More than 300 homologs were found in PanDaTox collection
for query gene RPB_1316 on replicon NC_007778
Organism: Rhodopseudomonas palustris HaA2



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_011004  Rpal_4787  methyl-accepting chemotaxis sensory transducer  72.91 
 
 
561 aa  784    Rhodopseudomonas palustris TIE-1  Bacteria  normal  0.708956  n/a   
 
 
-
 
NC_009485  BBta_1840  methyl-accepting chemotaxis sensory transducer  63.99 
 
 
561 aa  705    Bradyrhizobium sp. BTAi1  Bacteria  normal  normal  0.745103 
 
 
-
 
NC_007958  RPD_3904  chemotaxis sensory transducer  68.81 
 
 
566 aa  768    Rhodopseudomonas palustris BisB5  Bacteria  normal  normal 
 
 
-
 
NC_007778  RPB_1316  methyl-accepting chemotaxis sensory transducer  100 
 
 
561 aa  1119    Rhodopseudomonas palustris HaA2  Bacteria  normal  normal  0.234166 
 
 
-
 
NC_007778  RPB_1317  methyl-accepting chemotaxis sensory transducer  73.26 
 
 
560 aa  773    Rhodopseudomonas palustris HaA2  Bacteria  normal  normal  0.14669 
 
 
-
 
NC_007925  RPC_4104  methyl-accepting chemotaxis sensory transducer  73.44 
 
 
586 aa  804    Rhodopseudomonas palustris BisB18  Bacteria  normal  0.783692  normal 
 
 
-
 
NC_007925  RPC_4105  methyl-accepting chemotaxis sensory transducer  70.77 
 
 
561 aa  707    Rhodopseudomonas palustris BisB18  Bacteria  normal  0.916882  normal 
 
 
-
 
NC_011004  Rpal_4788  methyl-accepting chemotaxis sensory transducer  73.44 
 
 
561 aa  765    Rhodopseudomonas palustris TIE-1  Bacteria  normal  n/a   
 
 
-
 
NC_009485  BBta_4464  methyl-accepting chemotaxis sensory transducer  43.87 
 
 
573 aa  370  1e-101  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.610641  normal  0.757777 
 
 
-
 
NC_007925  RPC_3380  methyl-accepting chemotaxis sensory transducer  41.88 
 
 
567 aa  370  1e-101  Rhodopseudomonas palustris BisB18  Bacteria  normal  normal  0.689596 
 
 
-
 
NC_007643  Rru_A0158  methyl-accepting chemotaxis sensory transducer  41.55 
 
 
561 aa  366  1e-100  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  n/a   
 
 
-
 
NC_007925  RPC_2846  methyl-accepting chemotaxis sensory transducer  41.2 
 
 
565 aa  357  3.9999999999999996e-97  Rhodopseudomonas palustris BisB18  Bacteria  normal  0.430745  normal 
 
 
-
 
NC_007778  RPB_4280  methyl-accepting chemotaxis sensory transducer  44.22 
 
 
563 aa  356  6.999999999999999e-97  Rhodopseudomonas palustris HaA2  Bacteria  normal  normal 
 
 
-
 
NC_007925  RPC_1253  methyl-accepting chemotaxis sensory transducer  43.69 
 
 
567 aa  353  4e-96  Rhodopseudomonas palustris BisB18  Bacteria  normal  normal  0.010155 
 
 
-
 
NC_010511  M446_2738  methyl-accepting chemotaxis sensory transducer  41.93 
 
 
562 aa  334  2e-90  Methylobacterium sp. 4-46  Bacteria  normal  0.809654  normal  0.020868 
 
 
-
 
NC_011004  Rpal_4941  methyl-accepting chemotaxis sensory transducer  41.81 
 
 
563 aa  332  8e-90  Rhodopseudomonas palustris TIE-1  Bacteria  normal  0.396774  n/a   
 
 
-
 
NC_007958  RPD_0065  chemotaxis sensory transducer  48.33 
 
 
688 aa  325  1e-87  Rhodopseudomonas palustris BisB5  Bacteria  normal  normal  0.0714339 
 
 
-
 
NC_009485  BBta_0644  putative methyl-accepting chemotaxis receptor/sensory transducer  38.98 
 
 
565 aa  320  5e-86  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal 
 
 
-
 
NC_010505  Mrad2831_0957  methyl-accepting chemotaxis sensory transducer  40.57 
 
 
549 aa  320  6e-86  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal  0.482626 
 
 
-
 
NC_007958  RPD_1918  chemotaxis sensory transducer  49.72 
 
 
688 aa  320  6e-86  Rhodopseudomonas palustris BisB5  Bacteria  normal  normal  0.537222 
 
