Gene RPD_1025 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRPD_1025 
Symbol 
ID4021500 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRhodopseudomonas palustris BisB5 
KingdomBacteria 
Replicon accessionNC_007958 
Strand
Start bp1165417 
End bp1167462 
Gene Length2046 bp 
Protein Length681 aa 
Translation table11 
GC content67% 
IMG OID637961216 
Productmethyl-accepting chemotaxis sensory transducer 
Protein accessionYP_568164 
Protein GI91975505 
COG category[N] Cell motility
[T] Signal transduction mechanisms 
COG ID[COG0840] Methyl-accepting chemotaxis protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones15 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones14 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGGGTAATA CAAAAGCTGA CGGACCGCGG CATTGGACCG CGGCGATGCC GTCATTGCGT 
TTTCGCGGCA AGGTGACGCT CGGCTTCGCG GTGGTGCTGG GGATCACGGC GATCAGCATG
AGCCTCGCTT ATGTGGGCTT CGAGCGGGTC TCCGAAGGTG TCGTCAGCTA CCGCGACGGC
GTCGGGCAAT CCGATCTCGC CCGCAATATT GATCGGGCGC TGACATCCTA TCAGGCCCTC
GCGCGCTATT ATGTGGTGAC CGGCAAGGAC GACGACGCCA AAGCGGCGGT TGCGGCGCAA
CAAGAACTCA AGGACGCGAT CGATCAGTCG CTGCTGGCGG CGACCAAGCC GGAGCGGCGC
GAGCGGATTG TCCGGCTGGC CGGCGAGTTC GACGGCTTCG CCAAGCTGTT CGGCGAAGTT
CAGGCGCTCA AGACCGAGAG CGCGATGCTG GTACAGAACC GGCTCGCCCG CGGCGGCAAC
AATCTGCGCT ACAAGGTCGA CGACCTTGCC AGCACGGCCG GTGAAAACGA ACTCCCGGCC
GTCGAACTGG GCGCCAAGCA GGTGGCCGGT CAGTTTCTCG CGGCGACGAC GCAGGTCAGC
ACCTTCGTGA TCAATTTCGA TCGCCGCGCC TCGGACAGCG CGCTGGCGCG GCTCAAATTC
GTCGAGAACG GGCTGAAAGC GATCTCGACC GACAATACAG ACATCCTCAC CCGGCTGAAG
GAGCTGTCCG GCCTGCTTGA TGACTACAGG CAGACGCTGA TCAAGCTCGT CGACAACTCC
AAGGCGATCG ACGCCCGCGT CGCGCAGATG CTGGAGGCGG CCGCGGCGAT CACCAGGAAT
TCGGCGGCGA TGAAGGCCGA TCTGCTTGCC GCTCAGCAAA GGCTGGAACG GGAGTCCGAC
GCCACCGTCG CCTCGACCAA GCGCCTCGTG GCGATGCTCG GCGTCGGCGG CTTCCTGCTC
GGCGCCGTGC TGGCGCTCCT GCTCGGGCGC GGCATCTCGC GGCCGATGCA GACGATGTGC
GGTGCGATGC GCAAGCTGGC GGATGGCGAC TTCAACGTGG TTCTGCCCGG CCTCGGCCGC
AAGGACGAGA TCGGCGACAT GGCCGCCGCG GTGGAGTCGT TCAAGGTCCA GGCCGCCCGC
AAGGCCGAGC ACGACGCCAC GGCGCGTGAG ATCGAGGCGA GCGCCGGTCG CGAGGCGCGG
CGCGCCGAAC TGATCGGCTT CGCCAGCGAG TTCGAGGCCG CGGTCGGCGC GATCGTGTCG
CACGTCTCCG ACGCAGCTGA GCAGCTCGAG AAGGCTGCGG ACACGCTGAC CCGGACGGCC
GAGACCACGC AAAGCCTGTC CAGTGAAGTC GCCGGCGCAT CGCAGCACGC GTCATCCAAC
ATGCAGTCGG TGGCGACGGC CACCGGGCAG CTGTCGGCCT CGGTCGGCGA GATCGGCCGT
CAGGTCGGCC AGTCAAGCCG GATCGCCGGC AGCGCGGTCG AACAGGCGAA CGAGACCGAC
GGCCGGATCG GCAAGCTGAC CCAGGCGGCG CAACAGATCG GCGACGTGAT CCGGCTGATC
ACCGCGATCG CCGAGCAGAC CAATCTGCTG GCGCTCAATG CCACGATCGA AGCGGCGCGC
GCCGGCGAGG CTGGCCGCGG CTTCGCGGTG GTCGCCGCCG AAGTGAAATC GCTGGCGAGC
CAGACGGCGA AGGCGACCGA CGAAATCTCG TCGCAGGTGG CCGAGATGCA GCAGGCGACC
CAGGACTCGG TGGCGTCGAT CAAGAAGATC GGCGACACCA TCACCGAGAT TTCGACGATC
TCCGCCTCGA TCGCCAGCGC CGTGTCGCAG CAGGGCGCGG CGACGCGCGA AATCGCCGAC
AGCGTGCAGA GCGTCGCGCG CGGCACCCAG CAGATGGCGA GCAACATCAC CGCGGTCAAT
CGCGGGGCCT CCGACACCGG CGCTGCCTCC GCCGAGGTGC TGCACTCGGC GCGCAGCCTG
TCGTCGGAGA GCGCGCGGCT GCGCACCGAG CTCGATCGCT TCATGGCGAA CATCCGCGCG
GCCTAA
 
Protein sequence
MGNTKADGPR HWTAAMPSLR FRGKVTLGFA VVLGITAISM SLAYVGFERV SEGVVSYRDG 
VGQSDLARNI DRALTSYQAL ARYYVVTGKD DDAKAAVAAQ QELKDAIDQS LLAATKPERR
ERIVRLAGEF DGFAKLFGEV QALKTESAML VQNRLARGGN NLRYKVDDLA STAGENELPA
VELGAKQVAG QFLAATTQVS TFVINFDRRA SDSALARLKF VENGLKAIST DNTDILTRLK
ELSGLLDDYR QTLIKLVDNS KAIDARVAQM LEAAAAITRN SAAMKADLLA AQQRLERESD
ATVASTKRLV AMLGVGGFLL GAVLALLLGR GISRPMQTMC GAMRKLADGD FNVVLPGLGR
KDEIGDMAAA VESFKVQAAR KAEHDATARE IEASAGREAR RAELIGFASE FEAAVGAIVS
HVSDAAEQLE KAADTLTRTA ETTQSLSSEV AGASQHASSN MQSVATATGQ LSASVGEIGR
QVGQSSRIAG SAVEQANETD GRIGKLTQAA QQIGDVIRLI TAIAEQTNLL ALNATIEAAR
AGEAGRGFAV VAAEVKSLAS QTAKATDEIS SQVAEMQQAT QDSVASIKKI GDTITEISTI
SASIASAVSQ QGAATREIAD SVQSVARGTQ QMASNITAVN RGASDTGAAS AEVLHSARSL
SSESARLRTE LDRFMANIRA A