More than 300 homologs were found in PanDaTox collection
for query gene Ssed_4500 on replicon NC_009831
Organism: Shewanella sediminis HAW-EB3



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_009831  Ssed_4500  methyl-accepting chemotaxis protein  100 
 
 
467 aa  927    Shewanella sediminis HAW-EB3  Bacteria  normal  hitchhiker  0.000000193555 
 
 
-
 
NC_008345  Sfri_3852  methyl-accepting chemotaxis sensory transducer  61.51 
 
 
467 aa  545  1e-154  Shewanella frigidimarina NCIMB 400  Bacteria  normal  n/a   
 
 
-
 
NC_013456  VEA_003409  methyl-accepting chemotaxis protein  50.96 
 
 
467 aa  419  1e-116  Vibrio sp. Ex25  Bacteria  decreased coverage  0.0000050033  n/a   
 
 
-
 
NC_009783  VIBHAR_02368  hypothetical protein  50.64 
 
 
472 aa  415  9.999999999999999e-116  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_009831  Ssed_2599  methyl-accepting chemotaxis sensory transducer  40.36 
 
 
501 aa  320  5e-86  Shewanella sediminis HAW-EB3  Bacteria  decreased coverage  0.000558383  normal 
 
 
-
 
NC_009665  Shew185_1899  methyl-accepting chemotaxis sensory transducer  38.9 
 
 
506 aa  312  7.999999999999999e-84  Shewanella baltica OS185  Bacteria  hitchhiker  0.000132488  n/a   
 
 
-
 
NC_009997  Sbal195_1906  methyl-accepting chemotaxis sensory transducer  39.57 
 
 
506 aa  310  2.9999999999999997e-83  Shewanella baltica OS195  Bacteria  hitchhiker  0.00117287  normal 
 
 
-
 
NC_008700  Sama_1954  putative methyl-accepting chemotaxis sensory transducer  40.24 
 
 
504 aa  310  4e-83  Shewanella amazonensis SB2B  Bacteria  normal  0.0290306  normal 
 
 
-
 
NC_011663  Sbal223_2420  methyl-accepting chemotaxis sensory transducer  38.7 
 
 
506 aa  309  6.999999999999999e-83  Shewanella baltica OS223  Bacteria  normal  0.0671416  hitchhiker  0.00255163 
 
 
-
 
NC_009052  Sbal_1872  methyl-accepting chemotaxis sensory transducer  38.7 
 
 
506 aa  308  1.0000000000000001e-82  Shewanella baltica OS155  Bacteria  normal  0.0204582  n/a   
 
 
-
 
NC_008321  Shewmr4_1807  methyl-accepting chemotaxis sensory transducer  40.04 
 
 
505 aa  307  2.0000000000000002e-82  Shewanella sp. MR-4  Bacteria  normal  normal 
 
 
-
 
NC_008322  Shewmr7_2170  methyl-accepting chemotaxis sensory transducer  40.04 
 
 
505 aa  307  2.0000000000000002e-82  Shewanella sp. MR-7  Bacteria  normal  normal 
 
 
-
 
NC_008577  Shewana3_1862  methyl-accepting chemotaxis sensory transducer  39.41 
 
 
505 aa  305  1.0000000000000001e-81  Shewanella sp. ANA-3  Bacteria  normal  0.149959  normal 
 
 
-
 
NC_007954  Sden_1601  chemotaxis sensory transducer  40.04 
 
 
500 aa  304  2.0000000000000002e-81  Shewanella denitrificans OS217  Bacteria  normal  0.78336  n/a   
 
 
-
 
NC_004347  SO_2083  methyl-accepting chemotaxis protein  39.69 
 
 
505 aa  303  5.000000000000001e-81  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_009092  Shew_2217  methyl-accepting chemotaxis sensory transducer  39.09 
 
 
500 aa  301  2e-80  Shewanella loihica PV-4  Bacteria  normal  0.802205  normal  0.183546 
 
 
-
 
NC_009438  Sputcn32_1827  methyl-accepting chemotaxis sensory transducer  39.44 
 
 
502 aa  299  6e-80  Shewanella putrefaciens CN-32  Bacteria  hitchhiker  0.00626539  n/a   
 
 
-
 
NC_009901  Spea_2471  methyl-accepting chemotaxis sensory transducer  38.6 
 
 
499 aa  277  4e-73  Shewanella pealeana ATCC 700345  Bacteria  normal  n/a   
 
 
-
 
NC_013457  VEA_000202  methyl-accepting chemotaxis protein  33.97 
 
 
476 aa  251  3e-65  Vibrio sp. Ex25  Bacteria  normal  0.856149  n/a   
 
 
-
 
NC_009784  VIBHAR_05936  hypothetical protein  33.06 
 
 
480 aa  249  7e-65  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_009456  VC0395_0713  methyl-accepting chemotaxis protein  36.98 
 