 
-
 
NC_007958  RPD_3547  chemotaxis sensory transducer  48.84 
 
 
566 aa  318  1e-85  Rhodopseudomonas palustris BisB5  Bacteria  normal  normal 
 
 
-
 
NC_007778  RPB_0192  methyl-accepting chemotaxis sensory transducer  48.81 
 
 
688 aa  318  2e-85  Rhodopseudomonas palustris HaA2  Bacteria  normal  normal 
 
 
-
 
NC_011004  Rpal_4118  methyl-accepting chemotaxis sensory transducer  49.47 
 
 
567 aa  317  3e-85  Rhodopseudomonas palustris TIE-1  Bacteria  normal  n/a   
 
 
-
 
NC_010172  Mext_0820  chemotaxis sensory transducer  39.79 
 
 
608 aa  317  5e-85  Methylobacterium extorquens PA1  Bacteria  normal  0.254614  normal  0.216431 
 
 
-
 
NC_010505  Mrad2831_1766  methyl-accepting chemotaxis sensory transducer  40.25 
 
 
575 aa  315  9.999999999999999e-85  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal 
 
 
-
 
NC_011004  Rpal_2025  methyl-accepting chemotaxis sensory transducer  47.33 
 
 
688 aa  313  4.999999999999999e-84  Rhodopseudomonas palustris TIE-1  Bacteria  normal  0.0110809  n/a   
 
 
-
 
NC_009485  BBta_0969  methyl-accepting chemotaxis sensory transducer  46.08 
 
 
562 aa  313  5.999999999999999e-84  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.956339  normal  0.570918 
 
 
-
 
NC_007925  RPC_4407  methyl-accepting chemotaxis sensory transducer  47.26 
 
 
566 aa  313  6.999999999999999e-84  Rhodopseudomonas palustris BisB18  Bacteria  normal  normal  0.365939 
 
 
-
 
NC_007925  RPC_2149  methyl-accepting chemotaxis sensory transducer  50.13 
 
 
675 aa  310  2.9999999999999997e-83  Rhodopseudomonas palustris BisB18  Bacteria  normal  normal  0.0391093 
 
 
-
 
NC_007778  RPB_3545  methyl-accepting chemotaxis sensory transducer  49.58 
 
 
689 aa  310  4e-83  Rhodopseudomonas palustris HaA2  Bacteria  normal  0.457552  normal  0.598514 
 
 
-
 
NC_007925  RPC_4406  methyl-accepting chemotaxis sensory transducer  47.73 
 
 
566 aa  310  5e-83  Rhodopseudomonas palustris BisB18  Bacteria  normal  normal  0.341232 
 
 
-
 
NC_007958  RPD_0840  chemotaxis sensory transducer  50.8 
 
 
712 aa  310  5.9999999999999995e-83  Rhodopseudomonas palustris BisB5  Bacteria  normal  normal  0.174635 
 
 
-
 
NC_009485  BBta_6635  methyl-accepting chemotaxis protein  47.49 
 
 
565 aa  306  4.0000000000000004e-82  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.459746  normal  0.104137 
 
 
-
 
NC_007643  Rru_A1293  methyl-accepting chemotaxis sensory transducer  49.48 
 
 
562 aa  306  6e-82  Rhodospirillum rubrum ATCC 11170  Bacteria  decreased coverage  0.00511002  n/a   
 
 
-
 
NC_007778  RPB_4561  methyl-accepting chemotaxis sensory transducer  49.73 
 
 
711 aa  306  6e-82  Rhodopseudomonas palustris HaA2  Bacteria  normal  normal 
 
 
-
 
NC_009485  BBta_1388  methyl-accepting chemotaxis sensory transducer  48.81 
 
 
656 aa  306  8.000000000000001e-82  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.0527529  normal  0.207734 
 
 
-
 
NC_009485  BBta_0330  putative methyl-accepting chemotaxis receptor/sensory transducer  48.54 
 
 
676 aa  305  1.0000000000000001e-81  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal  0.0869057 
 
 
-
 
NC_007643  Rru_A1160  chemotaxis sensory transducer  37.91 
 
 
559 aa  305  1.0000000000000001e-81  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  n/a   
 
 
-
 
NC_011004  Rpal_3598  methyl-accepting chemotaxis sensory transducer  49.48 
 
 
672 aa  305  2.0000000000000002e-81  Rhodopseudomonas palustris TIE-1  Bacteria  normal  n/a   
 
