonas palustris TIE-1  Bacteria  normal  n/a   
 
 
-
 
NC_007958  RPD_0497  chemotaxis sensory transducer  50.53 
 
 
577 aa  283  7.000000000000001e-75  Rhodopseudomonas palustris BisB5  Bacteria  normal  normal 
 
 
-
 
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