More than 300 homologs were found in PanDaTox collection
for query gene Rru_A1408 on replicon NC_007643
Organism: Rhodospirillum rubrum ATCC 11170



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_007643  Rru_A1408  chemotaxis sensory transducer  100 
 
 
568 aa  1120    Rhodospirillum rubrum ATCC 11170  Bacteria  normal  0.591131  n/a   
 
 
-
 
NC_009485  BBta_6635  methyl-accepting chemotaxis protein  41.16 
 
 
565 aa  357  2.9999999999999997e-97  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.459746  normal  0.104137 
 
 
-
 
NC_009485  BBta_6483  methyl-accepting chemotaxis protein  48.06 
 
 
565 aa  344  2e-93  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.877741  normal 
 
 
-
 
NC_007643  Rru_A1802  chemotaxis sensory transducer  68.06 
 
 
438 aa  345  2e-93  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  n/a   
 
 
-
 
NC_009485  BBta_0969  methyl-accepting chemotaxis sensory transducer  54.29 
 
 
562 aa  342  1e-92  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.956339  normal  0.570918 
 
 
-
 
NC_007925  RPC_4407  methyl-accepting chemotaxis sensory transducer  38.1 
 
 
566 aa  332  8e-90  Rhodopseudomonas palustris BisB18  Bacteria  normal  normal  0.365939 
 
 
-
 
NC_007925  RPC_4406  methyl-accepting chemotaxis sensory transducer  49.61 
 
 
566 aa  331  2e-89  Rhodopseudomonas palustris BisB18  Bacteria  normal  normal  0.341232 
 
 
-
 
NC_007958  RPD_3547  chemotaxis sensory transducer  50.13 
 
 
566 aa  326  7e-88  Rhodopseudomonas palustris BisB5  Bacteria  normal  normal 
 
 
-
 
NC_011004  Rpal_4118  methyl-accepting chemotaxis sensory transducer  51.64 
 
 
567 aa  323  4e-87  Rhodopseudomonas palustris TIE-1  Bacteria  normal  n/a   
 
 
-
 
NC_009485  BBta_2904  putative methyl-accepting chemotaxis protein  38.86 
 
 
568 aa  322  9.999999999999999e-87  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.481458  normal  0.283558 
 
 
-
 
NC_011004  Rpal_2757  methyl-accepting chemotaxis sensory transducer  39.06 
 
 
561 aa  320  3e-86  Rhodopseudomonas palustris TIE-1  Bacteria  normal  0.0630329  n/a   
 
 
-
 
NC_007778  RPB_2983  methyl-accepting chemotaxis sensory transducer  38.62 
 
 
561 aa  318  2e-85  Rhodopseudomonas palustris HaA2  Bacteria  normal  normal  0.0323515 
 
 
-
 
NC_007964  Nham_1080  methyl-accepting chemotaxis sensory transducer  51.65 
 
 
698 aa  317  3e-85  Nitrobacter hamburgensis X14  Bacteria  normal  0.0139762  n/a   
 
 
-
 
NC_007643  Rru_A2484  chemotaxis sensory transducer  50.13 
 
 
563 aa  317  3e-85  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  0.1562  n/a   
 
 
-
 
NC_007925  RPC_1795  methyl-accepting chemotaxis sensory transducer  50.91 
 
 
561 aa  317  3e-85  Rhodopseudomonas palustris BisB18  Bacteria  normal  0.432423  normal  0.0230577 
 
 
-
 
NC_007778  RPB_2358  methyl-accepting chemotaxis sensory transducer  48.66 
 
 
673 aa  317  4e-85  Rhodopseudomonas palustris HaA2  Bacteria  normal  normal  0.207811 
 
