| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sama_2140 |
|---|
| Symbol | |
|---|
| ID | 4604390 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella amazonensis SB2B |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008700 |
|---|
| Strand | - |
|---|
| Start bp | 2584975 |
|---|
| End bp | 2586414 |
|---|
| Gene Length | 1440 bp |
|---|
| Protein Length | 479 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 56% |
|---|
| IMG OID | 639781525 |
|---|
| Product | putative methyl-accepting chemotaxis sensory transducer |
|---|
| Protein accession | YP_928015 |
|---|
| Protein GI | 119775275 |
|---|
| COG category | [N] Cell motility
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG0840] Methyl-accepting chemotaxis protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 11 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAACAAA TAACTTTTCG TAAAATTGAT GCGATTCTGA TCAAATTCAG TCTTAACGGT
AAATTTTGGT TGGTGTGCTC CATGGTGGCT GCCATCACAG CCGTTGTGGC GCTGGCGAAT
TATCGCCTGC AGCTGGCCAC CATAGAATCC GCCAGTGACG CGCGGGTCAG CGCAGCCCTC
GATGCCTATG CAGAAATCGC CCGGGACAAC GATCTGCAAG GGGACGCGCT CAGGGCATTT
GCCACGCGCC ATGGTTTGTC TCAGTCCGGC CAGAGCGGGC GCAAAGGCAA TACAGTCACG
GCAGTGACCA ACCTTGACGG TTCGCTGCTG GCGCTTAGCC GCAATGTGGC TGATTGGGAG
AGTGAGTCCC GCAGCGATGC CAGTATGATG CTCTGGTGGG CCGCTTTGGG ATTGCTGCCG
CTGTTTCAGC TCAGCTACTG GATGTCCACG TCCCTTGGTG GCGGCCTATG GGATATGTAC
ATGGCCATCA AGCGTTTGGC CGATGGCGAC CTGACCCAGC GACTGAATTT TTTCGGCACC
GATGACTTCA GTCTCATTGC CCGGGAAATT GACCGCTGCG CAGACAACAT GAGTGATATG
CTTTCTGCCA TTCGTAACAA CGCCGACACC CTGAAACGTG CGTCCTCGGC GTTTTCCAAT
CAGGCCCAAA GCAGTGACAG TCTCGCACGG CGGCAACACG AGTTTCTCGA TTCAGTGGCT
GTGGCCATGT CACAGATGAC GTCGGCCATT GAAGAAGTGT CGGCCAATGC CTCGGCAACA
TCCACTCAAA CCCGCTCCAA CGCAGGGGCA GTTAAAGAAA GCCAAAAACG TATTACCAAT
ACGGTGTCAG GCATTGCCGA ACTGTCCGGC AAGATAGGGG ATGCATCGTC TTCGGTGGAT
GCACTGTCAC GTGAAGCAAC CGAGATAAGC GCCGTGGTCA CAGTGATCGA CAGCATCTCA
GAGCAAACCA ACCTGCTTGC CCTGAACGCA GCCATTGAGG CCGCCCGCGC CGGTGAGCAG
GGAAGGGGCT TTGCGGTGGT GGCCGATGAA GTCCGTACCC TGGCTGGCCG TACCCAACAG
GCCACTGTGG AAATTCAATC CATGATTGAA AGCCTGCAAT CCGGCAGTAA GGCGCTGTCC
GGCATAACGG GTGACATTGT CAGCCGGGCA GAGCAGGGAA AGAGTGCGGT TTCGCTGGTG
GGTGAGGATG TGGGAAATAT TGCAGATTCC ATCAATCAGG TGTTTGATAT GGCAAGCCAT
ATAGCGGCAT CGGCCGAGGA GCAGAGTGTG GCGTGCCGTG AGATTGCAGC GCAGCTTGCT
GAAATCAGAA ACCAGTCGGG CGTTATCAGT GATAATGCGC ACAACGCGCT GGAATTGGCC
CATGAACTGG CACAGGCCTC GGTGGCGTTG ACGGATATCC TGGGACAGTA CCGCACCTGA
|
|---|
| Protein sequence | MKQITFRKID AILIKFSLNG KFWLVCSMVA AITAVVALAN YRLQLATIES ASDARVSAAL
DAYAEIARDN DLQGDALRAF ATRHGLSQSG QSGRKGNTVT AVTNLDGSLL ALSRNVADWE
SESRSDASMM LWWAALGLLP LFQLSYWMST SLGGGLWDMY MAIKRLADGD LTQRLNFFGT
DDFSLIAREI DRCADNMSDM LSAIRNNADT LKRASSAFSN QAQSSDSLAR RQHEFLDSVA
VAMSQMTSAI EEVSANASAT STQTRSNAGA VKESQKRITN TVSGIAELSG KIGDASSSVD
ALSREATEIS AVVTVIDSIS EQTNLLALNA AIEAARAGEQ GRGFAVVADE VRTLAGRTQQ
ATVEIQSMIE SLQSGSKALS GITGDIVSRA EQGKSAVSLV GEDVGNIADS INQVFDMASH
IAASAEEQSV ACREIAAQLA EIRNQSGVIS DNAHNALELA HELAQASVAL TDILGQYRT
|
|---|
| |