 
473 aa  246  4.9999999999999997e-64  Vibrio cholerae O395  Bacteria  normal  n/a   
 
 
-
 
NC_009831  Ssed_1664  methyl-accepting chemotaxis sensory transducer  36.12 
 
 
482 aa  245  9.999999999999999e-64  Shewanella sediminis HAW-EB3  Bacteria  normal  0.587548  normal 
 
 
-
 
NC_007954  Sden_3066  chemotaxis sensory transducer  33.6 
 
 
488 aa  242  7.999999999999999e-63  Shewanella denitrificans OS217  Bacteria  normal  0.301784  n/a   
 
 
-
 
NC_008345  Sfri_1416  methyl-accepting chemotaxis sensory transducer  35.09 
 
 
481 aa  239  5.999999999999999e-62  Shewanella frigidimarina NCIMB 400  Bacteria  normal  0.493152  n/a   
 
 
-
 
NC_007954  Sden_0861  chemotaxis sensory transducer  41.67 
 
 
481 aa  238  2e-61  Shewanella denitrificans OS217  Bacteria  normal  n/a   
 
 
-
 
NC_008321  Shewmr4_1442  methyl-accepting chemotaxis sensory transducer  33.81 
 
 
484 aa  234  3e-60  Shewanella sp. MR-4  Bacteria  normal  normal 
 
 
-
 
NC_008322  Shewmr7_1507  methyl-accepting chemotaxis sensory transducer  33.81 
 
 
484 aa  234  4.0000000000000004e-60  Shewanella sp. MR-7  Bacteria  normal  normal 
 
 
-
 
NC_008577  Shewana3_1499  methyl-accepting chemotaxis sensory transducer  33.33 
 
 
484 aa  233  5e-60  Shewanella sp. ANA-3  Bacteria  normal  normal 
 
 
-
 
NC_009092  Shew_2263  methyl-accepting chemotaxis sensory transducer  35.59 
 
 
482 aa  233  6e-60  Shewanella loihica PV-4  Bacteria  hitchhiker  0.00569391  normal  0.100749 
 
 
-
 
NC_009997  Sbal195_2820  methyl-accepting chemotaxis sensory transducer  34.02 
 
 
484 aa  231  1e-59  Shewanella baltica OS195  Bacteria  normal  0.0806929  normal  0.41842 
 
 
-
 
NC_009052  Sbal_2727  methyl-accepting chemotaxis sensory transducer  34.02 
 
 
484 aa  232  1e-59  Shewanella baltica OS155  Bacteria  hitchhiker  0.00000872044  n/a   
 
 
-
 
NC_009665  Shew185_2744  methyl-accepting chemotaxis sensory transducer  33.54 
 
 
484 aa  232  1e-59  Shewanella baltica OS185  Bacteria  normal  0.234847  n/a   
 
 
-
 
NC_011663  Sbal223_1632  methyl-accepting chemotaxis sensory transducer  34.77 
 
 
484 aa  232  1e-59  Shewanella baltica OS223  Bacteria  normal  0.19262  hitchhiker  0.00019204 
 
 
-
 
NC_010506  Swoo_2947  methyl-accepting chemotaxis sensory transducer  37.47 
 
 
482 aa  231  2e-59  Shewanella woodyi ATCC 51908  Bacteria  normal  normal 
 
 
-
 
NC_009092  Shew_2902  methyl-accepting chemotaxis sensory transducer  32.98 
 
 
479 aa  229  6e-59  Shewanella loihica PV-4  Bacteria  normal  0.56843  normal  0.473301 
 
 
-
 
NC_008345  Sfri_3719  methyl-accepting chemotaxis sensory transducer  34.04 
 
 
479 aa  229  6e-59  Shewanella frigidimarina NCIMB 400  Bacteria  normal  0.0481837  n/a   
 
 
-
 
NC_008700  Sama_0643  putative methyl-accepting chemotaxis sensory transducer  34.02 
 
 
478 aa  225  1e-57  Shewanella amazonensis SB2B  Bacteria  hitchhiker  0.000131612  normal 
 
 
-
 
NC_008700  Sama_2140  putative methyl-accepting chemotaxis sensory transducer  34.73 
 
 
479 aa  224  2e-57  Shewanella amazonensis SB2B  Bacteria  normal  normal 
 
 
-
 
NC_009438  Sputcn32_2422  methyl-accepting chemotaxis sensory transducer  35.34 
 
 
484 aa  222  9.999999999999999e-57  Shewanella putrefaciens CN-32  Bacteria  normal  n/a   
 