 
-
 
NC_007406  Nwi_2996  methyl-accepting chemotaxis protein  51.07 
 
 
698 aa  317  5e-85  Nitrobacter winogradskyi Nb-255  Bacteria  normal  normal 
 
 
-
 
NC_007643  Rru_A1293  methyl-accepting chemotaxis sensory transducer  52.17 
 
 
562 aa  317  5e-85  Rhodospirillum rubrum ATCC 11170  Bacteria  decreased coverage  0.00511002  n/a   
 
 
-
 
NC_011004  Rpal_3598  methyl-accepting chemotaxis sensory transducer  51.22 
 
 
672 aa  317  5e-85  Rhodopseudomonas palustris TIE-1  Bacteria  normal  n/a   
 
 
-
 
NC_009485  BBta_2903  methyl-accepting chemotaxis sensory transducer  39.59 
 
 
568 aa  315  9.999999999999999e-85  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.335645  normal  0.0996392 
 
 
-
 
NC_007925  RPC_3380  methyl-accepting chemotaxis sensory transducer  49.6 
 
 
567 aa  315  9.999999999999999e-85  Rhodopseudomonas palustris BisB18  Bacteria  normal  normal  0.689596 
 
 
-
 
NC_007958  RPD_1918  chemotaxis sensory transducer  50.41 
 
 
688 aa  313  4.999999999999999e-84  Rhodopseudomonas palustris BisB5  Bacteria  normal  normal  0.537222 
 
 
-
 
NC_009485  BBta_2905  putative methyl-accepting chemotaxis protein  51.52 
 
 
542 aa  312  9e-84  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.234112  normal  0.211145 
 
 
-
 
NC_007958  RPD_2465  chemotaxis sensory transducer  39.41 
 
 
561 aa  312  9e-84  Rhodopseudomonas palustris BisB5  Bacteria  normal  0.5909  normal  0.697276 
 
 
-
 
NC_007958  RPD_0065  chemotaxis sensory transducer  49.86 
 
 
688 aa  311  2e-83  Rhodopseudomonas palustris BisB5  Bacteria  normal  normal  0.0714339 
 
 
-
 
NC_010517  Mrad2831_6434  methyl-accepting chemotaxis sensory transducer  47.39 
 
 
557 aa  311  2.9999999999999997e-83  Methylobacterium radiotolerans JCM 2831  Bacteria  n/a    normal 
 
 
-
 
NC_007958  RPD_3107  chemotaxis sensory transducer  49.74 
 
 
674 aa  309  6.999999999999999e-83  Rhodopseudomonas palustris BisB5  Bacteria  normal  normal  0.0664997 
 
 
-
 
NC_009485  BBta_4464  methyl-accepting chemotaxis sensory transducer  49.45 
 
 
573 aa  309  6.999999999999999e-83  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.610641  normal  0.757777 
 
 
-
 
NC_009485  BBta_1388  methyl-accepting chemotaxis sensory transducer  50 
 
 
656 aa  308  1.0000000000000001e-82  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.0527529  normal  0.207734 
 
 
-
 
NC_007643  Rru_A3563  chemotaxis sensory transducer  52.15 
 
 
563 aa  308  1.0000000000000001e-82  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  n/a   
 
 
-
 
NC_007778  RPB_3545  methyl-accepting chemotaxis sensory transducer  50.55 
 
 
689 aa  308  1.0000000000000001e-82  Rhodopseudomonas palustris HaA2  Bacteria  normal  0.457552  normal  0.598514 
 
 
-
 
NC_007925  RPC_2149  methyl-accepting chemotaxis sensory transducer  49.86 
 
 
675 aa  308  2.0000000000000002e-82  Rhodopseudomonas palustris BisB18  Bacteria  normal  normal  0.0391093 
 
 
-
 
NC_007925  RPC_2742  methyl-accepting chemotaxis sensory transducer  50 
 
 
560 aa  308  2.0000000000000002e-82  Rhodopseudomonas palustris BisB18  Bacteria  normal  normal  0.429688 
 
