| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_2599 |
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| Symbol | |
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| ID | 5610705 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 3150258 |
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| End bp | 3151763 |
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| Gene Length | 1506 bp |
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| Protein Length | 501 aa |
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| Translation table | 11 |
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| GC content | 50% |
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| IMG OID | 640933518 |
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| Product | methyl-accepting chemotaxis sensory transducer |
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| Protein accession | YP_001474334 |
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| Protein GI | 157375734 |
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| COG category | [N] Cell motility
[T] Signal transduction mechanisms |
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| COG ID | [COG0840] Methyl-accepting chemotaxis protein |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 3 |
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| Plasmid unclonability p-value | 0.000558383 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 32 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAAGAAG TAAAATTCCG CTGGATAGAT CAATACCTTA TCCATATGAC CCTGAAAACC
AAATTCGCTA TTTTAGCTAT CGTTCCTATC TTCACCCTGA TTGGTCTGGC ATTTATGCTT
AACAGCCAAT TTGAATCGGA GCTGCTTGAT ACGCATAACA AGGCAAGCCT GAACCAGGCT
CAAAGCATAA ATTCAGTGGT TGATATCAGC TATGACTTTA TTCCTGAGGC ACAACGTGCA
GAATACCTGC AGAAAATTAA CCGGGTCGCC AATACTAAAA TCATAAGCAA GCTCGATGGC
AAGAGTGAGC GCCTCGCGCA ACAGGGAGGC GGTAACCTTG AGATAAGTTC CGGTCTACAG
TCGGTCAGTA AAGTCAGTAG CAACCAATTA GCCACGACCT TGACCGTCCC CCCTCTCGAT
AGCCTCACCG ATAGCAACCA TTGGTTATCT ATTGTGATGT CCGTCGCGTT CATGGTTGTG
ATCATCTTAA TCGCAGGTTA CTACATCTCG ACATTTGTCG GAGGCGCACT CTACACCAGT
GTGATGGCCC TTAAGCGAGC CGCCGACGGC GATCTCACCA GTCGTCTCAA CTTTTTCGAA
GTTAAGGACG AGTTCAGTTT ACTGGCTATC AGCATAGATA CACTGGTCGA AAGACAACAT
ACCCTGGTCA AACAGATCAC ACAGGCCAGC ACACAGATCC GTCAAGTCGT GCAATCATTC
AGACAAAATG CGCAGGAAGG TCAGTCATTG GCTGCAAATC AACGTCAGCA TCTGGACTCA
CTCGCCACCG CGATGGAGGA GATGACAGCT GCCGTGATTG AGGTTGCCAG AAATGCCGAG
CAGTCTTCGG CTGAGACTCA GGAAGCCAAT ACTCAGGTTG ATGCCGGCTC CAAAGACATC
GAAACGACCG TTGTCGCTAT CGGCGGTTTA TCCAATGAGA TAGCCAATGC CTCAAGCGCC
GTCCACGATC TCAATGAGAA TGCGGCCAAG ATCGATGAAG TGGTCACGAC CATTAACGCC
ATTTCCGAGC AAACTAACCT GCTTGCACTC AATGCCGCCA TCGAGGCTGC CAGAGCCGGT
GAGCAAGGAC GAGGCTTTGC CGTCGTTGCC GATGAGGTAA GAACCCTTGC GGGACGAACT
CAGTCCGCGA CCGTCGAGAT CAAATCTATG ATTGAAGCGC TTCAATCCGG TGCTCAGAAC
CTGACTCAGG TGATGAAGCG CACCGTAGAT AAGGCCGATG ATGGCAAAAA GCATGTACTG
GACACGGGTG AGGATCTCAA GGCTATTGCA CACCATAGCT CTAAAGTGAT GGAGATGAGT
GTACTCATTG CAACCTCTGC AGAGGAGCAG TCATCGGTTG CCAATGAAAT TGCCTCTAAC
CTGATGGAGA TCCGCAATCA GTCACACAAT GTAGAGCAAT CGGCAAACGA ATCGGTTTCA
GGTTGTGACG AGCTACATGC CACTGCCGAG CAGTTAGATG ATCTGCTTGT TGGCTTGAAG
ATCTAG
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| Protein sequence | MKEVKFRWID QYLIHMTLKT KFAILAIVPI FTLIGLAFML NSQFESELLD THNKASLNQA
QSINSVVDIS YDFIPEAQRA EYLQKINRVA NTKIISKLDG KSERLAQQGG GNLEISSGLQ
SVSKVSSNQL ATTLTVPPLD SLTDSNHWLS IVMSVAFMVV IILIAGYYIS TFVGGALYTS
VMALKRAADG DLTSRLNFFE VKDEFSLLAI SIDTLVERQH TLVKQITQAS TQIRQVVQSF
RQNAQEGQSL AANQRQHLDS LATAMEEMTA AVIEVARNAE QSSAETQEAN TQVDAGSKDI
ETTVVAIGGL SNEIANASSA VHDLNENAAK IDEVVTTINA ISEQTNLLAL NAAIEAARAG
EQGRGFAVVA DEVRTLAGRT QSATVEIKSM IEALQSGAQN LTQVMKRTVD KADDGKKHVL
DTGEDLKAIA HHSSKVMEMS VLIATSAEEQ SSVANEIASN LMEIRNQSHN VEQSANESVS
GCDELHATAE QLDDLLVGLK I
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