 
-
 
NC_007958  RPD_0994  chemotaxis sensory transducer  49.07 
 
 
656 aa  304  2.0000000000000002e-81  Rhodopseudomonas palustris BisB5  Bacteria  normal  0.357708  normal 
 
 
-
 
NC_007958  RPD_0995  chemotaxis sensory transducer  49.34 
 
 
656 aa  303  5.000000000000001e-81  Rhodopseudomonas palustris BisB5  Bacteria  normal  0.880627  normal 
 
 
-
 
NC_011757  Mchl_0779  methyl-accepting chemotaxis sensory transducer with Cache sensor  39.61 
 
 
558 aa  303  6.000000000000001e-81  Methylobacterium chloromethanicum CM4  Bacteria  normal  0.0546434  normal  0.151916 
 
 
-
 
NC_007925  RPC_2744  methyl-accepting chemotaxis sensory transducer  46.56 
 
 
572 aa  303  6.000000000000001e-81  Rhodopseudomonas palustris BisB18  Bacteria  normal  0.696609  normal  0.585687 
 
 
-
 
NC_009485  BBta_6483  methyl-accepting chemotaxis protein  47.73 
 
 
565 aa  303  7.000000000000001e-81  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.877741  normal 
 
 
-
 
NC_007643  Rru_A2484  chemotaxis sensory transducer  47.55 
 
 
563 aa  303  7.000000000000001e-81  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  0.1562  n/a   
 
 
-
 
NC_010172  Mext_3147  chemotaxis sensory transducer  51 
 
 
561 aa  301  2e-80  Methylobacterium extorquens PA1  Bacteria  normal  0.0908078  normal 
 
 
-
 
NC_011757  Mchl_3471  methyl-accepting chemotaxis sensory transducer  50.72 
 
 
561 aa  300  4e-80  Methylobacterium chloromethanicum CM4  Bacteria  normal  0.130295  normal 
 
 
-
 
NC_007778  RPB_2358  methyl-accepting chemotaxis sensory transducer  49.07 
 
 
673 aa  300  5e-80  Rhodopseudomonas palustris HaA2  Bacteria  normal  normal  0.207811 
 
 
-
 
NC_011757  Mchl_2346  methyl-accepting chemotaxis sensory transducer  48.4 
 
 
556 aa  299  8e-80  Methylobacterium chloromethanicum CM4  Bacteria  normal  normal  0.395485 
 
 
-
 
NC_010172  Mext_2072  chemotaxis sensory transducer  48.4 
 
 
556 aa  299  9e-80  Methylobacterium extorquens PA1  Bacteria  normal  0.68132  normal  0.341201 
 
 
-
 
NC_010725  Mpop_0741  methyl-accepting chemotaxis sensory transducer  40.67 
 
 
558 aa  299  9e-80  Methylobacterium populi BJ001  Bacteria  normal  0.532986  normal 
 
 
-
 
NC_009485  BBta_7375  methyl-accepting chemotaxis sensory transducer  49.33 
 
 
655 aa  299  1e-79  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal 
 
 
-
 
NC_007643  Rru_A1584  chemotaxis sensory transducer  36.83 
 
 
556 aa  298  2e-79  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  0.596272  n/a   
 
 
-
 
NC_007643  Rru_A1583  chemotaxis sensory transducer  36.72 
 
 
583 aa  298  3e-79  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  0.105257  n/a   
 
 
-
 
NC_009485  BBta_2905  putative methyl-accepting chemotaxis protein  48.49 
 
 
542 aa  297  4e-79  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.234112  normal  0.211145 
 
 
-
 
NC_007925  RPC_3804  methyl-accepting chemotaxis sensory transducer  49.47 
 
 
655 aa  297  4e-79  Rhodopseudomonas palustris BisB18  Bacteria  normal  0.772812  normal 
 
 
-
 
NC_007778  RPB_0914  methyl-accepting chemotaxis sensory transducer  46.91 
 
 
689 aa  296  7e-79  Rhodopseudomonas palustris HaA2  Bacteria  normal  normal  0.497103 
 
 
-
 
NC_007643  Rru_A2366  methyl-accepting chemotaxis sensory transducer  36.59 
 
 
560 aa  296  9e-79  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  0.196109  n/a   
 
 
-
 
NC_007925  RPC_4147  methyl-accepting chemotaxis sensory transducer  48.67 
 
 
694 aa  296  9e-79  Rhodopseudomonas palustris BisB18  Bacteria  normal  normal 
 
 
-
 
NC_011757  Mchl_1427  methyl-accepting chemotaxis sensory transducer  48.26 
 
 
562 aa  294  3e-78  Methylobacterium chloromethanicum CM4  Bacteria  normal  0.309452  normal 
 