 
-
 
NC_011757  Mchl_3471  methyl-accepting chemotaxis sensory transducer  50 
 
 
561 aa  308  3e-82  Methylobacterium chloromethanicum CM4  Bacteria  normal  0.130295  normal 
 
 
-
 
NC_011004  Rpal_1871  methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor  51.64 
 
 
716 aa  307  4.0000000000000004e-82  Rhodopseudomonas palustris TIE-1  Bacteria  normal  n/a   
 
 
-
 
NC_007925  RPC_2744  methyl-accepting chemotaxis sensory transducer  45.43 
 
 
572 aa  306  7e-82  Rhodopseudomonas palustris BisB18  Bacteria  normal  0.696609  normal  0.585687 
 
 
-
 
NC_010172  Mext_3147  chemotaxis sensory transducer  49.73 
 
 
561 aa  305  1.0000000000000001e-81  Methylobacterium extorquens PA1  Bacteria  normal  0.0908078  normal 
 
 
-
 
NC_007958  RPD_0497  chemotaxis sensory transducer  52.19 
 
 
577 aa  305  1.0000000000000001e-81  Rhodopseudomonas palustris BisB5  Bacteria  normal  normal 
 
 
-
 
NC_007778  RPB_4280  methyl-accepting chemotaxis sensory transducer  50.96 
 
 
563 aa  303  4.0000000000000003e-81  Rhodopseudomonas palustris HaA2  Bacteria  normal  normal 
 
 
-
 
NC_009485  BBta_1840  methyl-accepting chemotaxis sensory transducer  48.66 
 
 
561 aa  303  5.000000000000001e-81  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal  0.745103 
 
 
-
 
NC_007925  RPC_4147  methyl-accepting chemotaxis sensory transducer  49.57 
 
 
694 aa  303  5.000000000000001e-81  Rhodopseudomonas palustris BisB18  Bacteria  normal  normal 
 
 
-
 
NC_010505  Mrad2831_2241  methyl-accepting chemotaxis sensory transducer  38.78 
 
 
566 aa  303  7.000000000000001e-81  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal 
 
 
-
 
NC_009485  BBta_2901  methyl-accepting chemotaxis sensory transducer  50.98 
 
 
674 aa  302  1e-80  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.14772  normal  0.22504 
 
 
-
 
NC_010172  Mext_2555  chemotaxis sensory transducer  55.74 
 
 
561 aa  302  1e-80  Methylobacterium extorquens PA1  Bacteria  normal  0.834906  normal 
 
 
-
 
NC_007778  RPB_2250  methyl-accepting chemotaxis sensory transducer  49.2 
 
 
670 aa  301  3e-80  Rhodopseudomonas palustris HaA2  Bacteria  normal  normal 
 
 
-
 
NC_009485  BBta_2368  putative methyl-accepting chemotaxis receptor/sensory transducer precursor  38.54 
 
 
561 aa  300  4e-80  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal  0.280114 
 
 
-
 
NC_007925  RPC_4101  methyl-accepting chemotaxis sensory transducer  50.28 
 
 
698 aa  299  8e-80  Rhodopseudomonas palustris BisB18  Bacteria  normal  normal 
 
 
-
 
NC_007643  Rru_A2076  chemotaxis sensory transducer  44.71 
 
 
561 aa  299  1e-79  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  0.723039  n/a   
 
 
-
 
NC_010725  Mpop_5403  methyl-accepting chemotaxis sensory transducer  44.24 
 
 
538 aa  299  1e-79  Methylobacterium populi BJ001  Bacteria  normal  normal 
 
 
-
 
NC_007778  RPB_0192  methyl-accepting chemotaxis sensory transducer  50.14 
 
 
688 aa  298  2e-79  Rhodopseudomonas palustris HaA2  Bacteria  normal  normal 
 
 
-
 
NC_007925  RPC_3804  methyl-accepting chemotaxis sensory transducer  49.73 
 
 
655 aa  298  2e-79  Rhodopseudomonas palustris BisB18  Bacteria  normal  0.772812  normal 
 