 
-
 
NC_009901  Spea_1637  methyl-accepting chemotaxis sensory transducer  35.16 
 
 
482 aa  221  1.9999999999999999e-56  Shewanella pealeana ATCC 700345  Bacteria  normal  0.301948  n/a   
 
 
-
 
NC_004347  SO_1056  methyl-accepting chemotaxis protein  32.46 
 
 
630 aa  181  2e-44  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_008577  Shewana3_0895  methyl-accepting chemotaxis sensory transducer  32.08 
 
 
630 aa  179  1e-43  Shewanella sp. ANA-3  Bacteria  normal  normal  0.174985 
 
 
-
 
NC_013456  VEA_002443  N-acetylglucosamine regulated methyl-accepting chemotaxis protein  40.11 
 
 
541 aa  177  4e-43  Vibrio sp. Ex25  Bacteria  unclonable  0.00000057049  n/a   
 
 
-
 
NC_009457  VC0395_A0868  methyl-accepting chemotaxis protein  35.47 
 
 
536 aa  177  4e-43  Vibrio cholerae O395  Bacteria  hitchhiker  0.000231989  n/a   
 
 
-
 
NC_008322  Shewmr7_0930  methyl-accepting chemotaxis sensory transducer  33.17 
 
 
630 aa  176  7e-43  Shewanella sp. MR-7  Bacteria  normal  normal  0.257402 
 
 
-
 
NC_008321  Shewmr4_3042  methyl-accepting chemotaxis sensory transducer  33.08 
 
 
630 aa  175  9.999999999999999e-43  Shewanella sp. MR-4  Bacteria  normal  normal  0.397129 
 
 
-
 
NC_009052  Sbal_0882  methyl-accepting chemotaxis sensory transducer  32.85 
 
 
630 aa  175  9.999999999999999e-43  Shewanella baltica OS155  Bacteria  normal  n/a   
 
 
-
 
NC_009784  VIBHAR_04784  histidine kinase  34.56 
 
 
628 aa  173  5e-42  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_009997  Sbal195_3603  methyl-accepting chemotaxis sensory transducer  32.61 
 
 
630 aa  173  6.999999999999999e-42  Shewanella baltica OS195  Bacteria  normal  0.840663  normal 
 
 
-
 
NC_009665  Shew185_3480  methyl-accepting chemotaxis sensory transducer  32.61 
 
 
630 aa  172  7.999999999999999e-42  Shewanella baltica OS185  Bacteria  normal  n/a   
 
 
-
 
NC_011663  Sbal223_3405  methyl-accepting chemotaxis sensory transducer with Cache sensor  32.61 
 
 
630 aa  172  9e-42  Shewanella baltica OS223  Bacteria  normal  normal 
 
 
-
 
NC_009456  VC0395_0173  methyl-accepting chemotaxis protein  34.17 
 
 
639 aa  170  6e-41  Vibrio cholerae O395  Bacteria  normal  n/a   
 
 
-
 
NC_009783  VIBHAR_01884  hypothetical protein  33.52 
 
 
627 aa  169  9e-41  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_013456  VEA_003139  methyl-accepting chemotaxis protein  33.24 
 
 
627 aa  169  9e-41  Vibrio sp. Ex25  Bacteria  normal  0.116124  n/a   
 
 
-
 
NC_007492  Pfl01_0124  chemotaxis sensory transducer, Cache sensor  33.99 
 
 
626 aa  169  1e-40  Pseudomonas fluorescens Pf0-1  Bacteria  normal  0.201174  normal 
 
 
-
 
NC_013457  VEA_001073  N-acetylglucosamine regulated methyl-accepting chemotaxis protein  33.33 
 
 
628 aa  169  1e-40  Vibrio sp. Ex25  Bacteria  normal  n/a   
 
 
-
 
NC_004578  PSPTO_1061  methyl-accepting chemotaxis protein  34.93 
 
 
626 aa  167  2.9999999999999998e-40  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  0.646209  n/a   
 
 
-
 
NC_009654  Mmwyl1_0969  methyl-accepting chemotaxis sensory transducer  33.9 
 
 
631 aa  167  2.9999999999999998e-40  Marinomonas sp. MWYL1  Bacteria  normal  normal 
 
 
-
 
NC_007005  Psyr_0906  histidine kinase, HAMP region:Cache: chemotaxis sensory transducer  34.93 
 
 
626 aa  166  9e-40  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  normal 
 