 
-
 
NC_010725  Mpop_1216  methyl-accepting chemotaxis sensory transducer  47.66 
 
 
562 aa  294  3e-78  Methylobacterium populi BJ001  Bacteria  normal  0.743011  normal  0.567814 
 
 
-
 
NC_010725  Mpop_1048  methyl-accepting chemotaxis sensory transducer  36.48 
 
 
559 aa  293  5e-78  Methylobacterium populi BJ001  Bacteria  normal  normal  0.165383 
 
 
-
 
NC_011004  Rpal_4783  methyl-accepting chemotaxis sensory transducer  47.73 
 
 
730 aa  293  5e-78  Rhodopseudomonas palustris TIE-1  Bacteria  normal  n/a   
 
 
-
 
NC_007958  RPD_3107  chemotaxis sensory transducer  47.77 
 
 
674 aa  293  8e-78  Rhodopseudomonas palustris BisB5  Bacteria  normal  normal  0.0664997 
 
 
-
 
NC_007778  RPB_2250  methyl-accepting chemotaxis sensory transducer  47.85 
 
 
670 aa  291  2e-77  Rhodopseudomonas palustris HaA2  Bacteria  normal  normal 
 
 
-
 
NC_009485  BBta_2904  putative methyl-accepting chemotaxis protein  48.97 
 
 
568 aa  290  5.0000000000000004e-77  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.481458  normal  0.283558 
 
 
-
 
NC_010172  Mext_1266  chemotaxis sensory transducer  47.45 
 
 
562 aa  289  1e-76  Methylobacterium extorquens PA1  Bacteria  normal  normal 
 
 
-
 
NC_011004  Rpal_4271  methyl-accepting chemotaxis sensory transducer  45.72 
 
 
567 aa  288  2e-76  Rhodopseudomonas palustris TIE-1  Bacteria  normal  n/a   
 
 
-
 
NC_011757  Mchl_3907  methyl-accepting chemotaxis sensory transducer  47.4 
 
 
565 aa  288  2e-76  Methylobacterium chloromethanicum CM4  Bacteria  normal  normal 
 
 
-
 
NC_007958  RPD_2465  chemotaxis sensory transducer  46.89 
 
 
561 aa  288  2e-76  Rhodopseudomonas palustris BisB5  Bacteria  normal  0.5909  normal  0.697276 
 
 
-
 
NC_007778  RPB_2983  methyl-accepting chemotaxis sensory transducer  46.75 
 
 
561 aa  287  2.9999999999999996e-76  Rhodopseudomonas palustris HaA2  Bacteria  normal  normal  0.0323515 
 
 
-
 
NC_011004  Rpal_0924  methyl-accepting chemotaxis sensory transducer  49.33 
 
 
712 aa  287  2.9999999999999996e-76  Rhodopseudomonas palustris TIE-1  Bacteria  normal  0.991242  n/a   
 
 
-
 
NC_007925  RPC_1795  methyl-accepting chemotaxis sensory transducer  46.89 
 
 
561 aa  287  2.9999999999999996e-76  Rhodopseudomonas palustris BisB18  Bacteria  normal  0.432423  normal  0.0230577 
 
 
-
 
NC_007958  RPD_0153  chemotaxis sensory transducer  46.94 
 
 
602 aa  288  2.9999999999999996e-76  Rhodopseudomonas palustris BisB5  Bacteria  normal  normal 
 
 
-
 
NC_007643  Rru_A3563  chemotaxis sensory transducer  46.63 
 
 
563 aa  286  7e-76  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  n/a   
 
 
-
 
NC_010725  Mpop_3344  methyl-accepting chemotaxis sensory transducer  49.47 
 
 
561 aa  286  7e-76  Methylobacterium populi BJ001  Bacteria  normal  0.828703  normal 
 
 
-
 
NC_010511  M446_0383  methyl-accepting chemotaxis sensory transducer  47.73 
 
 
559 aa  286  9e-76  Methylobacterium sp. 4-46  Bacteria  normal  normal  0.50218 
 
 
-
 
NC_007643  Rru_A1408  chemotaxis sensory transducer  46.95 
 
 
568 aa  285  1.0000000000000001e-75  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  0.591131  n/a   
 
 
-
 
NC_007925  RPC_4527  methyl-accepting chemotaxis sensory transducer  50 
 
 
667 aa  286  1.0000000000000001e-75  Rhodopseudomonas palustris BisB18  Bacteria  normal  normal  0.527831 
 
 
-
 
NC_009485  BBta_7506  putative methyl-accepting chemotaxis protein  48.16 
 
 
671 aa  285  1.0000000000000001e-75  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal 
 