 
-
 
NC_009485  BBta_2900  putative methyl-accepting chemotaxis receptor/sensory transducer (chemoreceptor)  50.41 
 
 
675 aa  297  3e-79  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.142675  normal  0.173139 
 
 
-
 
NC_010511  M446_2363  methyl-accepting chemotaxis sensory transducer  44.95 
 
 
695 aa  297  3e-79  Methylobacterium sp. 4-46  Bacteria  normal  normal 
 
 
-
 
NC_007643  Rru_A2078  chemotaxis sensory transducer  50.43 
 
 
561 aa  297  4e-79  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  0.960991  n/a   
 
 
-
 
NC_009485  BBta_7508  putative methyl-accepting chemotaxis protein (with a HAMP region)  50 
 
 
552 aa  297  4e-79  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.692825  normal 
 
 
-
 
NC_010511  M446_2708  methyl-accepting chemotaxis sensory transducer  45.82 
 
 
696 aa  297  5e-79  Methylobacterium sp. 4-46  Bacteria  normal  0.674681  normal  0.192785 
 
 
-
 
NC_007643  Rru_A0158  methyl-accepting chemotaxis sensory transducer  51.42 
 
 
561 aa  296  7e-79  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  n/a   
 
 
-
 
NC_007925  RPC_1843  methyl-accepting chemotaxis sensory transducer  49.28 
 
 
568 aa  296  9e-79  Rhodopseudomonas palustris BisB18  Bacteria  normal  normal  0.618754 
 
 
-
 
NC_010725  Mpop_1216  methyl-accepting chemotaxis sensory transducer  50.54 
 
 
562 aa  295  1e-78  Methylobacterium populi BJ001  Bacteria  normal  0.743011  normal  0.567814 
 
 
-
 
NC_011004  Rpal_4271  methyl-accepting chemotaxis sensory transducer  47.99 
 
 
567 aa  295  1e-78  Rhodopseudomonas palustris TIE-1  Bacteria  normal  n/a   
 
 
-
 
NC_007925  RPC_3161  methyl-accepting chemotaxis sensory transducer  48.38 
 
 
731 aa  295  1e-78  Rhodopseudomonas palustris BisB18  Bacteria  normal  0.072786  normal 
 
 
-
 
NC_011757  Mchl_2778  methyl-accepting chemotaxis sensory transducer  55.19 
 
 
558 aa  294  3e-78  Methylobacterium chloromethanicum CM4  Bacteria  normal  0.060825  normal 
 
 
-
 
NC_007958  RPD_3904  chemotaxis sensory transducer  45.31 
 
 
566 aa  293  4e-78  Rhodopseudomonas palustris BisB5  Bacteria  normal  normal 
 
 
-
 
NC_011004  Rpal_2025  methyl-accepting chemotaxis sensory transducer  47.11 
 
 
688 aa  293  5e-78  Rhodopseudomonas palustris TIE-1  Bacteria  normal  0.0110809  n/a   
 
 
-
 
NC_011004  Rpal_1830  methyl-accepting chemotaxis sensory transducer  48.14 
 
 
563 aa  293  8e-78  Rhodopseudomonas palustris TIE-1  Bacteria  normal  n/a   
 
 
-
 
NC_010172  Mext_2072  chemotaxis sensory transducer  49.05 
 
 
556 aa  292  1e-77  Methylobacterium extorquens PA1  Bacteria  normal  0.68132  normal  0.341201 
 