 
-
 
NC_010501  PputW619_0425  methyl-accepting chemotaxis sensory transducer with Cache sensor  33.24 
 
 
630 aa  166  1.0000000000000001e-39  Pseudomonas putida W619  Bacteria  normal  0.461628  normal 
 
 
-
 
NC_007005  Psyr_2246  histidine kinase, HAMP region:Cache: chemotaxis sensory transducer  34.33 
 
 
629 aa  165  1.0000000000000001e-39  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  0.265681  normal  0.412954 
 
 
-
 
NC_009512  Pput_3489  methyl-accepting chemotaxis sensory transducer  34.27 
 
 
628 aa  165  1.0000000000000001e-39  Pseudomonas putida F1  Bacteria  normal  0.228387  normal 
 
 
-
 
NC_002947  PP_2249  methyl-accepting chemotaxis transducer  34.27 
 
 
643 aa  164  2.0000000000000002e-39  Pseudomonas putida KT2440  Bacteria  normal  0.477129  normal  0.786945 
 
 
-
 
NC_010322  PputGB1_1880  methyl-accepting chemotaxis sensory transducer with Cache sensor  34.27 
 
 
628 aa  164  2.0000000000000002e-39  Pseudomonas putida GB-1  Bacteria  normal  0.454316  normal 
 
 
-
 
NC_004578  PSPTO_2480  methyl-accepting chemotaxis protein  34.03 
 
 
629 aa  164  2.0000000000000002e-39  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  n/a   
 
 
-
 
NC_013456  VEA_004525  methyl-accepting chemotaxis protein  34.69 
 
 
418 aa  164  5.0000000000000005e-39  Vibrio sp. Ex25  Bacteria  normal  n/a   
 
 
-
 
NC_010501  PputW619_1723  methyl-accepting chemotaxis sensory transducer with Cache sensor  34.29 
 
 
626 aa  163  5.0000000000000005e-39  Pseudomonas putida W619  Bacteria  normal  0.372844  normal 
 
 
-
 
NC_007492  Pfl01_0354  chemotaxis sensory transducer, Cache sensor  35.11 
 
 
630 aa  163  6e-39  Pseudomonas fluorescens Pf0-1  Bacteria  normal  normal 
 
 
-
 
NC_007912  Sde_2316  putative methyl-accepting chemotaxis sensory transducer  35 
 
 
548 aa  162  8.000000000000001e-39  Saccharophagus degradans 2-40  Bacteria  normal  normal  0.0208981 
 
 
-
 
NC_009457  VC0395_A2016  methyl-accepting chemotaxis protein  35.58 
 
 
433 aa  162  9e-39  Vibrio cholerae O395  Bacteria  hitchhiker  0.0000104003  n/a   
 
 
-
 
NC_009438  Sputcn32_3017  methyl-accepting chemotaxis sensory transducer  37.2 
 
 
630 aa  161  2e-38  Shewanella putrefaciens CN-32  Bacteria  normal  n/a   
 
 
-
 
NC_009654  Mmwyl1_0877  methyl-accepting chemotaxis sensory transducer  37.62 
 
 
540 aa  161  2e-38  Marinomonas sp. MWYL1  Bacteria  normal  normal  0.11332 
 
 
-
 
NC_009654  Mmwyl1_0219  methyl-accepting chemotaxis sensory transducer  39.27 
 
 
773 aa  161  3e-38  Marinomonas sp. MWYL1  Bacteria  normal  0.952357  normal 
 
 
-
 
NC_009831  Ssed_4463  methyl-accepting chemotaxis sensory transducer  34.91 
 
 
552 aa  160  5e-38  Shewanella sediminis HAW-EB3  Bacteria  normal  normal  0.43301 
 
 
-
 
NC_009901  Spea_3491  methyl-accepting chemotaxis sensory transducer with Cache sensor  38.25 
 
 
626 aa  158  2e-37  Shewanella pealeana ATCC 700345  Bacteria  normal  n/a   
 
 
-
 
NC_004347  SO_4053  methyl-accepting chemotaxis protein  35.9 
 
 
634 aa  158  3e-37  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_008577  Shewana3_3611  methyl-accepting chemotaxis sensory transducer  35.58 
 
 
634 aa  157  3e-37  Shewanella sp. ANA-3  Bacteria  normal  normal 
 
 
-
 
NC_008340  Mlg_1937  methyl-accepting chemotaxis sensory transducer  33.43 
 
 
541 aa  157  3e-37  Alkalilimnicola ehrlichii MLHE-1  Bacteria  normal  0.158854  normal  0.960341 
 
 
-
 
NC_007005  Psyr_2315  histidine kinase, HAMP region: chemotaxis sensory transducer  33.63 
 