 
-
 
NC_007643  Rru_A0568  chemotaxis sensory transducer  45.31 
 
 
662 aa  285  2.0000000000000002e-75  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  n/a   
 
 
-
 
NC_007925  RPC_1843  methyl-accepting chemotaxis sensory transducer  45.6 
 
 
568 aa  284  2.0000000000000002e-75  Rhodopseudomonas palustris BisB18  Bacteria  normal  normal  0.618754 
 
 
-
 
NC_010725  Mpop_2032  methyl-accepting chemotaxis sensory transducer  51.58 
 
 
558 aa  285  2.0000000000000002e-75  Methylobacterium populi BJ001  Bacteria  normal  normal  0.176129 
 
 
-
 
NC_009485  BBta_0575  methyl-accepting chemotaxis sensory transducer  48.15 
 
 
681 aa  284  3.0000000000000004e-75  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal 
 
 
-
 
NC_010517  Mrad2831_6434  methyl-accepting chemotaxis sensory transducer  50.42 
 
 
557 aa  284  3.0000000000000004e-75  Methylobacterium radiotolerans JCM 2831  Bacteria  n/a    normal 
 
 
-
 
NC_011004  Rpal_5172  methyl-accepting chemotaxis sensory transducer  50.28 
 
 
656 aa  284  3.0000000000000004e-75  Rhodopseudomonas palustris TIE-1  Bacteria  normal  n/a   
 
 
-
 
NC_007925  RPC_4101  methyl-accepting chemotaxis sensory transducer  50.14 
 
 
698 aa  284  3.0000000000000004e-75  Rhodopseudomonas palustris BisB18  Bacteria  normal  normal 
 
 
-
 
NC_007958  RPD_0497  chemotaxis sensory transducer  49.21 
 
 
577 aa  284  3.0000000000000004e-75  Rhodopseudomonas palustris BisB5  Bacteria  normal  normal 
 
 
-
 
NC_009485  BBta_7508  putative methyl-accepting chemotaxis protein (with a HAMP region)  48.59 
 
 
552 aa  284  4.0000000000000003e-75  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.692825  normal 
 
 
-
 
NC_007925  RPC_0061  methyl-accepting chemotaxis sensory transducer  47.88 
 
 
674 aa  284  4.0000000000000003e-75  Rhodopseudomonas palustris BisB18  Bacteria  normal  normal 
 
 
-
 
NC_009485  BBta_0865  methyl-accepting chemotaxis sensory transducer  47.65 
 
 
712 aa  283  5.000000000000001e-75  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal  0.163995 
 
 
-
 
NC_009485  BBta_2901  methyl-accepting chemotaxis sensory transducer  49.43 
 
 
674 aa  283  7.000000000000001e-75  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.14772  normal  0.22504 
 
 
-
 
NC_007925  RPC_3476  methyl-accepting chemotaxis sensory transducer  49.08 
 
 
641 aa  283  8.000000000000001e-75  Rhodopseudomonas palustris BisB18  Bacteria  normal  0.640734  normal 
 
 
-
 
NC_007406  Nwi_2996  methyl-accepting chemotaxis protein  46.81 
 
 
698 aa  282  1e-74  Nitrobacter winogradskyi Nb-255  Bacteria  normal  normal 
 
 
-
 
NC_010511  M446_2091  methyl-accepting chemotaxis sensory transducer  48.66 
 
 
562 aa  282  1e-74  Methylobacterium sp. 4-46  Bacteria  normal  normal  0.0245477 
 
 
-
 
NC_011004  Rpal_5119  methyl-accepting chemotaxis sensory transducer  46.49 
 
 
563 aa  281  2e-74  Rhodopseudomonas palustris TIE-1  Bacteria  normal  n/a   
 
 
-
 
NC_011004  Rpal_5144  methyl-accepting chemotaxis sensory transducer  46.79 
 
 
686 aa  281  3e-74  Rhodopseudomonas palustris TIE-1  Bacteria  normal  n/a   
 
 
-
 
NC_010505  Mrad2831_1828  methyl-accepting chemotaxis sensory transducer  36.49 
 
 
579 aa  281  3e-74  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal  0.0132835 
 
 
-
 
NC_007958  RPD_1025  methyl-accepting chemotaxis sensory transducer  47.27 
 
 
681 aa  280  4e-74  Rhodopseudomonas palustris BisB5  Bacteria  normal  normal 
 
 
-
 
NC_010505  Mrad2831_3824  methyl-accepting chemotaxis sensory transducer  47.85 
 
 
561 aa  279  9e-74  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal 
 
 
-
 
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