 
-
 
NC_007778  RPB_2961  methyl-accepting chemotaxis sensory transducer  50.82 
 
 
563 aa  292  1e-77  Rhodopseudomonas palustris HaA2  Bacteria  normal  normal 
 
 
-
 
NC_011004  Rpal_5119  methyl-accepting chemotaxis sensory transducer  48.1 
 
 
563 aa  292  1e-77  Rhodopseudomonas palustris TIE-1  Bacteria  normal  n/a   
 
 
-
 
NC_007958  RPD_0153  chemotaxis sensory transducer  48.04 
 
 
602 aa  292  1e-77  Rhodopseudomonas palustris BisB5  Bacteria  normal  normal 
 
 
-
 
NC_007958  RPD_3409  chemotaxis sensory transducer  51.29 
 
 
651 aa  291  2e-77  Rhodopseudomonas palustris BisB5  Bacteria  normal  0.304746  normal 
 
 
-
 
NC_011757  Mchl_3733  methyl-accepting chemotaxis sensory transducer  48.95 
 
 
558 aa  291  2e-77  Methylobacterium chloromethanicum CM4  Bacteria  normal  0.152196  normal 
 
 
-
 
NC_010172  Mext_3424  chemotaxis sensory transducer  48.95 
 
 
558 aa  291  2e-77  Methylobacterium extorquens PA1  Bacteria  normal  normal  0.574813 
 
 
-
 
NC_011757  Mchl_2346  methyl-accepting chemotaxis sensory transducer  49.05 
 
 
556 aa  291  2e-77  Methylobacterium chloromethanicum CM4  Bacteria  normal  normal  0.395485 
 
 
-
 
NC_007925  RPC_3379  methyl-accepting chemotaxis sensory transducer  50.56 
 
 
587 aa  291  2e-77  Rhodopseudomonas palustris BisB18  Bacteria  normal  0.787169  normal 
 
 
-
 
NC_010511  M446_2091  methyl-accepting chemotaxis sensory transducer  49.73 
 
 
562 aa  291  3e-77  Methylobacterium sp. 4-46  Bacteria  normal  normal  0.0245477 
 
 
-
 
NC_007958  RPD_0994  chemotaxis sensory transducer  46.81 
 
 
656 aa  290  3e-77  Rhodopseudomonas palustris BisB5  Bacteria  normal  0.357708  normal 
 
 
-
 
NC_007778  RPB_1317  methyl-accepting chemotaxis sensory transducer  47.86 
 
 
560 aa  290  5.0000000000000004e-77  Rhodopseudomonas palustris HaA2  Bacteria  normal  normal  0.14669 
 
 
-
 
NC_010172  Mext_1266  chemotaxis sensory transducer  39.69 
 
 
562 aa  290  5.0000000000000004e-77  Methylobacterium extorquens PA1  Bacteria  normal  normal 
 
 
-
 
NC_010725  Mpop_0581  methyl-accepting chemotaxis sensory transducer  48.69 
 
 
562 aa  290  6e-77  Methylobacterium populi BJ001  Bacteria  normal  0.0281709  decreased coverage  0.00474558 
 
 
-
 
NC_011757  Mchl_4791  methyl-accepting chemotaxis sensory transducer  50.72 
 
 
563 aa  288  2e-76  Methylobacterium chloromethanicum CM4  Bacteria  normal  0.685315  normal 
 
 
-
 
NC_010725  Mpop_0223  methyl-accepting chemotaxis sensory transducer  53.42 
 
 
565 aa  288  2e-76  Methylobacterium populi BJ001  Bacteria  normal  normal 
 
 
-
 
NC_011757  Mchl_1427  methyl-accepting chemotaxis sensory transducer  39.35 
 
 
562 aa  288  2e-76  Methylobacterium chloromethanicum CM4  Bacteria  normal  0.309452  normal 
 
 
-
 
NC_010725  Mpop_3344  methyl-accepting chemotaxis sensory transducer  50 
 
 
561 aa  288  2e-76  Methylobacterium populi BJ001  Bacteria  normal  0.828703  normal 
 
 
-
 
NC_010172  Mext_0820  chemotaxis sensory transducer  51.44 
 
 
608 aa  288  2.9999999999999996e-76  Methylobacterium extorquens PA1  Bacteria  normal  0.254614  normal  0.216431 
 