 
653 aa  157  5.0000000000000005e-37  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  0.967368  normal 
 
 
-
 
NC_009457  VC0395_A2871  methyl-accepting chemotaxis protein  34.1 
 
 
541 aa  156  7e-37  Vibrio cholerae O395  Bacteria  hitchhiker  0.0000000000270316  n/a   
 
 
-
 
NC_011313  VSAL_II1022  methyl-accepting chemotaxis protein  36.75 
 
 
628 aa  156  9e-37  Aliivibrio salmonicida LFI1238  Bacteria  normal  0.771007  n/a   
 
 
-
 
NC_009783  VIBHAR_00866  hypothetical protein  34.67 
 
 
418 aa  156  9e-37  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_011146  Gbem_2857  methyl-accepting chemotaxis sensory transducer  34.58 
 
 
392 aa  156  9e-37  Geobacter bemidjiensis Bem  Bacteria  normal  0.0205381  n/a   
 
 
-
 
NC_007298  Daro_3112  chemotaxis sensory transducer  33.54 
 
 
541 aa  156  1e-36  Dechloromonas aromatica RCB  Bacteria  normal  normal 
 
 
-
 
NC_011312  VSAL_I2130  methyl-accepting chemotaxis protein  34.17 
 
 
546 aa  155  1e-36  Aliivibrio salmonicida LFI1238  Bacteria  normal  0.665531  n/a   
 
 
-
 
NC_008463  PA14_56000  chemotactic transducer PctA  34.58 
 
 
629 aa  155  1e-36  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  0.0512673  normal 
 
 
-
 
NC_008463  PA14_56010  chemotactic transducer PctB  32.4 
 
 
629 aa  155  1e-36  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  normal 
 
 
-
 
NC_004349  SO_A0106  methyl-accepting chemotaxis protein  32.96 
 
 
546 aa  154  2e-36  Shewanella oneidensis MR-1  Bacteria  normal  0.827543  n/a   
 
 
-
 
NC_004578  PSPTO_2511  methyl-accepting chemotaxis protein  32.57 
 
 
653 aa  155  2e-36  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  0.295069  n/a   
 
 
-
 
NC_009457  VC0395_A0908  methyl-accepting chemotaxis protein  31.82 
 
 
633 aa  155  2e-36  Vibrio cholerae O395  Bacteria  hitchhiker  0.00000172893  n/a   
 
 
-
 
NC_013501  Rmar_2782  methyl-accepting chemotaxis sensory transducer  34.86 
 
 
601 aa  155  2e-36  Rhodothermus marinus DSM 4252  Bacteria  normal  0.163256  n/a   
 
 
-
 
NC_009438  Sputcn32_0513  methyl-accepting chemotaxis sensory transducer  36.33 
 
 
542 aa  155  2e-36  Shewanella putrefaciens CN-32  Bacteria  normal  n/a   
 
 
-
 
NC_008789  Hhal_0167  methyl-accepting chemotaxis sensory transducer  31.83 
 
 
540 aa  155  2e-36  Halorhodospira halophila SL1  Bacteria  normal  n/a   
 
 
-
 
NC_009457  VC0395_A0931  methyl-accepting chemotaxis protein  33.62 
 
 
543 aa  155  2e-36  Vibrio cholerae O395  Bacteria  normal  n/a   
 
 
-
 
NC_007492  Pfl01_3770  chemotaxis sensory transducer  32.61 
 
 
715 aa  154  2.9999999999999998e-36  Pseudomonas fluorescens Pf0-1  Bacteria  normal  normal 
 
 
-
 
NC_009656  PSPA7_4877  chemotactic transducer PctB  32.4 
 
 
629 aa  154  4e-36  Pseudomonas aeruginosa PA7  Bacteria  normal  0.164155  n/a   
 
 
-
 
NC_009784  VIBHAR_05691  histidine kinase  32.11 
 
 
538 aa  154  4e-36  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_009654  Mmwyl1_3948  methyl-accepting chemotaxis sensory transducer  32.39 
 
 
658 aa  154  4e-36  Marinomonas sp. MWYL1  Bacteria  normal  normal 
 
 
-
 
NC_007005  Psyr_3534  histidine kinase, HAMP region:Cache: chemotaxis sensory transducer  34.38 
 
 
629 aa  154  4e-36  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  0.667463  normal  0.0882884 
 
 
-
 
NC_012918  GM21_1357  methyl-accepting chemotaxis sensory transducer  34.58 
 
 
392 aa  153  7e-36  Geobacter sp. M21  Bacteria  n/a    hitchhiker  3.9116599999999996e-27 
 
 
-
 
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