 
-
 
NC_011004  Rpal_4787  methyl-accepting chemotaxis sensory transducer  48.56 
 
 
561 aa  287  2.9999999999999996e-76  Rhodopseudomonas palustris TIE-1  Bacteria  normal  0.708956  n/a   
 
 
-
 
NC_007958  RPD_1867  chemotaxis sensory transducer  46.38 
 
 
714 aa  287  2.9999999999999996e-76  Rhodopseudomonas palustris BisB5  Bacteria  normal  normal  0.133032 
 
 
-
 
NC_010511  M446_0619  methyl-accepting chemotaxis sensory transducer  50 
 
 
561 aa  287  4e-76  Methylobacterium sp. 4-46  Bacteria  normal  normal  0.0130228 
 
 
-
 
NC_010511  M446_0383  methyl-accepting chemotaxis sensory transducer  48.56 
 
 
559 aa  287  4e-76  Methylobacterium sp. 4-46  Bacteria  normal  normal  0.50218 
 
 
-
 
NC_010725  Mpop_4549  methyl-accepting chemotaxis sensory transducer  53.58 
 
 
561 aa  286  5e-76  Methylobacterium populi BJ001  Bacteria  normal  normal 
 
 
-
 
NC_009485  BBta_5110  hypothetical protein  50.4 
 
 
688 aa  286  8e-76  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal  0.791751 
 
 
-
 
NC_007925  RPC_4104  methyl-accepting chemotaxis sensory transducer  46.53 
 
 
586 aa  285  1.0000000000000001e-75  Rhodopseudomonas palustris BisB18  Bacteria  normal  0.783692  normal 
 
 
-
 
NC_009485  BBta_6717  methyl-accepting chemotaxis sensory transducer  46.55 
 
 
741 aa  285  2.0000000000000002e-75  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.447835  normal  0.587139 
 
 
-
 
NC_007778  RPB_1977  methyl-accepting chemotaxis sensory transducer  49.57 
 
 
651 aa  285  2.0000000000000002e-75  Rhodopseudomonas palustris HaA2  Bacteria  normal  0.064764  normal 
 
 
-
 
NC_011757  Mchl_0779  methyl-accepting chemotaxis sensory transducer with Cache sensor  51.44 
 
 
558 aa  284  2.0000000000000002e-75  Methylobacterium chloromethanicum CM4  Bacteria  normal  0.0546434  normal  0.151916 
 
 
-
 
NC_007925  RPC_3476  methyl-accepting chemotaxis sensory transducer  43.37 
 
 
641 aa  285  2.0000000000000002e-75  Rhodopseudomonas palustris BisB18  Bacteria  normal  0.640734  normal 
 
 
-
 
NC_011757  Mchl_3907  methyl-accepting chemotaxis sensory transducer  50.14 
 
 
565 aa  285  2.0000000000000002e-75  Methylobacterium chloromethanicum CM4  Bacteria  normal  normal 
 
 
-
 
NC_007958  RPD_0995  chemotaxis sensory transducer  46.65 
 
 
656 aa  285  2.0000000000000002e-75  Rhodopseudomonas palustris BisB5  Bacteria  normal  0.880627  normal 
 
 
-
 
NC_007643  Rru_A2546  chemotaxis sensory transducer  48.99 
 
 
690 aa  283  4.0000000000000003e-75  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  n/a   
 
 
-
 
NC_007925  RPC_1253  methyl-accepting chemotaxis sensory transducer  43.58 
 
 
567 aa  284  4.0000000000000003e-75  Rhodopseudomonas palustris BisB18  Bacteria  normal  normal  0.010155 
 
 
-
 
NC_009485  BBta_2906  putative methyl-accepting chemotaxis protein  39.47 
 
 
564 aa  283  4.0000000000000003e-75  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.430156  normal  0.106702 
 
 
-
 
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